Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17660

Experiment: A22 0.02 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.02 mg/ml
4,054,532	-		HSERO_RS17655	0.55	-1.8
4,054,581	+		HSERO_RS17655	0.57	+0.3
4,054,591	+		HSERO_RS17655	0.58	-1.0
4,054,593	+		HSERO_RS17655	0.58	+1.7
4,054,599	-		HSERO_RS17655	0.58	+0.1
4,054,803	+		HSERO_RS17655	0.68	-0.1
4,054,839	+		HSERO_RS17655	0.70	-0.9
4,054,891	-		HSERO_RS17655	0.73	+0.9
4,054,918	+		HSERO_RS17655	0.74	+0.7
4,054,926	-		HSERO_RS17655	0.74	-0.0
4,055,030	-		HSERO_RS17655	0.79	-0.2
4,055,032	+		HSERO_RS17655	0.80	+0.8
4,055,115	+		HSERO_RS17655	0.84	-0.9
4,055,120	+		HSERO_RS17655	0.84	+0.3
4,055,120	+		HSERO_RS17655	0.84	+0.1
4,055,347	+				+1.0
4,055,415	-				-0.7
4,055,443	+				+0.8
4,055,446	-				-0.9
4,055,446	-				-0.3
4,055,480	-				-0.7
4,055,667	-		HSERO_RS17660	0.14	-0.8
4,055,667	-		HSERO_RS17660	0.14	+1.1
4,055,667	-		HSERO_RS17660	0.14	+1.0
4,055,702	+		HSERO_RS17660	0.17	-0.2
4,055,811	+		HSERO_RS17660	0.25	-0.2
4,056,012	-		HSERO_RS17660	0.41	+0.2
4,056,063	+		HSERO_RS17660	0.45	+1.4
4,056,071	-		HSERO_RS17660	0.46	-0.1
4,056,071	-		HSERO_RS17660	0.46	+0.2
4,056,246	-		HSERO_RS17660	0.60	+0.4
4,056,293	-		HSERO_RS17660	0.63	+1.8
4,056,337	-		HSERO_RS17660	0.67	-0.5
4,056,345	+		HSERO_RS17660	0.67	+0.0
4,056,360	+		HSERO_RS17660	0.69	+0.4
4,056,470	-		HSERO_RS17660	0.77	-0.4
4,056,517	+		HSERO_RS17660	0.81	+0.6
4,056,538	+		HSERO_RS17660	0.83	-0.3
4,056,611	+		HSERO_RS17660	0.89	-0.6
4,056,632	+				+0.0
4,056,632	+				-0.2
4,056,743	-				+0.5
4,056,838	-				+0.2
4,056,838	-				-0.1
4,056,917	+		HSERO_RS17665	0.15	+0.1
4,056,917	+		HSERO_RS17665	0.15	+0.9
4,056,925	-		HSERO_RS17665	0.16	-0.2
4,056,932	+		HSERO_RS17665	0.18	+0.7
4,057,214	+		HSERO_RS17665	0.68	-0.4
4,057,216	-		HSERO_RS17665	0.69	-0.3
4,057,332	+		HSERO_RS17665	0.89	-0.5
4,057,480	+				+0.2
4,057,527	-				+1.5
4,057,570	+				-0.7