Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_17055 and AO356_17060 are separated by 14 nucleotides AO356_17060 and AO356_17065 are separated by 256 nucleotides AO356_17065 and AO356_17070 overlap by 1 nucleotides
AO356_17055: AO356_17055 - 50S ribosomal protein L13, at 3,841,511 to 3,841,939
_17055
AO356_17060: AO356_17060 - 30S ribosomal protein S9, at 3,841,954 to 3,842,346
_17060
AO356_17065: AO356_17065 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 3,842,603 to 3,843,196
_17065
AO356_17070: AO356_17070 - cytochrome B, at 3,843,196 to 3,844,407
_17070
Position (kb)
3842
3843
3844 Strain fitness (log2 ratio)
-2
-1
0
1 at 3842.452 kb on - strand at 3842.456 kb on + strand at 3842.457 kb on - strand at 3842.457 kb on - strand at 3842.457 kb on - strand at 3842.457 kb on - strand at 3842.457 kb on - strand at 3842.484 kb on + strand at 3842.484 kb on + strand at 3842.484 kb on + strand at 3842.488 kb on + strand at 3842.488 kb on + strand at 3842.488 kb on + strand at 3842.488 kb on + strand at 3842.488 kb on + strand at 3842.488 kb on + strand at 3842.489 kb on - strand at 3842.489 kb on - strand at 3842.489 kb on - strand at 3842.489 kb on - strand at 3842.489 kb on - strand at 3842.536 kb on + strand at 3842.550 kb on + strand at 3842.554 kb on + strand at 3842.557 kb on + strand at 3842.570 kb on + strand at 3842.570 kb on + strand at 3842.903 kb on - strand, within AO356_17065 at 3842.916 kb on - strand, within AO356_17065 at 3842.916 kb on - strand, within AO356_17065 at 3842.916 kb on - strand, within AO356_17065 at 3843.409 kb on + strand, within AO356_17070 at 3843.409 kb on + strand, within AO356_17070 at 3843.490 kb on + strand, within AO356_17070 at 3843.491 kb on - strand, within AO356_17070 at 3843.732 kb on + strand, within AO356_17070
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 3,842,452 - -0.3 3,842,456 + +0.5 3,842,457 - -1.3 3,842,457 - -0.4 3,842,457 - +0.1 3,842,457 - -1.1 3,842,457 - -1.6 3,842,484 + -0.2 3,842,484 + +0.2 3,842,484 + +0.8 3,842,488 + -0.4 3,842,488 + -0.3 3,842,488 + +0.4 3,842,488 + -0.6 3,842,488 + -0.2 3,842,488 + -0.5 3,842,489 - -1.1 3,842,489 - +0.2 3,842,489 - -0.8 3,842,489 - -0.4 3,842,489 - +0.2 3,842,536 + -0.7 3,842,550 + -1.8 3,842,554 + -1.6 3,842,557 + +0.6 3,842,570 + -1.3 3,842,570 + -0.2 3,842,903 - AO356_17065 0.51 -0.9 3,842,916 - AO356_17065 0.53 -0.3 3,842,916 - AO356_17065 0.53 -0.5 3,842,916 - AO356_17065 0.53 +1.1 3,843,409 + AO356_17070 0.18 -1.4 3,843,409 + AO356_17070 0.18 -0.6 3,843,490 + AO356_17070 0.24 -1.1 3,843,491 - AO356_17070 0.24 -1.7 3,843,732 + AO356_17070 0.44 -0.5
Or see this region's nucleotide sequence