Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21490

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21475 and AO356_21480 are separated by 103 nucleotidesAO356_21480 and AO356_21485 are separated by 58 nucleotidesAO356_21485 and AO356_21490 are separated by 89 nucleotidesAO356_21490 and AO356_21495 are separated by 189 nucleotides AO356_21475: AO356_21475 - oxidoreductase, at 4,815,738 to 4,816,511 _21475 AO356_21480: AO356_21480 - tRNA-Val, at 4,816,615 to 4,816,690 _21480 AO356_21485: AO356_21485 - tRNA-Asp, at 4,816,749 to 4,816,825 _21485 AO356_21490: AO356_21490 - tRNA-Asp, at 4,816,915 to 4,816,991 _21490 AO356_21495: AO356_21495 - gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data), at 4,817,181 to 4,818,464 _21495 Position (kb) 4816 4817Strain fitness (log2 ratio) -2 -1 0 1 2at 4816.072 kb on - strand, within AO356_21475at 4816.138 kb on - strand, within AO356_21475at 4816.215 kb on + strand, within AO356_21475at 4816.216 kb on - strand, within AO356_21475at 4816.216 kb on - strand, within AO356_21475at 4816.399 kb on + strand, within AO356_21475at 4816.503 kb on + strandat 4816.503 kb on + strandat 4816.572 kb on - strandat 4816.826 kb on + strandat 4817.026 kb on + strandat 4817.026 kb on + strandat 4817.026 kb on + strandat 4817.026 kb on + strandat 4817.046 kb on + strandat 4817.110 kb on + strandat 4817.195 kb on + strandat 4817.212 kb on + strandat 4817.353 kb on + strand, within AO356_21495at 4817.353 kb on + strand, within AO356_21495at 4817.353 kb on + strand, within AO356_21495at 4817.354 kb on - strand, within AO356_21495at 4817.354 kb on - strand, within AO356_21495at 4817.354 kb on - strand, within AO356_21495at 4817.386 kb on + strand, within AO356_21495at 4817.389 kb on + strand, within AO356_21495at 4817.389 kb on + strand, within AO356_21495at 4817.389 kb on + strand, within AO356_21495at 4817.389 kb on + strand, within AO356_21495at 4817.390 kb on - strand, within AO356_21495at 4817.390 kb on - strand, within AO356_21495at 4817.390 kb on - strand, within AO356_21495at 4817.390 kb on - strand, within AO356_21495at 4817.390 kb on - strand, within AO356_21495at 4817.390 kb on - strand, within AO356_21495at 4817.397 kb on - strand, within AO356_21495at 4817.461 kb on + strand, within AO356_21495at 4817.461 kb on + strand, within AO356_21495at 4817.551 kb on + strand, within AO356_21495at 4817.551 kb on + strand, within AO356_21495at 4817.551 kb on + strand, within AO356_21495at 4817.552 kb on - strand, within AO356_21495at 4817.552 kb on - strand, within AO356_21495at 4817.603 kb on - strand, within AO356_21495at 4817.603 kb on - strand, within AO356_21495at 4817.614 kb on + strand, within AO356_21495at 4817.614 kb on + strand, within AO356_21495at 4817.614 kb on + strand, within AO356_21495at 4817.615 kb on - strand, within AO356_21495at 4817.615 kb on - strand, within AO356_21495at 4817.635 kb on + strand, within AO356_21495at 4817.635 kb on + strand, within AO356_21495at 4817.749 kb on + strand, within AO356_21495at 4817.750 kb on - strand, within AO356_21495at 4817.855 kb on - strand, within AO356_21495at 4817.855 kb on - strand, within AO356_21495at 4817.855 kb on - strand, within AO356_21495at 4817.919 kb on - strand, within AO356_21495at 4817.919 kb on - strand, within AO356_21495at 4817.919 kb on - strand, within AO356_21495at 4817.919 kb on - strand, within AO356_21495at 4817.942 kb on + strand, within AO356_21495at 4817.953 kb on + strand, within AO356_21495at 4817.953 kb on + strand, within AO356_21495at 4817.953 kb on + strand, within AO356_21495at 4817.953 kb on + strand, within AO356_21495at 4817.953 kb on + strand, within AO356_21495at 4817.953 kb on + strand, within AO356_21495at 4817.953 kb on + strand, within AO356_21495at 4817.954 kb on - strand, within AO356_21495at 4817.954 kb on - strand, within AO356_21495at 4817.954 kb on - strand, within AO356_21495at 4817.954 kb on - strand, within AO356_21495at 4817.954 kb on - strand, within AO356_21495at 4817.954 kb on - strand, within AO356_21495at 4817.954 kb on - strand, within AO356_21495at 4817.982 kb on - strand, within AO356_21495

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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4,816,072 - AO356_21475 0.43 +1.0
4,816,138 - AO356_21475 0.52 -0.3
4,816,215 + AO356_21475 0.62 +0.9
4,816,216 - AO356_21475 0.62 +0.2
4,816,216 - AO356_21475 0.62 +0.6
4,816,399 + AO356_21475 0.85 +0.6
4,816,503 + -0.0
4,816,503 + -0.1
4,816,572 - +0.6
4,816,826 + +1.4
4,817,026 + -0.2
4,817,026 + +0.8
4,817,026 + +0.3
4,817,026 + +0.6
4,817,046 + +0.5
4,817,110 + +0.9
4,817,195 + +0.2
4,817,212 + +0.0
4,817,353 + AO356_21495 0.13 +0.7
4,817,353 + AO356_21495 0.13 -0.0
4,817,353 + AO356_21495 0.13 -0.8
4,817,354 - AO356_21495 0.13 +1.4
4,817,354 - AO356_21495 0.13 +0.4
4,817,354 - AO356_21495 0.13 +0.2
4,817,386 + AO356_21495 0.16 +0.8
4,817,389 + AO356_21495 0.16 +0.7
4,817,389 + AO356_21495 0.16 +0.5
4,817,389 + AO356_21495 0.16 -0.3
4,817,389 + AO356_21495 0.16 +1.3
4,817,390 - AO356_21495 0.16 -1.0
4,817,390 - AO356_21495 0.16 +0.1
4,817,390 - AO356_21495 0.16 +1.0
4,817,390 - AO356_21495 0.16 +0.9
4,817,390 - AO356_21495 0.16 -0.5
4,817,390 - AO356_21495 0.16 -0.0
4,817,397 - AO356_21495 0.17 +0.1
4,817,461 + AO356_21495 0.22 -0.6
4,817,461 + AO356_21495 0.22 +0.7
4,817,551 + AO356_21495 0.29 -0.5
4,817,551 + AO356_21495 0.29 +0.3
4,817,551 + AO356_21495 0.29 +0.0
4,817,552 - AO356_21495 0.29 +0.6
4,817,552 - AO356_21495 0.29 +0.2
4,817,603 - AO356_21495 0.33 -0.0
4,817,603 - AO356_21495 0.33 +0.5
4,817,614 + AO356_21495 0.34 +0.1
4,817,614 + AO356_21495 0.34 +0.5
4,817,614 + AO356_21495 0.34 -0.2
4,817,615 - AO356_21495 0.34 -0.5
4,817,615 - AO356_21495 0.34 -0.6
4,817,635 + AO356_21495 0.35 +0.9
4,817,635 + AO356_21495 0.35 -0.4
4,817,749 + AO356_21495 0.44 +0.1
4,817,750 - AO356_21495 0.44 +0.8
4,817,855 - AO356_21495 0.52 +0.4
4,817,855 - AO356_21495 0.52 -1.8
4,817,855 - AO356_21495 0.52 -0.1
4,817,919 - AO356_21495 0.57 +0.1
4,817,919 - AO356_21495 0.57 -0.4
4,817,919 - AO356_21495 0.57 +0.8
4,817,919 - AO356_21495 0.57 -1.4
4,817,942 + AO356_21495 0.59 +0.1
4,817,953 + AO356_21495 0.60 +0.4
4,817,953 + AO356_21495 0.60 -0.2
4,817,953 + AO356_21495 0.60 +0.5
4,817,953 + AO356_21495 0.60 -0.2
4,817,953 + AO356_21495 0.60 +0.3
4,817,953 + AO356_21495 0.60 -0.1
4,817,953 + AO356_21495 0.60 +0.1
4,817,954 - AO356_21495 0.60 +0.2
4,817,954 - AO356_21495 0.60 -0.3
4,817,954 - AO356_21495 0.60 -1.1
4,817,954 - AO356_21495 0.60 -0.1
4,817,954 - AO356_21495 0.60 +1.0
4,817,954 - AO356_21495 0.60 +1.9
4,817,954 - AO356_21495 0.60 -0.6
4,817,982 - AO356_21495 0.62 +0.6

Or see this region's nucleotide sequence