Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00400

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00390 and MMJJ_RS00395 are separated by 18 nucleotidesMMJJ_RS00395 and MMJJ_RS00400 are separated by 42 nucleotidesMMJJ_RS00400 and MMJJ_RS00405 are separated by 76 nucleotidesMMJJ_RS00405 and MMJJ_RS00410 are separated by 43 nucleotides MMJJ_RS00390: MMJJ_RS00390 - proteasome assembly chaperone family protein, at 73,947 to 74,654 _RS00390 MMJJ_RS00395: MMJJ_RS00395 - DUF473 domain-containing protein, at 74,673 to 75,050 _RS00395 MMJJ_RS00400: MMJJ_RS00400 - tautomerase family protein, at 75,093 to 75,287 _RS00400 MMJJ_RS00405: MMJJ_RS00405 - flavodoxin family protein, at 75,364 to 75,945 _RS00405 MMJJ_RS00410: MMJJ_RS00410 - hypothetical protein, at 75,989 to 76,417 _RS00410 Position (kb) 75 76Strain fitness (log2 ratio) -2 -1 0 1 2at 74.151 kb on - strand, within MMJJ_RS00390at 74.168 kb on + strand, within MMJJ_RS00390at 74.171 kb on + strand, within MMJJ_RS00390at 74.173 kb on - strand, within MMJJ_RS00390at 74.188 kb on - strand, within MMJJ_RS00390at 74.188 kb on - strand, within MMJJ_RS00390at 74.188 kb on - strand, within MMJJ_RS00390at 74.188 kb on - strand, within MMJJ_RS00390at 74.207 kb on + strand, within MMJJ_RS00390at 74.207 kb on + strand, within MMJJ_RS00390at 74.209 kb on - strand, within MMJJ_RS00390at 74.209 kb on - strand, within MMJJ_RS00390at 74.209 kb on - strand, within MMJJ_RS00390at 74.209 kb on - strand, within MMJJ_RS00390at 74.210 kb on + strand, within MMJJ_RS00390at 74.210 kb on + strand, within MMJJ_RS00390at 74.216 kb on - strand, within MMJJ_RS00390at 74.216 kb on - strand, within MMJJ_RS00390at 74.216 kb on - strand, within MMJJ_RS00390at 74.216 kb on - strand, within MMJJ_RS00390at 74.217 kb on + strand, within MMJJ_RS00390at 74.217 kb on + strand, within MMJJ_RS00390at 74.217 kb on + strand, within MMJJ_RS00390at 74.217 kb on + strand, within MMJJ_RS00390at 74.217 kb on + strand, within MMJJ_RS00390at 74.225 kb on - strand, within MMJJ_RS00390at 74.226 kb on + strand, within MMJJ_RS00390at 74.252 kb on + strandat 74.270 kb on + strand, within MMJJ_RS00390at 74.385 kb on + strand, within MMJJ_RS00390at 74.385 kb on + strand, within MMJJ_RS00390at 74.408 kb on - strand, within MMJJ_RS00390at 74.409 kb on + strand, within MMJJ_RS00390at 74.421 kb on + strand, within MMJJ_RS00390at 74.470 kb on - strand, within MMJJ_RS00390at 74.496 kb on + strand, within MMJJ_RS00390at 74.501 kb on + strand, within MMJJ_RS00390at 74.512 kb on - strand, within MMJJ_RS00390at 74.642 kb on - strandat 74.642 kb on - strandat 74.642 kb on - strandat 74.643 kb on + strandat 74.646 kb on - strandat 74.646 kb on - strandat 74.646 kb on - strandat 74.646 kb on - strandat 74.646 kb on - strandat 74.646 kb on - strandat 74.646 kb on - strandat 74.646 kb on - strandat 74.646 kb on - strandat 74.646 kb on - strandat 74.646 kb on - strandat 74.646 kb on - strandat 74.647 kb on + strandat 74.647 kb on + strandat 74.647 kb on + strandat 74.647 kb on + strandat 74.647 kb on + strandat 74.647 kb on + strandat 74.647 kb on + strandat 74.647 kb on + strandat 74.647 kb on + strandat 74.647 kb on + strandat 74.647 kb on + strandat 74.648 kb on - strandat 74.649 kb on + strandat 74.653 kb on + strandat 74.653 kb on + strandat 74.653 kb on + strandat 74.765 kb on - strand, within MMJJ_RS00395at 74.876 kb on - strand, within MMJJ_RS00395at 74.882 kb on - strand, within MMJJ_RS00395at 74.882 kb on - strand, within MMJJ_RS00395at 74.883 kb on + strand, within MMJJ_RS00395at 74.923 kb on - strand, within MMJJ_RS00395at 74.923 kb on - strand, within MMJJ_RS00395at 74.923 kb on - strand, within MMJJ_RS00395at 74.924 kb on + strand, within MMJJ_RS00395at 74.932 kb on - strand, within MMJJ_RS00395at 74.960 kb on + strand, within MMJJ_RS00395at 75.016 kb on - strandat 75.038 kb on + strandat 75.039 kb on - strandat 75.109 kb on - strandat 75.124 kb on - strand, within MMJJ_RS00400at 75.181 kb on - strand, within MMJJ_RS00400at 75.211 kb on - strand, within MMJJ_RS00400at 75.212 kb on + strand, within MMJJ_RS00400at 75.215 kb on - strand, within MMJJ_RS00400at 75.215 kb on - strand, within MMJJ_RS00400at 75.266 kb on + strand, within MMJJ_RS00400at 75.266 kb on + strand, within MMJJ_RS00400at 75.272 kb on - strandat 75.300 kb on - strandat 75.301 kb on + strandat 75.342 kb on - strandat 75.343 kb on + strandat 75.371 kb on - strandat 75.371 kb on - strandat 75.434 kb on - strand, within MMJJ_RS00405at 75.472 kb on + strand, within MMJJ_RS00405at 75.494 kb on - strand, within MMJJ_RS00405at 75.540 kb on - strand, within MMJJ_RS00405at 75.540 kb on - strand, within MMJJ_RS00405at 75.541 kb on + strand, within MMJJ_RS00405at 75.541 kb on + strand, within MMJJ_RS00405at 75.541 kb on + strand, within MMJJ_RS00405at 75.548 kb on - strand, within MMJJ_RS00405at 75.596 kb on - strand, within MMJJ_RS00405at 75.596 kb on - strand, within MMJJ_RS00405at 75.616 kb on - strand, within MMJJ_RS00405at 75.616 kb on - strand, within MMJJ_RS00405at 75.685 kb on + strand, within MMJJ_RS00405at 75.754 kb on + strand, within MMJJ_RS00405at 75.781 kb on + strand, within MMJJ_RS00405at 75.827 kb on + strand, within MMJJ_RS00405at 75.941 kb on - strandat 75.942 kb on + strandat 75.943 kb on - strandat 75.946 kb on - strandat 75.947 kb on + strandat 75.966 kb on - strandat 75.976 kb on - strandat 76.026 kb on - strandat 76.030 kb on + strandat 76.077 kb on - strand, within MMJJ_RS00410at 76.082 kb on + strand, within MMJJ_RS00410at 76.085 kb on + strand, within MMJJ_RS00410at 76.086 kb on - strand, within MMJJ_RS00410at 76.086 kb on - strand, within MMJJ_RS00410at 76.086 kb on - strand, within MMJJ_RS00410at 76.086 kb on - strand, within MMJJ_RS00410at 76.102 kb on - strand, within MMJJ_RS00410at 76.152 kb on - strand, within MMJJ_RS00410at 76.198 kb on - strand, within MMJJ_RS00410at 76.198 kb on - strand, within MMJJ_RS00410at 76.251 kb on - strand, within MMJJ_RS00410at 76.252 kb on + strand, within MMJJ_RS00410at 76.268 kb on - strand, within MMJJ_RS00410at 76.268 kb on - strand, within MMJJ_RS00410at 76.269 kb on + strand, within MMJJ_RS00410at 76.269 kb on + strand, within MMJJ_RS00410at 76.269 kb on + strand, within MMJJ_RS00410at 76.269 kb on + strand, within MMJJ_RS00410

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE
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74,151 - MMJJ_RS00390 0.29 +0.6
74,168 + MMJJ_RS00390 0.31 +0.2
74,171 + MMJJ_RS00390 0.32 -0.5
74,173 - MMJJ_RS00390 0.32 -0.2
74,188 - MMJJ_RS00390 0.34 +1.9
74,188 - MMJJ_RS00390 0.34 +0.1
74,188 - MMJJ_RS00390 0.34 +0.9
74,188 - MMJJ_RS00390 0.34 -0.1
74,207 + MMJJ_RS00390 0.37 -0.2
74,207 + MMJJ_RS00390 0.37 +0.7
74,209 - MMJJ_RS00390 0.37 +0.1
74,209 - MMJJ_RS00390 0.37 +0.0
74,209 - MMJJ_RS00390 0.37 +0.3
74,209 - MMJJ_RS00390 0.37 +0.1
74,210 + MMJJ_RS00390 0.37 -0.3
74,210 + MMJJ_RS00390 0.37 +0.1
74,216 - MMJJ_RS00390 0.38 -0.9
74,216 - MMJJ_RS00390 0.38 -0.3
74,216 - MMJJ_RS00390 0.38 -0.4
74,216 - MMJJ_RS00390 0.38 -0.1
74,217 + MMJJ_RS00390 0.38 +0.3
74,217 + MMJJ_RS00390 0.38 -0.9
74,217 + MMJJ_RS00390 0.38 -0.6
74,217 + MMJJ_RS00390 0.38 +0.4
74,217 + MMJJ_RS00390 0.38 -0.6
74,225 - MMJJ_RS00390 0.39 -0.3
74,226 + MMJJ_RS00390 0.39 -0.5
74,252 + +1.3
74,270 + MMJJ_RS00390 0.46 -0.1
74,385 + MMJJ_RS00390 0.62 -0.4
74,385 + MMJJ_RS00390 0.62 +1.7
74,408 - MMJJ_RS00390 0.65 +0.2
74,409 + MMJJ_RS00390 0.65 -1.1
74,421 + MMJJ_RS00390 0.67 +0.3
74,470 - MMJJ_RS00390 0.74 +0.2
74,496 + MMJJ_RS00390 0.78 +0.1
74,501 + MMJJ_RS00390 0.78 +0.2
74,512 - MMJJ_RS00390 0.80 -1.0
74,642 - +0.4
74,642 - +0.2
74,642 - -0.4
74,643 + +0.1
74,646 - -0.3
74,646 - -0.3
74,646 - +0.4
74,646 - -0.7
74,646 - -0.1
74,646 - -0.5
74,646 - -0.4
74,646 - -1.3
74,646 - +0.2
74,646 - -0.1
74,646 - +0.3
74,646 - +0.5
74,647 + -0.5
74,647 + +0.1
74,647 + -0.2
74,647 + +0.1
74,647 + -0.3
74,647 + +1.3
74,647 + -0.3
74,647 + +0.5
74,647 + -0.5
74,647 + +0.3
74,647 + +1.1
74,648 - +0.3
74,649 + +1.1
74,653 + +0.4
74,653 + -0.0
74,653 + +0.3
74,765 - MMJJ_RS00395 0.24 +0.0
74,876 - MMJJ_RS00395 0.54 +0.1
74,882 - MMJJ_RS00395 0.55 +0.1
74,882 - MMJJ_RS00395 0.55 +0.3
74,883 + MMJJ_RS00395 0.56 -0.8
74,923 - MMJJ_RS00395 0.66 -1.1
74,923 - MMJJ_RS00395 0.66 -2.4
74,923 - MMJJ_RS00395 0.66 +0.8
74,924 + MMJJ_RS00395 0.66 -0.8
74,932 - MMJJ_RS00395 0.69 -0.8
74,960 + MMJJ_RS00395 0.76 -0.6
75,016 - -0.1
75,038 + -0.3
75,039 - +0.8
75,109 - +0.0
75,124 - MMJJ_RS00400 0.16 +0.1
75,181 - MMJJ_RS00400 0.45 -0.1
75,211 - MMJJ_RS00400 0.61 +0.8
75,212 + MMJJ_RS00400 0.61 -0.5
75,215 - MMJJ_RS00400 0.63 +0.3
75,215 - MMJJ_RS00400 0.63 +0.2
75,266 + MMJJ_RS00400 0.89 +0.1
75,266 + MMJJ_RS00400 0.89 +0.1
75,272 - -0.1
75,300 - -0.6
75,301 + +0.6
75,342 - +0.1
75,343 + +0.5
75,371 - -0.4
75,371 - +0.9
75,434 - MMJJ_RS00405 0.12 -0.4
75,472 + MMJJ_RS00405 0.19 -0.1
75,494 - MMJJ_RS00405 0.22 +0.1
75,540 - MMJJ_RS00405 0.30 -1.4
75,540 - MMJJ_RS00405 0.30 -1.2
75,541 + MMJJ_RS00405 0.30 -0.4
75,541 + MMJJ_RS00405 0.30 -0.1
75,541 + MMJJ_RS00405 0.30 +0.1
75,548 - MMJJ_RS00405 0.32 +0.3
75,596 - MMJJ_RS00405 0.40 -0.7
75,596 - MMJJ_RS00405 0.40 -0.2
75,616 - MMJJ_RS00405 0.43 +0.2
75,616 - MMJJ_RS00405 0.43 +0.0
75,685 + MMJJ_RS00405 0.55 +0.4
75,754 + MMJJ_RS00405 0.67 +0.2
75,781 + MMJJ_RS00405 0.72 -0.1
75,827 + MMJJ_RS00405 0.80 +0.7
75,941 - -0.4
75,942 + +0.3
75,943 - +0.2
75,946 - -0.0
75,947 + -0.2
75,966 - -1.0
75,976 - +0.9
76,026 - -0.4
76,030 + -0.9
76,077 - MMJJ_RS00410 0.21 +0.2
76,082 + MMJJ_RS00410 0.22 -0.4
76,085 + MMJJ_RS00410 0.22 -0.6
76,086 - MMJJ_RS00410 0.23 -0.1
76,086 - MMJJ_RS00410 0.23 -0.5
76,086 - MMJJ_RS00410 0.23 +0.5
76,086 - MMJJ_RS00410 0.23 +0.4
76,102 - MMJJ_RS00410 0.26 -0.8
76,152 - MMJJ_RS00410 0.38 +0.1
76,198 - MMJJ_RS00410 0.49 -0.1
76,198 - MMJJ_RS00410 0.49 -0.4
76,251 - MMJJ_RS00410 0.61 -0.5
76,252 + MMJJ_RS00410 0.61 -0.5
76,268 - MMJJ_RS00410 0.65 +1.3
76,268 - MMJJ_RS00410 0.65 +0.0
76,269 + MMJJ_RS00410 0.65 -0.2
76,269 + MMJJ_RS00410 0.65 +0.1
76,269 + MMJJ_RS00410 0.65 +1.2
76,269 + MMJJ_RS00410 0.65 +0.4

Or see this region's nucleotide sequence