Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09660 and AO356_09665 are separated by 113 nucleotides AO356_09665 and AO356_09670 are separated by 3 nucleotides AO356_09670 and AO356_09675 are separated by 235 nucleotides
AO356_09660: AO356_09660 - chemotaxis protein, at 2,187,426 to 2,189,306
_09660
AO356_09665: AO356_09665 - hypothetical protein, at 2,189,420 to 2,190,016
_09665
AO356_09670: AO356_09670 - fructose 1,6-bisphosphatase, at 2,190,020 to 2,191,030
_09670
AO356_09675: AO356_09675 - hypothetical protein, at 2,191,266 to 2,192,648
_09675
Position (kb)
2190
2191
2192 Strain fitness (log2 ratio)
-1
0
1 at 2189.195 kb on + strand at 2189.195 kb on + strand at 2189.196 kb on - strand at 2189.196 kb on - strand at 2189.196 kb on - strand at 2189.291 kb on + strand at 2189.292 kb on - strand at 2189.304 kb on + strand at 2189.304 kb on + strand at 2189.304 kb on + strand at 2189.408 kb on - strand at 2189.544 kb on + strand, within AO356_09665 at 2189.545 kb on - strand, within AO356_09665 at 2189.665 kb on - strand, within AO356_09665 at 2189.665 kb on - strand, within AO356_09665 at 2189.665 kb on - strand, within AO356_09665 at 2189.665 kb on - strand, within AO356_09665 at 2189.665 kb on - strand, within AO356_09665 at 2189.665 kb on - strand, within AO356_09665 at 2189.805 kb on - strand, within AO356_09665 at 2189.807 kb on + strand, within AO356_09665 at 2189.807 kb on + strand, within AO356_09665 at 2189.808 kb on - strand, within AO356_09665 at 2189.808 kb on - strand, within AO356_09665 at 2189.808 kb on - strand, within AO356_09665 at 2189.808 kb on - strand, within AO356_09665 at 2189.808 kb on - strand, within AO356_09665 at 2189.951 kb on + strand, within AO356_09665 at 2189.952 kb on - strand, within AO356_09665 at 2190.021 kb on + strand at 2190.021 kb on + strand at 2190.021 kb on + strand at 2190.021 kb on + strand at 2190.022 kb on - strand at 2190.022 kb on - strand at 2190.022 kb on - strand at 2190.022 kb on - strand at 2191.048 kb on - strand at 2191.048 kb on - strand at 2191.091 kb on - strand at 2191.091 kb on - strand at 2191.091 kb on - strand at 2191.091 kb on - strand at 2191.101 kb on - strand at 2191.101 kb on - strand at 2191.101 kb on - strand at 2191.101 kb on - strand at 2191.152 kb on - strand at 2191.230 kb on + strand at 2191.230 kb on + strand at 2191.230 kb on + strand at 2191.230 kb on + strand at 2191.231 kb on - strand at 2191.231 kb on - strand at 2191.231 kb on - strand at 2191.477 kb on + strand, within AO356_09675 at 2191.477 kb on + strand, within AO356_09675 at 2191.478 kb on - strand, within AO356_09675 at 2191.730 kb on - strand, within AO356_09675 at 2191.870 kb on + strand, within AO356_09675 at 2191.870 kb on + strand, within AO356_09675 at 2191.870 kb on + strand, within AO356_09675 at 2191.870 kb on + strand, within AO356_09675 at 2191.871 kb on - strand, within AO356_09675 at 2191.871 kb on - strand, within AO356_09675 at 2191.871 kb on - strand, within AO356_09675 at 2191.871 kb on - strand, within AO356_09675 at 2191.871 kb on - strand, within AO356_09675 at 2191.871 kb on - strand, within AO356_09675 at 2191.871 kb on - strand, within AO356_09675 at 2191.871 kb on - strand, within AO356_09675 at 2191.871 kb on - strand, within AO356_09675 at 2192.011 kb on + strand, within AO356_09675 at 2192.011 kb on + strand, within AO356_09675 at 2192.011 kb on + strand, within AO356_09675 at 2192.011 kb on + strand, within AO356_09675
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 2,189,195 + +1.6 2,189,195 + -0.4 2,189,196 - +0.4 2,189,196 - +0.9 2,189,196 - +1.0 2,189,291 + -0.4 2,189,292 - -0.4 2,189,304 + -0.2 2,189,304 + +0.5 2,189,304 + +0.2 2,189,408 - +0.5 2,189,544 + AO356_09665 0.21 +0.6 2,189,545 - AO356_09665 0.21 +0.4 2,189,665 - AO356_09665 0.41 +1.4 2,189,665 - AO356_09665 0.41 -0.3 2,189,665 - AO356_09665 0.41 -0.2 2,189,665 - AO356_09665 0.41 -1.5 2,189,665 - AO356_09665 0.41 +0.5 2,189,665 - AO356_09665 0.41 +0.5 2,189,805 - AO356_09665 0.64 +0.2 2,189,807 + AO356_09665 0.65 +0.5 2,189,807 + AO356_09665 0.65 +1.1 2,189,808 - AO356_09665 0.65 -0.1 2,189,808 - AO356_09665 0.65 +1.4 2,189,808 - AO356_09665 0.65 +0.3 2,189,808 - AO356_09665 0.65 +0.6 2,189,808 - AO356_09665 0.65 +0.2 2,189,951 + AO356_09665 0.89 +0.2 2,189,952 - AO356_09665 0.89 -0.2 2,190,021 + -0.6 2,190,021 + -0.2 2,190,021 + +0.6 2,190,021 + -0.0 2,190,022 - +0.3 2,190,022 - +0.5 2,190,022 - +1.2 2,190,022 - +0.1 2,191,048 - -0.7 2,191,048 - -0.6 2,191,091 - -1.1 2,191,091 - -0.0 2,191,091 - -0.3 2,191,091 - +0.4 2,191,101 - +0.1 2,191,101 - +0.4 2,191,101 - -1.1 2,191,101 - +0.3 2,191,152 - -0.1 2,191,230 + -0.3 2,191,230 + -0.4 2,191,230 + -0.4 2,191,230 + -0.7 2,191,231 - +0.2 2,191,231 - +0.1 2,191,231 - -0.8 2,191,477 + AO356_09675 0.15 +1.6 2,191,477 + AO356_09675 0.15 -1.1 2,191,478 - AO356_09675 0.15 +0.5 2,191,730 - AO356_09675 0.34 -0.2 2,191,870 + AO356_09675 0.44 -1.4 2,191,870 + AO356_09675 0.44 -0.2 2,191,870 + AO356_09675 0.44 -0.3 2,191,870 + AO356_09675 0.44 -1.7 2,191,871 - AO356_09675 0.44 -0.8 2,191,871 - AO356_09675 0.44 +0.3 2,191,871 - AO356_09675 0.44 +0.7 2,191,871 - AO356_09675 0.44 -0.7 2,191,871 - AO356_09675 0.44 -0.4 2,191,871 - AO356_09675 0.44 -0.1 2,191,871 - AO356_09675 0.44 +0.1 2,191,871 - AO356_09675 0.44 -0.7 2,191,871 - AO356_09675 0.44 -0.1 2,192,011 + AO356_09675 0.54 -0.1 2,192,011 + AO356_09675 0.54 -0.1 2,192,011 + AO356_09675 0.54 +0.6 2,192,011 + AO356_09675 0.54 +0.4
Or see this region's nucleotide sequence