Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28595

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28590 and AO356_28595 are separated by 75 nucleotidesAO356_28595 and AO356_28600 are separated by 16 nucleotidesAO356_28600 and AO356_28605 are separated by 167 nucleotides AO356_28590: AO356_28590 - sucrose alpha-glucosidase (EC 3.2.1.48) (from data), at 6,645,342 to 6,646,844 _28590 AO356_28595: AO356_28595 - transcriptional regulator, at 6,646,920 to 6,647,912 _28595 AO356_28600: AO356_28600 - TetR family transcriptional regulator, at 6,647,929 to 6,648,516 _28600 AO356_28605: AO356_28605 - N-ethylmaleimide reductase, at 6,648,684 to 6,649,778 _28605 Position (kb) 6646 6647 6648Strain fitness (log2 ratio) -2 -1 0 1at 6645.979 kb on - strand, within AO356_28590at 6645.979 kb on - strand, within AO356_28590at 6645.979 kb on - strand, within AO356_28590at 6646.009 kb on - strand, within AO356_28590at 6646.062 kb on + strand, within AO356_28590at 6646.062 kb on + strand, within AO356_28590at 6646.063 kb on - strand, within AO356_28590at 6646.063 kb on - strand, within AO356_28590at 6646.110 kb on + strand, within AO356_28590at 6646.110 kb on + strand, within AO356_28590at 6646.200 kb on + strand, within AO356_28590at 6646.744 kb on - strandat 6647.389 kb on - strand, within AO356_28595at 6647.590 kb on - strand, within AO356_28595at 6647.621 kb on + strand, within AO356_28595at 6647.745 kb on + strand, within AO356_28595at 6647.745 kb on + strand, within AO356_28595at 6648.264 kb on - strand, within AO356_28600at 6648.713 kb on + strandat 6648.713 kb on + strandat 6648.714 kb on - strandat 6648.714 kb on - strandat 6648.813 kb on + strand, within AO356_28605at 6648.813 kb on + strand, within AO356_28605at 6648.906 kb on + strand, within AO356_28605at 6648.907 kb on - strand, within AO356_28605at 6648.907 kb on - strand, within AO356_28605

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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6,645,979 - AO356_28590 0.42 +0.5
6,645,979 - AO356_28590 0.42 +0.2
6,645,979 - AO356_28590 0.42 +1.3
6,646,009 - AO356_28590 0.44 -0.3
6,646,062 + AO356_28590 0.48 +1.0
6,646,062 + AO356_28590 0.48 +0.7
6,646,063 - AO356_28590 0.48 -0.7
6,646,063 - AO356_28590 0.48 -0.5
6,646,110 + AO356_28590 0.51 -0.4
6,646,110 + AO356_28590 0.51 +0.4
6,646,200 + AO356_28590 0.57 +0.6
6,646,744 - +0.3
6,647,389 - AO356_28595 0.47 -2.6
6,647,590 - AO356_28595 0.67 -0.8
6,647,621 + AO356_28595 0.71 -1.7
6,647,745 + AO356_28595 0.83 -0.4
6,647,745 + AO356_28595 0.83 -0.0
6,648,264 - AO356_28600 0.57 -0.0
6,648,713 + -1.1
6,648,713 + +0.5
6,648,714 - -1.2
6,648,714 - +1.1
6,648,813 + AO356_28605 0.12 -0.0
6,648,813 + AO356_28605 0.12 +0.2
6,648,906 + AO356_28605 0.20 +1.2
6,648,907 - AO356_28605 0.20 +0.2
6,648,907 - AO356_28605 0.20 -0.5

Or see this region's nucleotide sequence