Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19640

Experiment: A22 0.02 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.02 mg/ml
4,504,349	+		HSERO_RS19635	0.27	-0.0
4,504,598	+		HSERO_RS19635	0.51	-0.7
4,504,606	-		HSERO_RS19635	0.52	-0.2
4,504,606	-		HSERO_RS19635	0.52	-0.4
4,504,606	-		HSERO_RS19635	0.52	+0.2
4,504,634	-		HSERO_RS19635	0.54	-0.2
4,504,648	+				+2.0
4,504,683	+		HSERO_RS19635	0.59	+1.3
4,504,696	-		HSERO_RS19635	0.60	-0.1
4,504,790	-		HSERO_RS19635	0.69	-2.0
4,504,875	-		HSERO_RS19635	0.77	+0.2
4,504,894	+		HSERO_RS19635	0.79	+0.4
4,504,967	-		HSERO_RS19635	0.85	+0.2
4,505,077	-				+0.5
4,505,216	+				+0.2
4,505,224	-				-0.1
4,505,260	+				-0.6
4,505,260	-				+0.4
4,505,458	+				+1.0
4,505,628	-		HSERO_RS19640	0.18	-0.2
4,505,642	+		HSERO_RS19640	0.18	-0.9
4,505,887	-		HSERO_RS19640	0.33	-2.3
4,506,009	+		HSERO_RS19640	0.41	-2.2
4,506,044	+				-1.1
4,506,170	+		HSERO_RS19640	0.51	-0.4
4,506,199	-		HSERO_RS19640	0.53	+0.4
4,506,250	-		HSERO_RS19640	0.56	-0.4
4,506,260	-		HSERO_RS19640	0.56	-0.6
4,506,290	+		HSERO_RS19640	0.58	+0.1
4,506,365	+		HSERO_RS19640	0.63	+0.6
4,506,428	-		HSERO_RS19640	0.67	-0.9
4,506,451	-		HSERO_RS19640	0.68	-0.5
4,506,548	-		HSERO_RS19640	0.74	-0.1
4,506,643	-		HSERO_RS19640	0.80	-0.3
4,506,643	-		HSERO_RS19640	0.80	-0.4
4,506,691	-		HSERO_RS19640	0.83	+0.1
4,506,770	-		HSERO_RS19640	0.88	-0.5
4,506,968	+				+0.3
4,507,195	+				-0.0
4,507,662	-				+0.5
4,507,662	-				+0.2
4,507,662	-				+1.0