Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04800

Experiment: A22 0.02 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.02 mg/ml
1,049,376	-		HSERO_RS04790	0.89	+1.2
1,049,386	-				+0.4
1,049,412	+				-0.4
1,049,594	-		HSERO_RS04795	0.11	-0.7
1,049,653	+		HSERO_RS04795	0.19	+0.3
1,049,672	-		HSERO_RS04795	0.21	-1.6
1,049,696	-		HSERO_RS04795	0.24	-0.6
1,049,787	-		HSERO_RS04795	0.36	-0.5
1,049,887	-		HSERO_RS04795	0.49	+0.3
1,049,892	+		HSERO_RS04795	0.50	-0.2
1,050,031	-		HSERO_RS04795	0.68	-0.8
1,050,102	-		HSERO_RS04795	0.78	-0.9
1,050,124	-		HSERO_RS04795	0.81	+0.8
1,050,161	+		HSERO_RS04795	0.85	+1.2
1,050,161	-		HSERO_RS04795	0.85	-0.3
1,050,196	+				+0.2
1,050,266	+				-1.5
1,050,289	-				+0.3
1,050,291	+				-0.2
1,050,334	-				+0.4
1,050,393	+		HSERO_RS04800	0.13	-0.2
1,050,590	-		HSERO_RS04800	0.34	-0.6
1,050,717	+		HSERO_RS04800	0.48	+0.2
1,050,735	-		HSERO_RS04800	0.50	+0.5
1,050,803	-		HSERO_RS04800	0.57	+0.8
1,050,983	+		HSERO_RS04800	0.77	+0.0
1,051,020	-		HSERO_RS04800	0.81	-0.1
1,051,031	-				+0.6
1,051,130	-				-0.3
1,051,171	+				+0.2
1,051,254	+				-1.6
1,051,283	+				-1.8
1,051,440	+				-0.3
1,051,448	-				+0.2
1,051,477	-				-2.3
1,051,482	-				-0.2
1,051,562	+		HSERO_RS04805	0.13	-1.2
1,051,577	+		HSERO_RS04805	0.15	-1.3
1,051,585	-		HSERO_RS04805	0.16	+0.5
1,051,585	-		HSERO_RS04805	0.16	+0.3
1,051,595	-		HSERO_RS04805	0.17	-0.6
1,051,709	+				-1.1
1,051,714	+		HSERO_RS04805	0.31	+0.5
1,051,747	-		HSERO_RS04805	0.34	-0.3
1,051,840	+		HSERO_RS04805	0.45	+0.2
1,052,053	-		HSERO_RS04805	0.70	-2.3
1,052,129	+		HSERO_RS04805	0.79	-0.5