Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04415 and HSERO_RS04420 are separated by 313 nucleotides HSERO_RS04420 and HSERO_RS04425 are separated by 121 nucleotides HSERO_RS04425 and HSERO_RS04430 are separated by 0 nucleotides
HSERO_RS04415: HSERO_RS04415 - hypothetical protein, at 975,053 to 975,295
_RS04415
HSERO_RS04420: HSERO_RS04420 - DNA-binding transcriptional regulator, at 975,609 to 976,046
_RS04420
HSERO_RS04425: HSERO_RS04425 - phage-encoded membrane protein, at 976,168 to 976,833
_RS04425
HSERO_RS04430: HSERO_RS04430 - phage late control protein, at 976,834 to 978,063
_RS04430
Position (kb) 976
977 Strain fitness (log2 ratio) -2
-1
0
1 at 975.171 kb on - strand, within HSERO_RS04415 at 975.171 kb on - strand, within HSERO_RS04415 at 975.171 kb on - strand at 975.171 kb on - strand, within HSERO_RS04415 at 975.173 kb on - strand, within HSERO_RS04415 at 975.173 kb on - strand, within HSERO_RS04415 at 975.173 kb on - strand, within HSERO_RS04415 at 975.183 kb on + strand, within HSERO_RS04415 at 975.301 kb on + strand at 975.310 kb on - strand at 975.310 kb on - strand at 975.335 kb on - strand at 975.352 kb on - strand at 975.396 kb on + strand at 975.396 kb on + strand at 975.404 kb on - strand at 975.404 kb on - strand at 976.066 kb on + strand at 976.082 kb on + strand at 976.089 kb on + strand at 976.089 kb on + strand at 976.089 kb on - strand at 976.091 kb on + strand at 976.094 kb on - strand at 976.094 kb on - strand at 976.094 kb on - strand at 976.097 kb on - strand at 976.099 kb on - strand at 976.099 kb on - strand at 976.127 kb on + strand at 976.127 kb on + strand at 976.136 kb on - strand at 976.141 kb on + strand at 976.141 kb on - strand at 976.141 kb on - strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.149 kb on + strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.168 kb on - strand at 976.168 kb on - strand at 976.186 kb on + strand at 976.196 kb on + strand at 976.199 kb on - strand at 976.199 kb on - strand at 976.201 kb on - strand at 976.206 kb on + strand at 976.220 kb on + strand at 976.228 kb on - strand at 976.229 kb on - strand at 976.239 kb on + strand, within HSERO_RS04425 at 976.239 kb on + strand, within HSERO_RS04425 at 976.264 kb on - strand, within HSERO_RS04425 at 976.273 kb on + strand, within HSERO_RS04425 at 976.281 kb on - strand, within HSERO_RS04425 at 976.285 kb on + strand, within HSERO_RS04425 at 976.292 kb on + strand, within HSERO_RS04425 at 976.292 kb on + strand, within HSERO_RS04425 at 976.292 kb on + strand, within HSERO_RS04425 at 976.300 kb on - strand, within HSERO_RS04425 at 976.300 kb on - strand, within HSERO_RS04425 at 976.300 kb on - strand, within HSERO_RS04425 at 976.308 kb on - strand, within HSERO_RS04425 at 976.329 kb on + strand, within HSERO_RS04425 at 976.336 kb on - strand, within HSERO_RS04425 at 976.337 kb on - strand, within HSERO_RS04425 at 976.355 kb on + strand, within HSERO_RS04425 at 976.355 kb on + strand, within HSERO_RS04425 at 976.363 kb on - strand, within HSERO_RS04425 at 976.410 kb on - strand, within HSERO_RS04425 at 976.422 kb on + strand, within HSERO_RS04425 at 976.434 kb on + strand, within HSERO_RS04425 at 976.436 kb on + strand, within HSERO_RS04425 at 976.443 kb on + strand, within HSERO_RS04425 at 976.451 kb on - strand, within HSERO_RS04425 at 976.469 kb on - strand, within HSERO_RS04425 at 976.471 kb on + strand, within HSERO_RS04425 at 976.479 kb on - strand, within HSERO_RS04425 at 976.490 kb on - strand, within HSERO_RS04425 at 976.498 kb on + strand, within HSERO_RS04425 at 976.506 kb on - strand, within HSERO_RS04425 at 976.537 kb on - strand, within HSERO_RS04425 at 976.575 kb on + strand, within HSERO_RS04425 at 976.638 kb on + strand, within HSERO_RS04425 at 976.640 kb on - strand, within HSERO_RS04425 at 976.646 kb on - strand, within HSERO_RS04425 at 976.685 kb on + strand, within HSERO_RS04425 at 976.685 kb on + strand, within HSERO_RS04425 at 976.687 kb on + strand, within HSERO_RS04425 at 976.687 kb on + strand, within HSERO_RS04425 at 976.693 kb on - strand, within HSERO_RS04425 at 976.693 kb on - strand, within HSERO_RS04425 at 976.747 kb on + strand, within HSERO_RS04425 at 976.751 kb on + strand, within HSERO_RS04425 at 976.752 kb on + strand, within HSERO_RS04425 at 976.767 kb on - strand at 976.832 kb on + strand at 976.841 kb on + strand at 976.849 kb on - strand at 976.849 kb on - strand at 976.888 kb on + strand at 976.888 kb on + strand at 976.896 kb on - strand at 976.896 kb on - strand at 976.896 kb on - strand at 976.924 kb on + strand at 976.933 kb on - strand at 976.943 kb on + strand at 976.979 kb on - strand, within HSERO_RS04430 at 977.008 kb on - strand at 977.008 kb on - strand, within HSERO_RS04430 at 977.268 kb on - strand, within HSERO_RS04430 at 977.312 kb on - strand, within HSERO_RS04430 at 977.361 kb on + strand, within HSERO_RS04430 at 977.474 kb on + strand, within HSERO_RS04430 at 977.547 kb on + strand, within HSERO_RS04430 at 977.603 kb on - strand, within HSERO_RS04430 at 977.626 kb on + strand, within HSERO_RS04430
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 975,171 - HSERO_RS04415 0.49 -0.2 975,171 - HSERO_RS04415 0.49 -0.4 975,171 - +1.2 975,171 - HSERO_RS04415 0.49 -0.9 975,173 - HSERO_RS04415 0.49 -0.6 975,173 - HSERO_RS04415 0.49 -0.1 975,173 - HSERO_RS04415 0.49 +0.6 975,183 + HSERO_RS04415 0.53 -0.0 975,301 + -0.4 975,310 - +0.3 975,310 - -0.1 975,335 - -0.1 975,352 - -1.9 975,396 + -0.4 975,396 + -0.2 975,404 - +0.1 975,404 - +0.0 976,066 + +0.9 976,082 + -0.4 976,089 + -0.1 976,089 + -0.2 976,089 - +0.3 976,091 + -0.5 976,094 - +0.2 976,094 - -0.5 976,094 - +0.4 976,097 - +1.2 976,099 - -0.3 976,099 - +0.2 976,127 + -1.2 976,127 + +0.0 976,136 - -1.2 976,141 + +0.0 976,141 - +0.4 976,141 - +0.8 976,147 + -1.3 976,147 + +0.5 976,147 + +0.0 976,147 + -2.6 976,147 + -0.3 976,147 + -0.7 976,147 + +0.3 976,147 + +1.3 976,147 + +0.7 976,147 + +1.0 976,147 + -0.2 976,147 + -0.2 976,147 + -0.1 976,149 + +0.1 976,155 - +0.4 976,155 - -1.7 976,155 - -0.1 976,155 - +0.8 976,155 - -0.3 976,155 - +0.5 976,155 - +0.0 976,155 - -0.3 976,155 - -0.0 976,155 - -0.9 976,155 - -0.0 976,155 - -0.3 976,168 - +0.4 976,168 - -0.0 976,186 + +0.1 976,196 + -1.6 976,199 - +0.0 976,199 - -0.6 976,201 - +0.6 976,206 + +0.8 976,220 + -0.3 976,228 - -0.2 976,229 - -0.2 976,239 + HSERO_RS04425 0.11 -0.2 976,239 + HSERO_RS04425 0.11 -0.1 976,264 - HSERO_RS04425 0.14 -0.6 976,273 + HSERO_RS04425 0.16 -1.4 976,281 - HSERO_RS04425 0.17 +0.7 976,285 + HSERO_RS04425 0.18 +0.5 976,292 + HSERO_RS04425 0.19 +0.5 976,292 + HSERO_RS04425 0.19 +0.3 976,292 + HSERO_RS04425 0.19 -0.1 976,300 - HSERO_RS04425 0.20 +0.7 976,300 - HSERO_RS04425 0.20 +0.7 976,300 - HSERO_RS04425 0.20 -0.8 976,308 - HSERO_RS04425 0.21 -0.8 976,329 + HSERO_RS04425 0.24 -1.4 976,336 - HSERO_RS04425 0.25 +0.8 976,337 - HSERO_RS04425 0.25 +0.8 976,355 + HSERO_RS04425 0.28 -0.4 976,355 + HSERO_RS04425 0.28 +0.3 976,363 - HSERO_RS04425 0.29 -0.2 976,410 - HSERO_RS04425 0.36 -0.8 976,422 + HSERO_RS04425 0.38 +0.2 976,434 + HSERO_RS04425 0.40 +0.3 976,436 + HSERO_RS04425 0.40 +0.1 976,443 + HSERO_RS04425 0.41 -0.4 976,451 - HSERO_RS04425 0.42 -0.6 976,469 - HSERO_RS04425 0.45 -0.6 976,471 + HSERO_RS04425 0.45 +0.1 976,479 - HSERO_RS04425 0.47 -0.2 976,490 - HSERO_RS04425 0.48 +0.3 976,498 + HSERO_RS04425 0.50 +0.2 976,506 - HSERO_RS04425 0.51 +1.3 976,537 - HSERO_RS04425 0.55 +0.4 976,575 + HSERO_RS04425 0.61 -0.1 976,638 + HSERO_RS04425 0.71 +0.4 976,640 - HSERO_RS04425 0.71 -0.4 976,646 - HSERO_RS04425 0.72 -0.4 976,685 + HSERO_RS04425 0.78 -0.0 976,685 + HSERO_RS04425 0.78 +1.7 976,687 + HSERO_RS04425 0.78 +0.7 976,687 + HSERO_RS04425 0.78 +0.2 976,693 - HSERO_RS04425 0.79 +0.5 976,693 - HSERO_RS04425 0.79 -0.5 976,747 + HSERO_RS04425 0.87 -0.2 976,751 + HSERO_RS04425 0.88 +0.1 976,752 + HSERO_RS04425 0.88 +0.1 976,767 - +0.2 976,832 + +0.1 976,841 + -0.4 976,849 - -0.1 976,849 - -0.0 976,888 + -0.3 976,888 + -2.3 976,896 - -1.4 976,896 - +1.0 976,896 - +1.0 976,924 + -0.5 976,933 - +0.2 976,943 + +0.8 976,979 - HSERO_RS04430 0.12 +0.7 977,008 - +0.2 977,008 - HSERO_RS04430 0.14 -0.1 977,268 - HSERO_RS04430 0.35 -0.2 977,312 - HSERO_RS04430 0.39 -0.5 977,361 + HSERO_RS04430 0.43 +0.9 977,474 + HSERO_RS04430 0.52 +1.1 977,547 + HSERO_RS04430 0.58 +0.9 977,603 - HSERO_RS04430 0.63 +0.3 977,626 + HSERO_RS04430 0.64 +0.0
Or see this region's nucleotide sequence