Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23515 and AO356_23520 are separated by 61 nucleotides AO356_23520 and AO356_23525 are separated by 2 nucleotides AO356_23525 and AO356_23530 are separated by 246 nucleotides
AO356_23515: AO356_23515 - ABC transporter substrate-binding protein, at 5,272,783 to 5,273,553
_23515
AO356_23520: AO356_23520 - fructoselysine kinase, at 5,273,615 to 5,274,469
_23520
AO356_23525: AO356_23525 - phosphosugar isomerase, at 5,274,472 to 5,275,485
_23525
AO356_23530: AO356_23530 - GntR family transcriptional regulator, at 5,275,732 to 5,276,523
_23530
Position (kb)
5274
5275
5276 Strain fitness (log2 ratio)
-1
0
1
2 at 5273.544 kb on - strand at 5273.544 kb on - strand at 5273.580 kb on - strand at 5274.103 kb on - strand, within AO356_23520 at 5274.138 kb on + strand, within AO356_23520 at 5274.138 kb on + strand, within AO356_23520 at 5274.138 kb on + strand, within AO356_23520 at 5274.139 kb on - strand, within AO356_23520 at 5274.139 kb on - strand, within AO356_23520 at 5274.307 kb on - strand, within AO356_23520 at 5274.343 kb on - strand, within AO356_23520 at 5274.375 kb on - strand, within AO356_23520 at 5274.406 kb on - strand at 5274.426 kb on + strand at 5274.427 kb on - strand at 5274.477 kb on - strand at 5274.494 kb on + strand at 5274.572 kb on + strand at 5274.572 kb on + strand at 5274.573 kb on - strand at 5274.573 kb on - strand at 5274.635 kb on + strand, within AO356_23525 at 5274.836 kb on + strand, within AO356_23525 at 5274.836 kb on + strand, within AO356_23525 at 5274.836 kb on + strand, within AO356_23525 at 5274.836 kb on + strand, within AO356_23525 at 5274.837 kb on - strand, within AO356_23525 at 5274.837 kb on - strand, within AO356_23525 at 5274.837 kb on - strand, within AO356_23525 at 5274.872 kb on + strand, within AO356_23525 at 5274.872 kb on + strand, within AO356_23525 at 5274.873 kb on - strand, within AO356_23525 at 5274.873 kb on - strand, within AO356_23525 at 5274.873 kb on - strand, within AO356_23525 at 5274.873 kb on - strand, within AO356_23525 at 5274.893 kb on + strand, within AO356_23525 at 5274.927 kb on + strand, within AO356_23525 at 5274.928 kb on - strand, within AO356_23525 at 5275.061 kb on + strand, within AO356_23525 at 5275.061 kb on + strand, within AO356_23525 at 5275.061 kb on + strand, within AO356_23525 at 5275.062 kb on - strand, within AO356_23525 at 5275.074 kb on + strand, within AO356_23525 at 5275.142 kb on - strand, within AO356_23525 at 5275.308 kb on - strand, within AO356_23525 at 5275.323 kb on - strand, within AO356_23525 at 5275.370 kb on + strand, within AO356_23525 at 5275.371 kb on - strand, within AO356_23525 at 5275.371 kb on - strand, within AO356_23525 at 5275.371 kb on - strand, within AO356_23525 at 5275.371 kb on - strand, within AO356_23525 at 5275.506 kb on - strand at 5275.593 kb on + strand at 5275.646 kb on + strand at 5275.647 kb on - strand at 5275.647 kb on - strand at 5275.647 kb on - strand at 5275.647 kb on - strand at 5275.647 kb on - strand at 5275.647 kb on - strand at 5275.647 kb on - strand at 5275.647 kb on - strand at 5275.675 kb on - strand at 5275.714 kb on + strand at 5276.031 kb on + strand, within AO356_23530 at 5276.032 kb on - strand, within AO356_23530 at 5276.032 kb on - strand, within AO356_23530 at 5276.073 kb on + strand, within AO356_23530 at 5276.073 kb on + strand, within AO356_23530 at 5276.074 kb on - strand, within AO356_23530 at 5276.209 kb on + strand, within AO356_23530 at 5276.210 kb on - strand, within AO356_23530 at 5276.210 kb on - strand, within AO356_23530 at 5276.272 kb on + strand, within AO356_23530 at 5276.272 kb on + strand, within AO356_23530 at 5276.272 kb on + strand, within AO356_23530 at 5276.273 kb on - strand, within AO356_23530 at 5276.273 kb on - strand, within AO356_23530 at 5276.273 kb on - strand, within AO356_23530 at 5276.273 kb on - strand, within AO356_23530 at 5276.273 kb on - strand, within AO356_23530 at 5276.306 kb on + strand, within AO356_23530 at 5276.307 kb on - strand, within AO356_23530 at 5276.441 kb on - strand, within AO356_23530
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 5,273,544 - -0.3 5,273,544 - -0.2 5,273,580 - -0.5 5,274,103 - AO356_23520 0.57 -0.5 5,274,138 + AO356_23520 0.61 +0.0 5,274,138 + AO356_23520 0.61 -0.3 5,274,138 + AO356_23520 0.61 -0.1 5,274,139 - AO356_23520 0.61 -0.0 5,274,139 - AO356_23520 0.61 +0.4 5,274,307 - AO356_23520 0.81 +0.0 5,274,343 - AO356_23520 0.85 -0.8 5,274,375 - AO356_23520 0.89 -1.1 5,274,406 - -0.4 5,274,426 + -0.7 5,274,427 - +0.1 5,274,477 - +0.2 5,274,494 + +0.4 5,274,572 + +0.2 5,274,572 + +0.3 5,274,573 - -0.2 5,274,573 - -1.0 5,274,635 + AO356_23525 0.16 +0.2 5,274,836 + AO356_23525 0.36 +0.4 5,274,836 + AO356_23525 0.36 +0.5 5,274,836 + AO356_23525 0.36 +0.5 5,274,836 + AO356_23525 0.36 +0.1 5,274,837 - AO356_23525 0.36 +0.6 5,274,837 - AO356_23525 0.36 +1.1 5,274,837 - AO356_23525 0.36 -1.0 5,274,872 + AO356_23525 0.39 +1.7 5,274,872 + AO356_23525 0.39 +0.8 5,274,873 - AO356_23525 0.40 +0.2 5,274,873 - AO356_23525 0.40 -0.3 5,274,873 - AO356_23525 0.40 -0.0 5,274,873 - AO356_23525 0.40 +0.1 5,274,893 + AO356_23525 0.42 -0.0 5,274,927 + AO356_23525 0.45 -1.7 5,274,928 - AO356_23525 0.45 -0.3 5,275,061 + AO356_23525 0.58 +0.3 5,275,061 + AO356_23525 0.58 +1.0 5,275,061 + AO356_23525 0.58 -0.5 5,275,062 - AO356_23525 0.58 -0.0 5,275,074 + AO356_23525 0.59 +0.0 5,275,142 - AO356_23525 0.66 +0.4 5,275,308 - AO356_23525 0.82 +0.3 5,275,323 - AO356_23525 0.84 -0.8 5,275,370 + AO356_23525 0.89 +0.4 5,275,371 - AO356_23525 0.89 +0.3 5,275,371 - AO356_23525 0.89 +0.0 5,275,371 - AO356_23525 0.89 -0.0 5,275,371 - AO356_23525 0.89 -0.7 5,275,506 - -0.3 5,275,593 + -0.1 5,275,646 + +0.7 5,275,647 - +1.1 5,275,647 - -1.0 5,275,647 - -0.2 5,275,647 - -0.4 5,275,647 - +0.5 5,275,647 - -0.0 5,275,647 - -0.6 5,275,647 - +0.3 5,275,675 - -1.3 5,275,714 + +0.2 5,276,031 + AO356_23530 0.38 +0.1 5,276,032 - AO356_23530 0.38 +0.5 5,276,032 - AO356_23530 0.38 -0.0 5,276,073 + AO356_23530 0.43 -0.8 5,276,073 + AO356_23530 0.43 -0.6 5,276,074 - AO356_23530 0.43 +0.2 5,276,209 + AO356_23530 0.60 +2.0 5,276,210 - AO356_23530 0.60 +0.5 5,276,210 - AO356_23530 0.60 +0.3 5,276,272 + AO356_23530 0.68 -0.6 5,276,272 + AO356_23530 0.68 -0.3 5,276,272 + AO356_23530 0.68 -0.0 5,276,273 - AO356_23530 0.68 -0.3 5,276,273 - AO356_23530 0.68 -0.4 5,276,273 - AO356_23530 0.68 -0.1 5,276,273 - AO356_23530 0.68 -0.3 5,276,273 - AO356_23530 0.68 -0.1 5,276,306 + AO356_23530 0.72 +0.4 5,276,307 - AO356_23530 0.73 +0.0 5,276,441 - AO356_23530 0.90 -0.0
Or see this region's nucleotide sequence