Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28590 and AO356_28595 are separated by 75 nucleotides AO356_28595 and AO356_28600 are separated by 16 nucleotides AO356_28600 and AO356_28605 are separated by 167 nucleotides
AO356_28590: AO356_28590 - sucrose alpha-glucosidase (EC 3.2.1.48) (from data) , at 6,645,342 to 6,646,844
_28590
AO356_28595: AO356_28595 - transcriptional regulator, at 6,646,920 to 6,647,912
_28595
AO356_28600: AO356_28600 - TetR family transcriptional regulator, at 6,647,929 to 6,648,516
_28600
AO356_28605: AO356_28605 - N-ethylmaleimide reductase, at 6,648,684 to 6,649,778
_28605
Position (kb)
6646
6647
6648 Strain fitness (log2 ratio)
-2
-1
0
1 at 6645.979 kb on - strand, within AO356_28590 at 6645.979 kb on - strand, within AO356_28590 at 6645.979 kb on - strand, within AO356_28590 at 6646.009 kb on - strand, within AO356_28590 at 6646.062 kb on + strand, within AO356_28590 at 6646.062 kb on + strand, within AO356_28590 at 6646.063 kb on - strand, within AO356_28590 at 6646.063 kb on - strand, within AO356_28590 at 6646.110 kb on + strand, within AO356_28590 at 6646.110 kb on + strand, within AO356_28590 at 6646.200 kb on + strand, within AO356_28590 at 6646.744 kb on - strand at 6647.389 kb on - strand, within AO356_28595 at 6647.590 kb on - strand, within AO356_28595 at 6647.621 kb on + strand, within AO356_28595 at 6647.745 kb on + strand, within AO356_28595 at 6647.745 kb on + strand, within AO356_28595 at 6648.264 kb on - strand, within AO356_28600 at 6648.713 kb on + strand at 6648.713 kb on + strand at 6648.714 kb on - strand at 6648.714 kb on - strand at 6648.813 kb on + strand, within AO356_28605 at 6648.813 kb on + strand, within AO356_28605 at 6648.906 kb on + strand, within AO356_28605 at 6648.907 kb on - strand, within AO356_28605 at 6648.907 kb on - strand, within AO356_28605
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 6,645,979 - AO356_28590 0.42 +0.5 6,645,979 - AO356_28590 0.42 +0.2 6,645,979 - AO356_28590 0.42 +1.3 6,646,009 - AO356_28590 0.44 -0.3 6,646,062 + AO356_28590 0.48 +1.0 6,646,062 + AO356_28590 0.48 +0.7 6,646,063 - AO356_28590 0.48 -0.7 6,646,063 - AO356_28590 0.48 -0.5 6,646,110 + AO356_28590 0.51 -0.4 6,646,110 + AO356_28590 0.51 +0.4 6,646,200 + AO356_28590 0.57 +0.6 6,646,744 - +0.3 6,647,389 - AO356_28595 0.47 -2.6 6,647,590 - AO356_28595 0.67 -0.8 6,647,621 + AO356_28595 0.71 -1.7 6,647,745 + AO356_28595 0.83 -0.4 6,647,745 + AO356_28595 0.83 -0.0 6,648,264 - AO356_28600 0.57 -0.0 6,648,713 + -1.1 6,648,713 + +0.5 6,648,714 - -1.2 6,648,714 - +1.1 6,648,813 + AO356_28605 0.12 -0.0 6,648,813 + AO356_28605 0.12 +0.2 6,648,906 + AO356_28605 0.20 +1.2 6,648,907 - AO356_28605 0.20 +0.2 6,648,907 - AO356_28605 0.20 -0.5
Or see this region's nucleotide sequence