Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04780

Experiment: A22 0.02 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.02 mg/ml
1,044,913	+				-0.1
1,044,941	+				-0.4
1,045,163	+		HSERO_RS04775	0.34	-1.3
1,045,171	-		HSERO_RS04775	0.35	+0.3
1,045,234	-		HSERO_RS04775	0.42	+0.4
1,045,482	+		HSERO_RS04775	0.70	-0.4
1,045,490	-		HSERO_RS04775	0.71	+0.2
1,045,502	-		HSERO_RS04775	0.72	-0.2
1,045,822	+				+1.8
1,045,830	-				+1.2
1,045,871	+		HSERO_RS04780	0.11	+0.0
1,045,879	-		HSERO_RS04780	0.12	-1.3
1,045,926	-		HSERO_RS04780	0.16	-1.0
1,046,482	-		HSERO_RS04780	0.70	-0.5
1,046,495	-		HSERO_RS04780	0.71	+0.4
1,046,525	-		HSERO_RS04780	0.74	-0.0
1,046,636	+		HSERO_RS04780	0.84	-1.1
1,046,702	+				+1.1
1,046,710	-				-0.3
1,046,944	+				+0.4
1,046,979	+				+3.3
1,046,987	+				-0.3
1,046,987	+				+0.2
1,047,066	-		HSERO_RS04785	0.14	+0.5
1,047,108	-		HSERO_RS04785	0.17	+0.1
1,047,147	-		HSERO_RS04785	0.20	+1.2
1,047,157	+		HSERO_RS04785	0.21	-1.4
1,047,184	+		HSERO_RS04785	0.23	+0.0
1,047,375	-		HSERO_RS04785	0.37	+0.2
1,047,392	+		HSERO_RS04785	0.38	+0.3
1,047,617	-		HSERO_RS04785	0.56	-0.4
1,047,708	+		HSERO_RS04785	0.62	-0.1
1,047,781	-		HSERO_RS04785	0.68	-2.5