Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23525

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23515 and AO356_23520 are separated by 61 nucleotidesAO356_23520 and AO356_23525 are separated by 2 nucleotidesAO356_23525 and AO356_23530 are separated by 246 nucleotides AO356_23515: AO356_23515 - ABC transporter substrate-binding protein, at 5,272,783 to 5,273,553 _23515 AO356_23520: AO356_23520 - fructoselysine kinase, at 5,273,615 to 5,274,469 _23520 AO356_23525: AO356_23525 - phosphosugar isomerase, at 5,274,472 to 5,275,485 _23525 AO356_23530: AO356_23530 - GntR family transcriptional regulator, at 5,275,732 to 5,276,523 _23530 Position (kb) 5274 5275 5276Strain fitness (log2 ratio) -1 0 1 2at 5273.544 kb on - strandat 5273.544 kb on - strandat 5273.580 kb on - strandat 5274.103 kb on - strand, within AO356_23520at 5274.138 kb on + strand, within AO356_23520at 5274.138 kb on + strand, within AO356_23520at 5274.138 kb on + strand, within AO356_23520at 5274.139 kb on - strand, within AO356_23520at 5274.139 kb on - strand, within AO356_23520at 5274.307 kb on - strand, within AO356_23520at 5274.343 kb on - strand, within AO356_23520at 5274.375 kb on - strand, within AO356_23520at 5274.406 kb on - strandat 5274.426 kb on + strandat 5274.427 kb on - strandat 5274.477 kb on - strandat 5274.494 kb on + strandat 5274.572 kb on + strandat 5274.572 kb on + strandat 5274.573 kb on - strandat 5274.573 kb on - strandat 5274.635 kb on + strand, within AO356_23525at 5274.836 kb on + strand, within AO356_23525at 5274.836 kb on + strand, within AO356_23525at 5274.836 kb on + strand, within AO356_23525at 5274.836 kb on + strand, within AO356_23525at 5274.837 kb on - strand, within AO356_23525at 5274.837 kb on - strand, within AO356_23525at 5274.837 kb on - strand, within AO356_23525at 5274.872 kb on + strand, within AO356_23525at 5274.872 kb on + strand, within AO356_23525at 5274.873 kb on - strand, within AO356_23525at 5274.873 kb on - strand, within AO356_23525at 5274.873 kb on - strand, within AO356_23525at 5274.873 kb on - strand, within AO356_23525at 5274.893 kb on + strand, within AO356_23525at 5274.927 kb on + strand, within AO356_23525at 5274.928 kb on - strand, within AO356_23525at 5275.061 kb on + strand, within AO356_23525at 5275.061 kb on + strand, within AO356_23525at 5275.061 kb on + strand, within AO356_23525at 5275.062 kb on - strand, within AO356_23525at 5275.074 kb on + strand, within AO356_23525at 5275.142 kb on - strand, within AO356_23525at 5275.308 kb on - strand, within AO356_23525at 5275.323 kb on - strand, within AO356_23525at 5275.370 kb on + strand, within AO356_23525at 5275.371 kb on - strand, within AO356_23525at 5275.371 kb on - strand, within AO356_23525at 5275.371 kb on - strand, within AO356_23525at 5275.371 kb on - strand, within AO356_23525at 5275.506 kb on - strandat 5275.593 kb on + strandat 5275.646 kb on + strandat 5275.647 kb on - strandat 5275.647 kb on - strandat 5275.647 kb on - strandat 5275.647 kb on - strandat 5275.647 kb on - strandat 5275.647 kb on - strandat 5275.647 kb on - strandat 5275.647 kb on - strandat 5275.675 kb on - strandat 5275.714 kb on + strandat 5276.031 kb on + strand, within AO356_23530at 5276.032 kb on - strand, within AO356_23530at 5276.032 kb on - strand, within AO356_23530at 5276.073 kb on + strand, within AO356_23530at 5276.073 kb on + strand, within AO356_23530at 5276.074 kb on - strand, within AO356_23530at 5276.209 kb on + strand, within AO356_23530at 5276.210 kb on - strand, within AO356_23530at 5276.210 kb on - strand, within AO356_23530at 5276.272 kb on + strand, within AO356_23530at 5276.272 kb on + strand, within AO356_23530at 5276.272 kb on + strand, within AO356_23530at 5276.273 kb on - strand, within AO356_23530at 5276.273 kb on - strand, within AO356_23530at 5276.273 kb on - strand, within AO356_23530at 5276.273 kb on - strand, within AO356_23530at 5276.273 kb on - strand, within AO356_23530at 5276.306 kb on + strand, within AO356_23530at 5276.307 kb on - strand, within AO356_23530at 5276.441 kb on - strand, within AO356_23530

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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5,273,544 - -0.3
5,273,544 - -0.2
5,273,580 - -0.5
5,274,103 - AO356_23520 0.57 -0.5
5,274,138 + AO356_23520 0.61 +0.0
5,274,138 + AO356_23520 0.61 -0.3
5,274,138 + AO356_23520 0.61 -0.1
5,274,139 - AO356_23520 0.61 -0.0
5,274,139 - AO356_23520 0.61 +0.4
5,274,307 - AO356_23520 0.81 +0.0
5,274,343 - AO356_23520 0.85 -0.8
5,274,375 - AO356_23520 0.89 -1.1
5,274,406 - -0.4
5,274,426 + -0.7
5,274,427 - +0.1
5,274,477 - +0.2
5,274,494 + +0.4
5,274,572 + +0.2
5,274,572 + +0.3
5,274,573 - -0.2
5,274,573 - -1.0
5,274,635 + AO356_23525 0.16 +0.2
5,274,836 + AO356_23525 0.36 +0.4
5,274,836 + AO356_23525 0.36 +0.5
5,274,836 + AO356_23525 0.36 +0.5
5,274,836 + AO356_23525 0.36 +0.1
5,274,837 - AO356_23525 0.36 +0.6
5,274,837 - AO356_23525 0.36 +1.1
5,274,837 - AO356_23525 0.36 -1.0
5,274,872 + AO356_23525 0.39 +1.7
5,274,872 + AO356_23525 0.39 +0.8
5,274,873 - AO356_23525 0.40 +0.2
5,274,873 - AO356_23525 0.40 -0.3
5,274,873 - AO356_23525 0.40 -0.0
5,274,873 - AO356_23525 0.40 +0.1
5,274,893 + AO356_23525 0.42 -0.0
5,274,927 + AO356_23525 0.45 -1.7
5,274,928 - AO356_23525 0.45 -0.3
5,275,061 + AO356_23525 0.58 +0.3
5,275,061 + AO356_23525 0.58 +1.0
5,275,061 + AO356_23525 0.58 -0.5
5,275,062 - AO356_23525 0.58 -0.0
5,275,074 + AO356_23525 0.59 +0.0
5,275,142 - AO356_23525 0.66 +0.4
5,275,308 - AO356_23525 0.82 +0.3
5,275,323 - AO356_23525 0.84 -0.8
5,275,370 + AO356_23525 0.89 +0.4
5,275,371 - AO356_23525 0.89 +0.3
5,275,371 - AO356_23525 0.89 +0.0
5,275,371 - AO356_23525 0.89 -0.0
5,275,371 - AO356_23525 0.89 -0.7
5,275,506 - -0.3
5,275,593 + -0.1
5,275,646 + +0.7
5,275,647 - +1.1
5,275,647 - -1.0
5,275,647 - -0.2
5,275,647 - -0.4
5,275,647 - +0.5
5,275,647 - -0.0
5,275,647 - -0.6
5,275,647 - +0.3
5,275,675 - -1.3
5,275,714 + +0.2
5,276,031 + AO356_23530 0.38 +0.1
5,276,032 - AO356_23530 0.38 +0.5
5,276,032 - AO356_23530 0.38 -0.0
5,276,073 + AO356_23530 0.43 -0.8
5,276,073 + AO356_23530 0.43 -0.6
5,276,074 - AO356_23530 0.43 +0.2
5,276,209 + AO356_23530 0.60 +2.0
5,276,210 - AO356_23530 0.60 +0.5
5,276,210 - AO356_23530 0.60 +0.3
5,276,272 + AO356_23530 0.68 -0.6
5,276,272 + AO356_23530 0.68 -0.3
5,276,272 + AO356_23530 0.68 -0.0
5,276,273 - AO356_23530 0.68 -0.3
5,276,273 - AO356_23530 0.68 -0.4
5,276,273 - AO356_23530 0.68 -0.1
5,276,273 - AO356_23530 0.68 -0.3
5,276,273 - AO356_23530 0.68 -0.1
5,276,306 + AO356_23530 0.72 +0.4
5,276,307 - AO356_23530 0.73 +0.0
5,276,441 - AO356_23530 0.90 -0.0

Or see this region's nucleotide sequence