Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30120 and AO356_30125 are separated by 591 nucleotides AO356_30125 and AO356_30130 are separated by 1 nucleotides
AO356_30120: AO356_30120 - sarcosine oxidase, at 7,030,130 to 7,030,714
_30120
AO356_30125: AO356_30125 - xylose isomerase, at 7,031,306 to 7,032,142
_30125
AO356_30130: AO356_30130 - pyridine nucleotide-disulfide oxidoreductase, at 7,032,144 to 7,033,376
_30130
Position (kb) 7031
7032
7033 Strain fitness (log2 ratio) -2
-1
0
1 at 7030.349 kb on + strand, within AO356_30120 at 7030.433 kb on + strand, within AO356_30120 at 7030.433 kb on + strand, within AO356_30120 at 7030.434 kb on - strand, within AO356_30120 at 7030.434 kb on - strand, within AO356_30120 at 7030.732 kb on - strand at 7030.732 kb on - strand at 7030.779 kb on + strand at 7030.780 kb on - strand at 7030.780 kb on - strand at 7030.780 kb on - strand at 7030.780 kb on - strand at 7030.880 kb on + strand at 7031.012 kb on - strand at 7031.077 kb on + strand at 7031.078 kb on - strand at 7031.108 kb on + strand at 7031.108 kb on + strand at 7031.108 kb on + strand at 7031.109 kb on - strand at 7031.119 kb on + strand at 7031.119 kb on + strand at 7031.119 kb on + strand at 7031.191 kb on + strand at 7031.202 kb on + strand at 7031.203 kb on - strand at 7031.256 kb on + strand at 7031.256 kb on + strand at 7031.256 kb on + strand at 7031.256 kb on + strand at 7031.259 kb on - strand at 7031.275 kb on + strand at 7031.303 kb on - strand at 7031.384 kb on + strand at 7031.416 kb on - strand, within AO356_30125 at 7031.570 kb on - strand, within AO356_30125 at 7031.570 kb on - strand, within AO356_30125 at 7031.570 kb on - strand, within AO356_30125 at 7031.607 kb on - strand, within AO356_30125 at 7031.607 kb on - strand, within AO356_30125 at 7031.607 kb on - strand, within AO356_30125 at 7031.673 kb on + strand, within AO356_30125 at 7031.673 kb on + strand, within AO356_30125 at 7031.674 kb on - strand, within AO356_30125 at 7032.156 kb on + strand at 7032.311 kb on - strand, within AO356_30130 at 7032.311 kb on - strand, within AO356_30130 at 7032.401 kb on - strand, within AO356_30130 at 7032.401 kb on - strand, within AO356_30130 at 7032.741 kb on + strand, within AO356_30130 at 7032.741 kb on + strand, within AO356_30130 at 7032.757 kb on - strand, within AO356_30130 at 7032.828 kb on + strand, within AO356_30130 at 7032.828 kb on + strand, within AO356_30130 at 7032.997 kb on + strand, within AO356_30130 at 7032.998 kb on - strand, within AO356_30130 at 7033.065 kb on + strand, within AO356_30130 at 7033.066 kb on - strand, within AO356_30130 at 7033.066 kb on - strand, within AO356_30130
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 7,030,349 + AO356_30120 0.37 +0.1 7,030,433 + AO356_30120 0.52 +0.1 7,030,433 + AO356_30120 0.52 -0.4 7,030,434 - AO356_30120 0.52 -0.0 7,030,434 - AO356_30120 0.52 -0.3 7,030,732 - -1.1 7,030,732 - +0.6 7,030,779 + -0.8 7,030,780 - -0.2 7,030,780 - -0.6 7,030,780 - -0.5 7,030,780 - +0.5 7,030,880 + +0.6 7,031,012 - +0.6 7,031,077 + +0.2 7,031,078 - +0.5 7,031,108 + +0.3 7,031,108 + +1.1 7,031,108 + +1.2 7,031,109 - -0.5 7,031,119 + +0.8 7,031,119 + +0.3 7,031,119 + +0.9 7,031,191 + +0.9 7,031,202 + +0.8 7,031,203 - -0.1 7,031,256 + -1.5 7,031,256 + -0.4 7,031,256 + -0.2 7,031,256 + +0.5 7,031,259 - -0.3 7,031,275 + +1.3 7,031,303 - -1.8 7,031,384 + -0.3 7,031,416 - AO356_30125 0.13 -0.3 7,031,570 - AO356_30125 0.32 +0.1 7,031,570 - AO356_30125 0.32 +0.0 7,031,570 - AO356_30125 0.32 +0.2 7,031,607 - AO356_30125 0.36 +0.1 7,031,607 - AO356_30125 0.36 +0.1 7,031,607 - AO356_30125 0.36 -0.8 7,031,673 + AO356_30125 0.44 +0.0 7,031,673 + AO356_30125 0.44 +0.7 7,031,674 - AO356_30125 0.44 -0.2 7,032,156 + +0.2 7,032,311 - AO356_30130 0.14 -0.6 7,032,311 - AO356_30130 0.14 +1.5 7,032,401 - AO356_30130 0.21 -0.7 7,032,401 - AO356_30130 0.21 -2.2 7,032,741 + AO356_30130 0.48 -0.1 7,032,741 + AO356_30130 0.48 -0.7 7,032,757 - AO356_30130 0.50 -0.4 7,032,828 + AO356_30130 0.55 +0.5 7,032,828 + AO356_30130 0.55 -0.3 7,032,997 + AO356_30130 0.69 -0.3 7,032,998 - AO356_30130 0.69 -1.1 7,033,065 + AO356_30130 0.75 +0.6 7,033,066 - AO356_30130 0.75 -0.1 7,033,066 - AO356_30130 0.75 +0.5
Or see this region's nucleotide sequence