Strain Fitness in Pantoea sp. MT58 around IAI47_15805

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_15800 and IAI47_15805 are separated by 160 nucleotidesIAI47_15805 and IAI47_15810 are separated by 14 nucleotides IAI47_15800: IAI47_15800 - dihydrolipoyl dehydrogenase, at 3,331,825 to 3,333,249 _15800 IAI47_15805: IAI47_15805 - pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase, at 3,333,410 to 3,335,314 _15805 IAI47_15810: IAI47_15810 - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 3,335,329 to 3,337,995 _15810 Position (kb) 3333 3334 3335 3336Strain fitness (log2 ratio) -2 -1 0 1 2at 3333.290 kb on - strandat 3333.290 kb on - strandat 3333.290 kb on - strandat 3333.290 kb on - strandat 3333.290 kb on - strandat 3333.290 kb on - strandat 3333.290 kb on - strandat 3333.292 kb on - strandat 3333.420 kb on - strandat 3334.049 kb on - strand, within IAI47_15805at 3335.316 kb on - strandat 3335.320 kb on + strandat 3335.321 kb on - strandat 3335.321 kb on - strandat 3335.331 kb on - strandat 3335.550 kb on - strandat 3335.631 kb on - strand, within IAI47_15810at 3335.899 kb on - strand, within IAI47_15810at 3335.930 kb on + strand, within IAI47_15810at 3335.962 kb on - strand, within IAI47_15810at 3336.018 kb on - strand, within IAI47_15810at 3336.096 kb on + strand, within IAI47_15810at 3336.237 kb on - strand, within IAI47_15810

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,333,290 - -2.7
3,333,290 - +1.1
3,333,290 - -0.9
3,333,290 - -0.8
3,333,290 - -1.2
3,333,290 - +0.1
3,333,290 - -1.8
3,333,292 - +1.8
3,333,420 - -0.4
3,334,049 - IAI47_15805 0.34 -0.4
3,335,316 - -1.9
3,335,320 + -1.7
3,335,321 - -1.5
3,335,321 - -0.9
3,335,331 - -0.4
3,335,550 - -2.0
3,335,631 - IAI47_15810 0.11 +0.4
3,335,899 - IAI47_15810 0.21 -0.4
3,335,930 + IAI47_15810 0.23 -1.7
3,335,962 - IAI47_15810 0.24 -1.7
3,336,018 - IAI47_15810 0.26 -1.4
3,336,096 + IAI47_15810 0.29 -1.2
3,336,237 - IAI47_15810 0.34 +0.1

Or see this region's nucleotide sequence