Strain Fitness in Pantoea sp. MT58 around IAI47_11435

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_11430 and IAI47_11435 are separated by 236 nucleotidesIAI47_11435 and IAI47_11440 are separated by 394 nucleotides IAI47_11430: IAI47_11430 - RHS domain-containing protein, at 2,415,980 to 2,416,668 _11430 IAI47_11435: IAI47_11435 - hypothetical protein, at 2,416,905 to 2,417,261 _11435 IAI47_11440: IAI47_11440 - RHS repeat protein, at 2,417,656 to 2,421,300 _11440 Position (kb) 2416 2417 2418Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2415.940 kb on + strandat 2415.970 kb on + strandat 2415.970 kb on + strandat 2415.980 kb on + strandat 2415.980 kb on + strandat 2415.981 kb on - strandat 2415.992 kb on - strandat 2415.992 kb on - strandat 2415.992 kb on - strandat 2416.026 kb on + strandat 2416.046 kb on - strandat 2416.046 kb on - strandat 2416.103 kb on + strand, within IAI47_11430at 2416.103 kb on + strand, within IAI47_11430at 2416.103 kb on + strand, within IAI47_11430at 2416.108 kb on + strand, within IAI47_11430at 2416.108 kb on + strand, within IAI47_11430at 2416.108 kb on + strand, within IAI47_11430at 2416.109 kb on - strand, within IAI47_11430at 2416.109 kb on - strand, within IAI47_11430at 2416.109 kb on - strand, within IAI47_11430at 2416.109 kb on - strand, within IAI47_11430at 2416.143 kb on - strand, within IAI47_11430at 2416.192 kb on + strand, within IAI47_11430at 2416.192 kb on + strand, within IAI47_11430at 2416.203 kb on + strand, within IAI47_11430at 2416.203 kb on + strand, within IAI47_11430at 2416.267 kb on + strand, within IAI47_11430at 2416.267 kb on + strand, within IAI47_11430at 2416.267 kb on + strand, within IAI47_11430at 2416.267 kb on + strand, within IAI47_11430at 2416.268 kb on - strand, within IAI47_11430at 2416.268 kb on - strand, within IAI47_11430at 2416.268 kb on - strand, within IAI47_11430at 2416.293 kb on - strand, within IAI47_11430at 2416.434 kb on + strand, within IAI47_11430at 2416.434 kb on + strand, within IAI47_11430at 2416.434 kb on + strand, within IAI47_11430at 2416.490 kb on + strand, within IAI47_11430at 2416.490 kb on + strand, within IAI47_11430at 2416.496 kb on + strand, within IAI47_11430at 2416.496 kb on + strand, within IAI47_11430at 2416.496 kb on + strand, within IAI47_11430at 2416.496 kb on + strand, within IAI47_11430at 2416.496 kb on + strand, within IAI47_11430at 2416.566 kb on + strand, within IAI47_11430at 2416.566 kb on + strand, within IAI47_11430at 2416.566 kb on + strand, within IAI47_11430at 2416.567 kb on - strand, within IAI47_11430at 2416.567 kb on - strand, within IAI47_11430at 2416.612 kb on - strandat 2416.638 kb on + strandat 2416.646 kb on + strandat 2416.734 kb on + strandat 2416.734 kb on + strandat 2416.734 kb on + strandat 2416.734 kb on + strandat 2416.734 kb on + strandat 2416.735 kb on - strandat 2416.735 kb on - strandat 2416.735 kb on - strandat 2416.754 kb on + strandat 2416.754 kb on + strandat 2416.754 kb on + strandat 2416.754 kb on + strandat 2416.755 kb on - strandat 2416.756 kb on + strandat 2416.756 kb on + strandat 2416.756 kb on + strandat 2416.756 kb on + strandat 2416.756 kb on + strandat 2416.756 kb on + strandat 2416.756 kb on + strandat 2416.757 kb on - strandat 2416.757 kb on - strandat 2416.757 kb on - strandat 2416.757 kb on - strandat 2416.757 kb on - strandat 2416.757 kb on - strandat 2416.812 kb on + strandat 2416.813 kb on - strandat 2416.821 kb on + strandat 2416.821 kb on + strandat 2416.821 kb on + strandat 2416.822 kb on - strandat 2416.853 kb on + strandat 2416.853 kb on + strandat 2416.854 kb on - strandat 2416.879 kb on + strandat 2416.879 kb on + strandat 2416.907 kb on - strandat 2416.918 kb on + strandat 2417.283 kb on + strandat 2417.317 kb on - strandat 2417.339 kb on - strandat 2417.345 kb on - strandat 2417.382 kb on + strandat 2417.385 kb on + strandat 2417.398 kb on - strandat 2417.449 kb on + strandat 2417.449 kb on + strandat 2417.450 kb on - strandat 2417.450 kb on - strandat 2417.450 kb on - strandat 2417.481 kb on + strandat 2417.491 kb on - strandat 2417.517 kb on + strandat 2417.559 kb on + strandat 2417.560 kb on - strandat 2417.562 kb on + strandat 2417.562 kb on + strandat 2417.563 kb on - strandat 2417.563 kb on - strandat 2417.563 kb on - strandat 2417.563 kb on - strandat 2417.587 kb on + strandat 2417.623 kb on + strandat 2417.624 kb on - strandat 2417.624 kb on - strandat 2417.699 kb on + strandat 2417.699 kb on + strandat 2417.699 kb on + strandat 2417.771 kb on + strandat 2417.771 kb on + strandat 2417.771 kb on + strandat 2417.771 kb on + strandat 2417.789 kb on + strandat 2417.789 kb on + strandat 2417.789 kb on + strandat 2417.789 kb on + strandat 2417.789 kb on + strandat 2417.789 kb on + strandat 2417.817 kb on - strandat 2417.817 kb on - strandat 2417.878 kb on + strandat 2417.880 kb on + strandat 2417.889 kb on + strandat 2417.974 kb on - strandat 2417.986 kb on - strandat 2418.120 kb on + strand, within IAI47_11440at 2418.132 kb on + strand, within IAI47_11440at 2418.132 kb on + strand, within IAI47_11440at 2418.182 kb on + strand, within IAI47_11440at 2418.182 kb on + strand, within IAI47_11440at 2418.182 kb on + strand, within IAI47_11440at 2418.252 kb on + strand, within IAI47_11440at 2418.252 kb on + strand, within IAI47_11440

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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2,415,940 + -1.6
2,415,970 + -0.1
2,415,970 + +0.1
2,415,980 + +2.7
2,415,980 + -2.0
2,415,981 - +1.7
2,415,992 - -0.5
2,415,992 - -0.2
2,415,992 - -1.9
2,416,026 + +2.5
2,416,046 - +0.4
2,416,046 - -0.4
2,416,103 + IAI47_11430 0.18 +0.2
2,416,103 + IAI47_11430 0.18 -1.0
2,416,103 + IAI47_11430 0.18 -1.3
2,416,108 + IAI47_11430 0.19 +1.4
2,416,108 + IAI47_11430 0.19 +0.3
2,416,108 + IAI47_11430 0.19 -1.9
2,416,109 - IAI47_11430 0.19 +1.4
2,416,109 - IAI47_11430 0.19 +0.9
2,416,109 - IAI47_11430 0.19 -0.1
2,416,109 - IAI47_11430 0.19 +0.9
2,416,143 - IAI47_11430 0.24 +1.9
2,416,192 + IAI47_11430 0.31 -1.5
2,416,192 + IAI47_11430 0.31 -0.4
2,416,203 + IAI47_11430 0.32 +0.9
2,416,203 + IAI47_11430 0.32 +1.8
2,416,267 + IAI47_11430 0.42 -0.7
2,416,267 + IAI47_11430 0.42 +0.4
2,416,267 + IAI47_11430 0.42 +0.2
2,416,267 + IAI47_11430 0.42 +0.4
2,416,268 - IAI47_11430 0.42 +0.8
2,416,268 - IAI47_11430 0.42 +0.2
2,416,268 - IAI47_11430 0.42 +0.3
2,416,293 - IAI47_11430 0.45 +0.3
2,416,434 + IAI47_11430 0.66 -0.8
2,416,434 + IAI47_11430 0.66 -0.9
2,416,434 + IAI47_11430 0.66 +0.6
2,416,490 + IAI47_11430 0.74 -2.1
2,416,490 + IAI47_11430 0.74 +0.8
2,416,496 + IAI47_11430 0.75 +0.6
2,416,496 + IAI47_11430 0.75 +0.6
2,416,496 + IAI47_11430 0.75 -0.4
2,416,496 + IAI47_11430 0.75 -0.2
2,416,496 + IAI47_11430 0.75 +2.6
2,416,566 + IAI47_11430 0.85 +0.4
2,416,566 + IAI47_11430 0.85 -0.2
2,416,566 + IAI47_11430 0.85 -0.5
2,416,567 - IAI47_11430 0.85 +0.1
2,416,567 - IAI47_11430 0.85 +0.6
2,416,612 - +0.2
2,416,638 + +1.0
2,416,646 + -0.6
2,416,734 + -0.5
2,416,734 + -1.7
2,416,734 + +0.3
2,416,734 + -0.9
2,416,734 + +0.4
2,416,735 - +0.1
2,416,735 - -0.6
2,416,735 - +0.0
2,416,754 + -0.4
2,416,754 + +0.9
2,416,754 + +0.8
2,416,754 + +0.2
2,416,755 - -0.9
2,416,756 + +0.9
2,416,756 + -0.5
2,416,756 + +1.1
2,416,756 + -0.0
2,416,756 + -0.7
2,416,756 + -0.3
2,416,756 + +0.5
2,416,757 - +0.4
2,416,757 - -0.7
2,416,757 - -0.1
2,416,757 - +0.2
2,416,757 - -0.3
2,416,757 - -0.7
2,416,812 + +0.7
2,416,813 - -0.7
2,416,821 + +0.2
2,416,821 + +0.4
2,416,821 + +0.4
2,416,822 - -1.7
2,416,853 + +0.7
2,416,853 + -0.3
2,416,854 - +1.3
2,416,879 + +2.9
2,416,879 + -0.1
2,416,907 - -0.1
2,416,918 + +0.1
2,417,283 + +1.4
2,417,317 - +0.7
2,417,339 - +0.3
2,417,345 - +0.1
2,417,382 + -0.0
2,417,385 + +0.9
2,417,398 - +1.2
2,417,449 + +0.9
2,417,449 + +0.9
2,417,450 - -1.1
2,417,450 - -0.8
2,417,450 - +1.9
2,417,481 + +0.1
2,417,491 - -0.4
2,417,517 + -0.6
2,417,559 + -0.6
2,417,560 - +0.7
2,417,562 + -0.4
2,417,562 + +0.5
2,417,563 - +0.7
2,417,563 - -0.8
2,417,563 - -0.3
2,417,563 - -0.1
2,417,587 + -0.4
2,417,623 + +0.7
2,417,624 - +0.2
2,417,624 - -0.1
2,417,699 + +0.6
2,417,699 + +0.3
2,417,699 + -0.6
2,417,771 + -0.4
2,417,771 + +0.5
2,417,771 + -1.4
2,417,771 + -1.1
2,417,789 + -0.1
2,417,789 + +1.7
2,417,789 + +1.0
2,417,789 + -1.4
2,417,789 + +0.2
2,417,789 + -1.5
2,417,817 - -3.0
2,417,817 - -1.3
2,417,878 + +0.4
2,417,880 + +0.3
2,417,889 + -0.1
2,417,974 - +1.3
2,417,986 - +1.3
2,418,120 + IAI47_11440 0.13 +0.1
2,418,132 + IAI47_11440 0.13 -1.8
2,418,132 + IAI47_11440 0.13 -3.1
2,418,182 + IAI47_11440 0.14 -0.1
2,418,182 + IAI47_11440 0.14 +0.4
2,418,182 + IAI47_11440 0.14 +0.4
2,418,252 + IAI47_11440 0.16 +0.1
2,418,252 + IAI47_11440 0.16 +0.1

Or see this region's nucleotide sequence