Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10310

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10305 and AO356_10310 are separated by 41 nucleotidesAO356_10310 and AO356_10315 are separated by 231 nucleotides AO356_10305: AO356_10305 - FAD-linked oxidase, at 2,324,449 to 2,325,843 _10305 AO356_10310: AO356_10310 - hypothetical protein, at 2,325,885 to 2,326,550 _10310 AO356_10315: AO356_10315 - DNA-binding protein, at 2,326,782 to 2,327,711 _10315 Position (kb) 2325 2326 2327Strain fitness (log2 ratio) -2 -1 0 1 2at 2325.278 kb on - strand, within AO356_10305at 2325.278 kb on - strand, within AO356_10305at 2325.427 kb on + strand, within AO356_10305at 2325.427 kb on + strand, within AO356_10305at 2325.427 kb on + strand, within AO356_10305at 2325.427 kb on + strand, within AO356_10305at 2325.427 kb on + strand, within AO356_10305at 2325.428 kb on - strand, within AO356_10305at 2325.428 kb on - strand, within AO356_10305at 2325.428 kb on - strand, within AO356_10305at 2325.428 kb on - strand, within AO356_10305at 2325.460 kb on + strand, within AO356_10305at 2325.461 kb on - strand, within AO356_10305at 2325.685 kb on + strand, within AO356_10305at 2325.736 kb on + strandat 2325.736 kb on + strandat 2325.736 kb on + strandat 2325.736 kb on + strandat 2325.737 kb on - strandat 2325.745 kb on + strandat 2325.745 kb on + strandat 2325.745 kb on + strandat 2325.745 kb on + strandat 2325.745 kb on + strandat 2325.745 kb on + strandat 2325.745 kb on + strandat 2325.745 kb on + strandat 2325.745 kb on + strandat 2325.745 kb on + strandat 2325.745 kb on + strandat 2325.745 kb on + strandat 2325.746 kb on - strandat 2325.746 kb on - strandat 2325.746 kb on - strandat 2325.746 kb on - strandat 2325.746 kb on - strandat 2325.746 kb on - strandat 2325.746 kb on - strandat 2325.746 kb on - strandat 2325.746 kb on - strandat 2325.746 kb on - strandat 2325.746 kb on - strandat 2325.746 kb on - strandat 2325.746 kb on - strandat 2325.746 kb on - strandat 2325.746 kb on - strandat 2325.746 kb on - strandat 2325.747 kb on + strandat 2325.748 kb on - strandat 2325.772 kb on + strandat 2325.772 kb on + strandat 2325.772 kb on + strandat 2325.772 kb on + strandat 2325.773 kb on - strandat 2325.773 kb on - strandat 2325.844 kb on + strandat 2325.844 kb on + strandat 2325.848 kb on + strandat 2325.848 kb on + strandat 2325.848 kb on + strandat 2325.848 kb on + strandat 2325.848 kb on + strandat 2325.848 kb on + strandat 2325.849 kb on - strandat 2325.849 kb on - strandat 2325.849 kb on - strandat 2325.849 kb on - strandat 2325.849 kb on - strandat 2325.849 kb on - strandat 2325.849 kb on - strandat 2325.849 kb on - strandat 2325.849 kb on - strandat 2325.849 kb on - strandat 2325.849 kb on - strandat 2325.849 kb on - strandat 2325.883 kb on + strandat 2325.891 kb on + strandat 2325.891 kb on + strandat 2325.891 kb on + strandat 2325.891 kb on + strandat 2325.891 kb on + strandat 2325.891 kb on + strandat 2325.891 kb on + strandat 2325.891 kb on + strandat 2325.892 kb on - strandat 2325.892 kb on - strandat 2325.892 kb on - strandat 2325.892 kb on - strandat 2325.903 kb on + strandat 2325.903 kb on + strandat 2325.903 kb on + strandat 2325.904 kb on - strandat 2325.904 kb on - strandat 2325.904 kb on - strandat 2325.914 kb on + strandat 2325.915 kb on - strandat 2325.920 kb on + strandat 2325.920 kb on + strandat 2325.920 kb on + strandat 2325.921 kb on - strandat 2325.921 kb on - strandat 2325.921 kb on - strandat 2325.960 kb on - strand, within AO356_10310at 2325.960 kb on - strand, within AO356_10310at 2325.963 kb on + strand, within AO356_10310at 2326.092 kb on + strand, within AO356_10310at 2326.093 kb on - strand, within AO356_10310at 2326.093 kb on - strand, within AO356_10310at 2326.156 kb on + strand, within AO356_10310at 2326.156 kb on + strand, within AO356_10310at 2326.157 kb on - strand, within AO356_10310at 2326.157 kb on - strand, within AO356_10310at 2326.157 kb on - strand, within AO356_10310at 2326.157 kb on - strand, within AO356_10310at 2326.157 kb on - strand, within AO356_10310at 2326.157 kb on - strand, within AO356_10310at 2326.301 kb on + strand, within AO356_10310at 2326.301 kb on + strand, within AO356_10310at 2326.410 kb on + strand, within AO356_10310at 2326.410 kb on + strand, within AO356_10310at 2326.410 kb on + strand, within AO356_10310at 2326.410 kb on + strand, within AO356_10310at 2326.410 kb on + strand, within AO356_10310at 2326.410 kb on + strand, within AO356_10310at 2326.410 kb on + strand, within AO356_10310at 2326.410 kb on + strand, within AO356_10310at 2326.410 kb on + strand, within AO356_10310at 2326.410 kb on + strand, within AO356_10310at 2326.410 kb on + strand, within AO356_10310at 2326.410 kb on + strand, within AO356_10310at 2326.411 kb on - strand, within AO356_10310at 2326.411 kb on - strand, within AO356_10310at 2326.411 kb on - strand, within AO356_10310at 2326.411 kb on - strand, within AO356_10310at 2326.411 kb on - strand, within AO356_10310at 2326.411 kb on - strand, within AO356_10310at 2326.411 kb on - strand, within AO356_10310at 2326.411 kb on - strand, within AO356_10310at 2326.411 kb on - strand, within AO356_10310at 2326.411 kb on - strand, within AO356_10310at 2326.411 kb on - strand, within AO356_10310at 2326.411 kb on - strand, within AO356_10310at 2326.411 kb on - strand, within AO356_10310at 2326.411 kb on - strand, within AO356_10310at 2326.411 kb on - strand, within AO356_10310at 2326.666 kb on + strandat 2326.666 kb on + strandat 2326.666 kb on + strandat 2326.666 kb on + strandat 2326.666 kb on + strandat 2326.666 kb on + strandat 2326.666 kb on + strandat 2326.666 kb on + strandat 2326.666 kb on + strandat 2326.667 kb on - strandat 2326.667 kb on - strandat 2326.667 kb on - strandat 2326.667 kb on - strandat 2326.667 kb on - strandat 2326.667 kb on - strandat 2326.667 kb on - strandat 2326.667 kb on - strandat 2326.667 kb on - strandat 2326.667 kb on - strandat 2326.667 kb on - strandat 2326.667 kb on - strandat 2326.667 kb on - strandat 2326.667 kb on - strandat 2326.667 kb on - strandat 2326.675 kb on + strandat 2326.675 kb on + strandat 2326.675 kb on + strandat 2326.676 kb on - strandat 2326.676 kb on - strandat 2326.676 kb on - strandat 2326.676 kb on - strandat 2326.687 kb on + strandat 2326.688 kb on - strandat 2326.688 kb on - strandat 2326.845 kb on + strandat 2326.845 kb on + strandat 2326.845 kb on + strandat 2326.846 kb on - strandat 2326.878 kb on + strand, within AO356_10315at 2326.879 kb on - strand, within AO356_10315at 2326.879 kb on - strand, within AO356_10315at 2326.879 kb on - strand, within AO356_10315at 2326.983 kb on + strand, within AO356_10315at 2327.049 kb on + strand, within AO356_10315at 2327.049 kb on + strand, within AO356_10315at 2327.049 kb on + strand, within AO356_10315at 2327.050 kb on - strand, within AO356_10315at 2327.050 kb on - strand, within AO356_10315at 2327.050 kb on - strand, within AO356_10315at 2327.063 kb on + strand, within AO356_10315at 2327.063 kb on + strand, within AO356_10315at 2327.063 kb on + strand, within AO356_10315at 2327.063 kb on + strand, within AO356_10315at 2327.064 kb on - strand, within AO356_10315at 2327.064 kb on - strand, within AO356_10315at 2327.064 kb on - strand, within AO356_10315at 2327.286 kb on + strand, within AO356_10315at 2327.286 kb on + strand, within AO356_10315at 2327.286 kb on + strand, within AO356_10315at 2327.286 kb on + strand, within AO356_10315at 2327.287 kb on - strand, within AO356_10315at 2327.287 kb on - strand, within AO356_10315at 2327.287 kb on - strand, within AO356_10315at 2327.287 kb on - strand, within AO356_10315at 2327.287 kb on - strand, within AO356_10315at 2327.287 kb on - strand, within AO356_10315at 2327.507 kb on + strand, within AO356_10315at 2327.507 kb on + strand, within AO356_10315at 2327.507 kb on + strand, within AO356_10315at 2327.507 kb on + strand, within AO356_10315at 2327.507 kb on + strand, within AO356_10315at 2327.508 kb on - strand, within AO356_10315at 2327.508 kb on - strand, within AO356_10315

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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2,325,278 - AO356_10305 0.59 +0.9
2,325,278 - AO356_10305 0.59 +0.3
2,325,427 + AO356_10305 0.70 -0.6
2,325,427 + AO356_10305 0.70 +0.3
2,325,427 + AO356_10305 0.70 -0.5
2,325,427 + AO356_10305 0.70 +0.6
2,325,427 + AO356_10305 0.70 +1.2
2,325,428 - AO356_10305 0.70 +0.9
2,325,428 - AO356_10305 0.70 +0.9
2,325,428 - AO356_10305 0.70 -1.2
2,325,428 - AO356_10305 0.70 +0.3
2,325,460 + AO356_10305 0.72 -0.3
2,325,461 - AO356_10305 0.73 +0.6
2,325,685 + AO356_10305 0.89 +0.5
2,325,736 + +0.4
2,325,736 + -1.1
2,325,736 + -0.3
2,325,736 + -0.7
2,325,737 - -0.8
2,325,745 + +1.8
2,325,745 + -0.7
2,325,745 + +0.2
2,325,745 + +0.3
2,325,745 + +0.5
2,325,745 + +0.5
2,325,745 + -0.6
2,325,745 + +0.1
2,325,745 + +0.9
2,325,745 + -1.7
2,325,745 + -0.6
2,325,745 + +0.9
2,325,746 - +0.2
2,325,746 - -0.3
2,325,746 - -2.1
2,325,746 - -0.9
2,325,746 - +0.1
2,325,746 - -0.4
2,325,746 - +0.3
2,325,746 - +0.3
2,325,746 - +0.0
2,325,746 - -0.0
2,325,746 - -0.6
2,325,746 - +0.3
2,325,746 - +0.2
2,325,746 - -0.7
2,325,746 - +0.2
2,325,746 - -0.2
2,325,747 + -0.1
2,325,748 - +0.3
2,325,772 + +0.1
2,325,772 + -1.7
2,325,772 + +0.1
2,325,772 + +0.3
2,325,773 - +0.1
2,325,773 - +0.2
2,325,844 + -0.2
2,325,844 + -0.0
2,325,848 + +0.4
2,325,848 + +0.5
2,325,848 + -0.3
2,325,848 + +0.7
2,325,848 + +0.5
2,325,848 + -0.3
2,325,849 - +0.7
2,325,849 - +0.2
2,325,849 - +0.3
2,325,849 - +0.4
2,325,849 - +0.3
2,325,849 - +0.2
2,325,849 - -0.2
2,325,849 - -0.0
2,325,849 - +0.4
2,325,849 - +1.9
2,325,849 - +0.5
2,325,849 - +0.1
2,325,883 + -0.0
2,325,891 + +0.7
2,325,891 + -0.7
2,325,891 + +0.3
2,325,891 + +0.4
2,325,891 + +1.0
2,325,891 + -1.7
2,325,891 + +0.2
2,325,891 + +0.4
2,325,892 - +0.2
2,325,892 - -0.3
2,325,892 - +0.2
2,325,892 - +0.5
2,325,903 + -1.7
2,325,903 + -0.6
2,325,903 + -0.0
2,325,904 - -0.4
2,325,904 - -0.9
2,325,904 - +0.5
2,325,914 + +0.6
2,325,915 - -0.2
2,325,920 + -0.7
2,325,920 + +0.5
2,325,920 + +0.0
2,325,921 - +0.3
2,325,921 - +0.5
2,325,921 - -0.1
2,325,960 - AO356_10310 0.11 +0.8
2,325,960 - AO356_10310 0.11 -0.2
2,325,963 + AO356_10310 0.12 +0.2
2,326,092 + AO356_10310 0.31 +0.7
2,326,093 - AO356_10310 0.31 +0.4
2,326,093 - AO356_10310 0.31 +0.2
2,326,156 + AO356_10310 0.41 -0.9
2,326,156 + AO356_10310 0.41 -0.8
2,326,157 - AO356_10310 0.41 +0.7
2,326,157 - AO356_10310 0.41 +0.4
2,326,157 - AO356_10310 0.41 +0.9
2,326,157 - AO356_10310 0.41 -0.4
2,326,157 - AO356_10310 0.41 +0.6
2,326,157 - AO356_10310 0.41 +0.7
2,326,301 + AO356_10310 0.62 -0.5
2,326,301 + AO356_10310 0.62 +0.3
2,326,410 + AO356_10310 0.79 +0.2
2,326,410 + AO356_10310 0.79 +0.3
2,326,410 + AO356_10310 0.79 -0.2
2,326,410 + AO356_10310 0.79 +0.2
2,326,410 + AO356_10310 0.79 +0.4
2,326,410 + AO356_10310 0.79 +0.1
2,326,410 + AO356_10310 0.79 +0.2
2,326,410 + AO356_10310 0.79 -0.2
2,326,410 + AO356_10310 0.79 -0.8
2,326,410 + AO356_10310 0.79 -0.5
2,326,410 + AO356_10310 0.79 +0.7
2,326,410 + AO356_10310 0.79 -0.3
2,326,411 - AO356_10310 0.79 -0.6
2,326,411 - AO356_10310 0.79 -0.3
2,326,411 - AO356_10310 0.79 +0.9
2,326,411 - AO356_10310 0.79 -0.0
2,326,411 - AO356_10310 0.79 -0.6
2,326,411 - AO356_10310 0.79 +0.7
2,326,411 - AO356_10310 0.79 -1.4
2,326,411 - AO356_10310 0.79 -0.6
2,326,411 - AO356_10310 0.79 +0.3
2,326,411 - AO356_10310 0.79 +0.2
2,326,411 - AO356_10310 0.79 -0.6
2,326,411 - AO356_10310 0.79 -1.1
2,326,411 - AO356_10310 0.79 -0.1
2,326,411 - AO356_10310 0.79 +0.6
2,326,411 - AO356_10310 0.79 +1.0
2,326,666 + -0.7
2,326,666 + +0.3
2,326,666 + -0.1
2,326,666 + +0.0
2,326,666 + -1.4
2,326,666 + -1.7
2,326,666 + +0.1
2,326,666 + +0.2
2,326,666 + +0.6
2,326,667 - +0.3
2,326,667 - -0.5
2,326,667 - +0.6
2,326,667 - -0.2
2,326,667 - -0.1
2,326,667 - -0.2
2,326,667 - -0.8
2,326,667 - -0.9
2,326,667 - +0.4
2,326,667 - +0.0
2,326,667 - +0.4
2,326,667 - -0.3
2,326,667 - -0.2
2,326,667 - +0.0
2,326,667 - +0.2
2,326,675 + -0.7
2,326,675 + -0.2
2,326,675 + +1.1
2,326,676 - -0.0
2,326,676 - -1.0
2,326,676 - +0.5
2,326,676 - +0.1
2,326,687 + -0.2
2,326,688 - +0.5
2,326,688 - -1.2
2,326,845 + +0.0
2,326,845 + +0.4
2,326,845 + +1.4
2,326,846 - -0.9
2,326,878 + AO356_10315 0.10 -0.0
2,326,879 - AO356_10315 0.10 +0.3
2,326,879 - AO356_10315 0.10 +0.9
2,326,879 - AO356_10315 0.10 -0.9
2,326,983 + AO356_10315 0.22 +0.1
2,327,049 + AO356_10315 0.29 -0.3
2,327,049 + AO356_10315 0.29 +1.0
2,327,049 + AO356_10315 0.29 -0.3
2,327,050 - AO356_10315 0.29 +0.4
2,327,050 - AO356_10315 0.29 +0.9
2,327,050 - AO356_10315 0.29 -0.2
2,327,063 + AO356_10315 0.30 -0.1
2,327,063 + AO356_10315 0.30 +0.8
2,327,063 + AO356_10315 0.30 +0.1
2,327,063 + AO356_10315 0.30 +0.2
2,327,064 - AO356_10315 0.30 -0.7
2,327,064 - AO356_10315 0.30 -1.4
2,327,064 - AO356_10315 0.30 -1.9
2,327,286 + AO356_10315 0.54 +1.2
2,327,286 + AO356_10315 0.54 +0.0
2,327,286 + AO356_10315 0.54 +0.6
2,327,286 + AO356_10315 0.54 +0.7
2,327,287 - AO356_10315 0.54 -0.5
2,327,287 - AO356_10315 0.54 -0.2
2,327,287 - AO356_10315 0.54 -0.2
2,327,287 - AO356_10315 0.54 +0.8
2,327,287 - AO356_10315 0.54 -0.3
2,327,287 - AO356_10315 0.54 +1.0
2,327,507 + AO356_10315 0.78 +0.2
2,327,507 + AO356_10315 0.78 +1.1
2,327,507 + AO356_10315 0.78 +0.9
2,327,507 + AO356_10315 0.78 -0.0
2,327,507 + AO356_10315 0.78 -0.1
2,327,508 - AO356_10315 0.78 +0.4
2,327,508 - AO356_10315 0.78 +0.3

Or see this region's nucleotide sequence