Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23875 and HSERO_RS23880 are separated by 35 nucleotides HSERO_RS23880 and HSERO_RS23885 are separated by 217 nucleotides HSERO_RS23885 and HSERO_RS23890 are separated by 88 nucleotides HSERO_RS23890 and HSERO_RS23895 are separated by 271 nucleotides
HSERO_RS23875: HSERO_RS23875 - lipoate-protein ligase B, at 5,473,531 to 5,474,223
_RS23875
HSERO_RS23880: HSERO_RS23880 - hypothetical protein, at 5,474,259 to 5,474,615
_RS23880
HSERO_RS23885: HSERO_RS23885 - XRE family transcriptional regulator, at 5,474,833 to 5,475,753
_RS23885
HSERO_RS23890: HSERO_RS23890 - hypothetical protein, at 5,475,842 to 5,476,123
_RS23890
HSERO_RS23895: HSERO_RS23895 - amidophosphoribosyltransferase, at 5,476,395 to 5,476,973
_RS23895
Position (kb) 5474
5475
5476 Strain fitness (log2 ratio) -2
-1
0
1 at 5474.494 kb on + strand, within HSERO_RS23880 at 5474.512 kb on + strand, within HSERO_RS23880 at 5474.515 kb on - strand, within HSERO_RS23880 at 5474.520 kb on - strand, within HSERO_RS23880 at 5474.525 kb on - strand, within HSERO_RS23880 at 5474.530 kb on - strand, within HSERO_RS23880 at 5474.538 kb on + strand, within HSERO_RS23880 at 5474.541 kb on - strand, within HSERO_RS23880 at 5474.592 kb on + strand at 5474.593 kb on - strand at 5474.659 kb on + strand at 5474.673 kb on + strand at 5474.681 kb on - strand at 5474.767 kb on - strand at 5474.837 kb on - strand at 5474.934 kb on - strand, within HSERO_RS23885 at 5475.089 kb on + strand, within HSERO_RS23885 at 5475.159 kb on - strand, within HSERO_RS23885 at 5475.169 kb on - strand, within HSERO_RS23885 at 5475.268 kb on + strand, within HSERO_RS23885 at 5475.315 kb on + strand, within HSERO_RS23885 at 5475.464 kb on + strand, within HSERO_RS23885 at 5475.530 kb on - strand, within HSERO_RS23885 at 5475.537 kb on + strand, within HSERO_RS23885 at 5475.545 kb on - strand, within HSERO_RS23885 at 5476.287 kb on + strand at 5476.337 kb on + strand at 5476.461 kb on + strand, within HSERO_RS23895 at 5476.471 kb on + strand, within HSERO_RS23895 at 5476.499 kb on + strand, within HSERO_RS23895 at 5476.594 kb on - strand, within HSERO_RS23895 at 5476.700 kb on - strand, within HSERO_RS23895 at 5476.745 kb on + strand, within HSERO_RS23895
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 5,474,494 + HSERO_RS23880 0.66 +0.4 5,474,512 + HSERO_RS23880 0.71 -0.2 5,474,515 - HSERO_RS23880 0.72 -0.6 5,474,520 - HSERO_RS23880 0.73 -1.7 5,474,525 - HSERO_RS23880 0.75 -0.4 5,474,530 - HSERO_RS23880 0.76 +0.3 5,474,538 + HSERO_RS23880 0.78 -0.4 5,474,541 - HSERO_RS23880 0.79 -0.5 5,474,592 + -0.6 5,474,593 - +0.3 5,474,659 + +0.1 5,474,673 + -0.7 5,474,681 - +0.4 5,474,767 - +1.5 5,474,837 - +0.2 5,474,934 - HSERO_RS23885 0.11 +0.8 5,475,089 + HSERO_RS23885 0.28 +0.5 5,475,159 - HSERO_RS23885 0.35 +0.6 5,475,169 - HSERO_RS23885 0.36 -0.0 5,475,268 + HSERO_RS23885 0.47 -0.5 5,475,315 + HSERO_RS23885 0.52 -0.2 5,475,464 + HSERO_RS23885 0.69 -0.2 5,475,530 - HSERO_RS23885 0.76 +0.0 5,475,537 + HSERO_RS23885 0.76 -1.6 5,475,545 - HSERO_RS23885 0.77 -2.0 5,476,287 + -0.0 5,476,337 + -0.6 5,476,461 + HSERO_RS23895 0.11 -0.6 5,476,471 + HSERO_RS23895 0.13 +1.0 5,476,499 + HSERO_RS23895 0.18 +0.6 5,476,594 - HSERO_RS23895 0.34 +0.3 5,476,700 - HSERO_RS23895 0.53 -0.2 5,476,745 + HSERO_RS23895 0.60 +0.1
Or see this region's nucleotide sequence