Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08720

Experiment: A22 0.02 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.02 mg/ml
1,977,117	-				+0.9
1,977,216	-		HSERO_RS08715	0.11	+0.3
1,977,246	+		HSERO_RS08715	0.14	-0.1
1,977,248	+		HSERO_RS08715	0.15	+0.6
1,977,318	-		HSERO_RS08715	0.22	-0.1
1,977,374	-		HSERO_RS08715	0.28	+0.7
1,977,501	-		HSERO_RS08715	0.42	-0.1
1,977,885	+		HSERO_RS08715	0.83	-0.2
1,977,890	+		HSERO_RS08715	0.84	-0.8
1,977,959	-				-0.7
1,978,520	-		HSERO_RS08720	0.36	-0.3
1,978,635	+		HSERO_RS08720	0.45	-0.3
1,978,652	+		HSERO_RS08720	0.46	-0.1
1,978,707	+		HSERO_RS08720	0.50	-2.3
1,979,163	+		HSERO_RS08720	0.85	+0.3
1,979,253	-				+0.8
1,979,253	-				-0.9
1,979,514	-				+0.1
1,979,561	+				+0.8
1,979,607	-				+0.2
1,979,607	-				-0.3
1,979,699	+		HSERO_RS08725	0.20	-1.8
1,979,837	+		HSERO_RS08725	0.36	+1.4
1,979,911	-		HSERO_RS08725	0.44	+1.7
1,979,932	+		HSERO_RS08725	0.47	+1.3