Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03590

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03580 and MMJJ_RS03585 are separated by 29 nucleotidesMMJJ_RS03585 and MMJJ_RS03590 are separated by 16 nucleotidesMMJJ_RS03590 and MMJJ_RS03595 are separated by 47 nucleotidesMMJJ_RS03595 and MMJJ_RS03600 are separated by 70 nucleotides MMJJ_RS03580: MMJJ_RS03580 - TIGR00303 family protein, at 668,823 to 669,875 _RS03580 MMJJ_RS03585: MMJJ_RS03585 - methanogenesis marker 6 protein, at 669,905 to 670,351 _RS03585 MMJJ_RS03590: MMJJ_RS03590 - restriction endonuclease, at 670,368 to 670,775 _RS03590 MMJJ_RS03595: MMJJ_RS03595 - hypothetical protein, at 670,823 to 671,236 _RS03595 MMJJ_RS03600: MMJJ_RS03600 - TrmJ/YjtD family RNA methyltransferase, at 671,307 to 672,011 _RS03600 Position (kb) 670 671Strain fitness (log2 ratio) -2 -1 0 1 2 3at 669.736 kb on + strand, within MMJJ_RS03580at 669.829 kb on + strandat 669.850 kb on - strandat 669.851 kb on + strandat 669.968 kb on - strand, within MMJJ_RS03585at 670.291 kb on - strand, within MMJJ_RS03585at 670.336 kb on + strandat 670.336 kb on + strandat 670.336 kb on + strandat 670.349 kb on - strandat 670.350 kb on + strandat 670.376 kb on - strandat 670.377 kb on + strandat 670.381 kb on + strandat 670.394 kb on - strandat 670.394 kb on - strandat 670.477 kb on - strand, within MMJJ_RS03590at 670.508 kb on - strand, within MMJJ_RS03590at 670.545 kb on - strand, within MMJJ_RS03590at 670.546 kb on + strand, within MMJJ_RS03590at 670.626 kb on + strand, within MMJJ_RS03590at 670.639 kb on - strand, within MMJJ_RS03590at 670.639 kb on - strand, within MMJJ_RS03590at 670.644 kb on + strand, within MMJJ_RS03590at 670.645 kb on - strand, within MMJJ_RS03590at 670.646 kb on + strand, within MMJJ_RS03590at 670.745 kb on - strandat 670.773 kb on - strandat 670.773 kb on - strandat 670.774 kb on + strandat 670.776 kb on - strandat 670.776 kb on - strandat 670.776 kb on - strandat 670.776 kb on - strandat 670.777 kb on + strandat 670.778 kb on - strandat 670.778 kb on - strandat 670.778 kb on - strandat 670.779 kb on + strandat 670.779 kb on + strandat 670.792 kb on + strandat 670.839 kb on + strandat 670.866 kb on + strand, within MMJJ_RS03595at 670.866 kb on + strand, within MMJJ_RS03595at 670.869 kb on - strand, within MMJJ_RS03595at 670.869 kb on - strand, within MMJJ_RS03595at 670.869 kb on - strand, within MMJJ_RS03595at 670.870 kb on + strand, within MMJJ_RS03595at 670.870 kb on + strand, within MMJJ_RS03595at 670.889 kb on - strand, within MMJJ_RS03595at 670.890 kb on + strand, within MMJJ_RS03595at 670.968 kb on + strand, within MMJJ_RS03595at 670.984 kb on - strand, within MMJJ_RS03595at 671.019 kb on + strand, within MMJJ_RS03595at 671.166 kb on + strand, within MMJJ_RS03595at 671.229 kb on + strandat 671.229 kb on + strandat 671.229 kb on + strandat 671.229 kb on + strandat 671.229 kb on + strandat 671.230 kb on - strandat 671.230 kb on - strandat 671.230 kb on - strandat 671.257 kb on - strandat 671.257 kb on - strandat 671.258 kb on + strandat 671.261 kb on + strandat 671.266 kb on - strandat 671.270 kb on + strandat 671.276 kb on + strandat 671.276 kb on + strandat 671.309 kb on + strandat 671.321 kb on - strandat 671.322 kb on + strandat 671.328 kb on + strandat 671.337 kb on - strandat 671.338 kb on + strandat 671.341 kb on + strandat 671.391 kb on + strand, within MMJJ_RS03600at 671.406 kb on - strand, within MMJJ_RS03600at 671.406 kb on - strand, within MMJJ_RS03600at 671.406 kb on - strand, within MMJJ_RS03600at 671.406 kb on - strand, within MMJJ_RS03600at 671.406 kb on - strand, within MMJJ_RS03600at 671.406 kb on - strand, within MMJJ_RS03600at 671.406 kb on - strand, within MMJJ_RS03600at 671.407 kb on + strand, within MMJJ_RS03600at 671.407 kb on + strand, within MMJJ_RS03600at 671.417 kb on - strand, within MMJJ_RS03600at 671.556 kb on - strand, within MMJJ_RS03600at 671.640 kb on - strand, within MMJJ_RS03600at 671.640 kb on - strand, within MMJJ_RS03600at 671.641 kb on + strand, within MMJJ_RS03600at 671.682 kb on - strand, within MMJJ_RS03600at 671.735 kb on - strand, within MMJJ_RS03600at 671.751 kb on - strand, within MMJJ_RS03600

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE
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669,736 + MMJJ_RS03580 0.87 +1.4
669,829 + -0.0
669,850 - -0.8
669,851 + -0.4
669,968 - MMJJ_RS03585 0.14 +2.5
670,291 - MMJJ_RS03585 0.86 -0.7
670,336 + +0.5
670,336 + -0.3
670,336 + -0.5
670,349 - +0.1
670,350 + -0.0
670,376 - +0.2
670,377 + -0.6
670,381 + +0.4
670,394 - -0.1
670,394 - -0.7
670,477 - MMJJ_RS03590 0.27 +0.2
670,508 - MMJJ_RS03590 0.34 +1.0
670,545 - MMJJ_RS03590 0.43 +0.1
670,546 + MMJJ_RS03590 0.44 +0.6
670,626 + MMJJ_RS03590 0.63 +0.3
670,639 - MMJJ_RS03590 0.66 -0.3
670,639 - MMJJ_RS03590 0.66 +0.1
670,644 + MMJJ_RS03590 0.68 +1.0
670,645 - MMJJ_RS03590 0.68 +0.1
670,646 + MMJJ_RS03590 0.68 -0.3
670,745 - -0.4
670,773 - -0.6
670,773 - +0.0
670,774 + -0.1
670,776 - +0.3
670,776 - +0.6
670,776 - +0.3
670,776 - -0.3
670,777 + -0.7
670,778 - +0.6
670,778 - -0.2
670,778 - -0.4
670,779 + -0.0
670,779 + -0.2
670,792 + +0.3
670,839 + +0.2
670,866 + MMJJ_RS03595 0.10 -1.8
670,866 + MMJJ_RS03595 0.10 +0.3
670,869 - MMJJ_RS03595 0.11 -0.1
670,869 - MMJJ_RS03595 0.11 +0.3
670,869 - MMJJ_RS03595 0.11 +0.3
670,870 + MMJJ_RS03595 0.11 -0.1
670,870 + MMJJ_RS03595 0.11 -0.4
670,889 - MMJJ_RS03595 0.16 -0.7
670,890 + MMJJ_RS03595 0.16 +0.4
670,968 + MMJJ_RS03595 0.35 -0.1
670,984 - MMJJ_RS03595 0.39 +0.0
671,019 + MMJJ_RS03595 0.47 -0.4
671,166 + MMJJ_RS03595 0.83 +0.2
671,229 + +0.1
671,229 + -0.3
671,229 + +0.7
671,229 + +0.6
671,229 + +0.2
671,230 - +3.3
671,230 - -0.6
671,230 - -0.1
671,257 - -0.4
671,257 - +0.1
671,258 + +0.5
671,261 + +0.0
671,266 - -1.1
671,270 + +0.9
671,276 + +0.1
671,276 + -0.6
671,309 + +0.3
671,321 - +0.0
671,322 + -0.0
671,328 + +0.4
671,337 - +1.1
671,338 + +0.8
671,341 + -1.2
671,391 + MMJJ_RS03600 0.12 +1.0
671,406 - MMJJ_RS03600 0.14 -0.4
671,406 - MMJJ_RS03600 0.14 -0.4
671,406 - MMJJ_RS03600 0.14 +0.9
671,406 - MMJJ_RS03600 0.14 -0.5
671,406 - MMJJ_RS03600 0.14 +0.7
671,406 - MMJJ_RS03600 0.14 +0.8
671,406 - MMJJ_RS03600 0.14 -0.0
671,407 + MMJJ_RS03600 0.14 -0.2
671,407 + MMJJ_RS03600 0.14 +0.1
671,417 - MMJJ_RS03600 0.16 -0.3
671,556 - MMJJ_RS03600 0.35 +0.4
671,640 - MMJJ_RS03600 0.47 +0.7
671,640 - MMJJ_RS03600 0.47 -0.2
671,641 + MMJJ_RS03600 0.47 -0.4
671,682 - MMJJ_RS03600 0.53 -0.0
671,735 - MMJJ_RS03600 0.61 -0.2
671,751 - MMJJ_RS03600 0.63 -0.1

Or see this region's nucleotide sequence