Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09670

Experiment: L-Proline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_09660 and AO356_09665 are separated by 113 nucleotidesAO356_09665 and AO356_09670 are separated by 3 nucleotidesAO356_09670 and AO356_09675 are separated by 235 nucleotides AO356_09660: AO356_09660 - chemotaxis protein, at 2,187,426 to 2,189,306 _09660 AO356_09665: AO356_09665 - hypothetical protein, at 2,189,420 to 2,190,016 _09665 AO356_09670: AO356_09670 - fructose 1,6-bisphosphatase, at 2,190,020 to 2,191,030 _09670 AO356_09675: AO356_09675 - hypothetical protein, at 2,191,266 to 2,192,648 _09675 Position (kb) 2190 2191 2192Strain fitness (log2 ratio) -1 0 1at 2189.195 kb on + strandat 2189.195 kb on + strandat 2189.196 kb on - strandat 2189.196 kb on - strandat 2189.196 kb on - strandat 2189.291 kb on + strandat 2189.292 kb on - strandat 2189.304 kb on + strandat 2189.304 kb on + strandat 2189.304 kb on + strandat 2189.408 kb on - strandat 2189.544 kb on + strand, within AO356_09665at 2189.545 kb on - strand, within AO356_09665at 2189.665 kb on - strand, within AO356_09665at 2189.665 kb on - strand, within AO356_09665at 2189.665 kb on - strand, within AO356_09665at 2189.665 kb on - strand, within AO356_09665at 2189.665 kb on - strand, within AO356_09665at 2189.665 kb on - strand, within AO356_09665at 2189.805 kb on - strand, within AO356_09665at 2189.807 kb on + strand, within AO356_09665at 2189.807 kb on + strand, within AO356_09665at 2189.808 kb on - strand, within AO356_09665at 2189.808 kb on - strand, within AO356_09665at 2189.808 kb on - strand, within AO356_09665at 2189.808 kb on - strand, within AO356_09665at 2189.808 kb on - strand, within AO356_09665at 2189.951 kb on + strand, within AO356_09665at 2189.952 kb on - strand, within AO356_09665at 2190.021 kb on + strandat 2190.021 kb on + strandat 2190.021 kb on + strandat 2190.021 kb on + strandat 2190.022 kb on - strandat 2190.022 kb on - strandat 2190.022 kb on - strandat 2190.022 kb on - strandat 2191.048 kb on - strandat 2191.048 kb on - strandat 2191.091 kb on - strandat 2191.091 kb on - strandat 2191.091 kb on - strandat 2191.091 kb on - strandat 2191.101 kb on - strandat 2191.101 kb on - strandat 2191.101 kb on - strandat 2191.101 kb on - strandat 2191.152 kb on - strandat 2191.230 kb on + strandat 2191.230 kb on + strandat 2191.230 kb on + strandat 2191.230 kb on + strandat 2191.231 kb on - strandat 2191.231 kb on - strandat 2191.231 kb on - strandat 2191.477 kb on + strand, within AO356_09675at 2191.477 kb on + strand, within AO356_09675at 2191.478 kb on - strand, within AO356_09675at 2191.730 kb on - strand, within AO356_09675at 2191.870 kb on + strand, within AO356_09675at 2191.870 kb on + strand, within AO356_09675at 2191.870 kb on + strand, within AO356_09675at 2191.870 kb on + strand, within AO356_09675at 2191.871 kb on - strand, within AO356_09675at 2191.871 kb on - strand, within AO356_09675at 2191.871 kb on - strand, within AO356_09675at 2191.871 kb on - strand, within AO356_09675at 2191.871 kb on - strand, within AO356_09675at 2191.871 kb on - strand, within AO356_09675at 2191.871 kb on - strand, within AO356_09675at 2191.871 kb on - strand, within AO356_09675at 2191.871 kb on - strand, within AO356_09675at 2192.011 kb on + strand, within AO356_09675at 2192.011 kb on + strand, within AO356_09675at 2192.011 kb on + strand, within AO356_09675at 2192.011 kb on + strand, within AO356_09675

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
remove
2,189,195 + +1.6
2,189,195 + -0.4
2,189,196 - +0.4
2,189,196 - +0.9
2,189,196 - +1.0
2,189,291 + -0.4
2,189,292 - -0.4
2,189,304 + -0.2
2,189,304 + +0.5
2,189,304 + +0.2
2,189,408 - +0.5
2,189,544 + AO356_09665 0.21 +0.6
2,189,545 - AO356_09665 0.21 +0.4
2,189,665 - AO356_09665 0.41 +1.4
2,189,665 - AO356_09665 0.41 -0.3
2,189,665 - AO356_09665 0.41 -0.2
2,189,665 - AO356_09665 0.41 -1.5
2,189,665 - AO356_09665 0.41 +0.5
2,189,665 - AO356_09665 0.41 +0.5
2,189,805 - AO356_09665 0.64 +0.2
2,189,807 + AO356_09665 0.65 +0.5
2,189,807 + AO356_09665 0.65 +1.1
2,189,808 - AO356_09665 0.65 -0.1
2,189,808 - AO356_09665 0.65 +1.4
2,189,808 - AO356_09665 0.65 +0.3
2,189,808 - AO356_09665 0.65 +0.6
2,189,808 - AO356_09665 0.65 +0.2
2,189,951 + AO356_09665 0.89 +0.2
2,189,952 - AO356_09665 0.89 -0.2
2,190,021 + -0.6
2,190,021 + -0.2
2,190,021 + +0.6
2,190,021 + -0.0
2,190,022 - +0.3
2,190,022 - +0.5
2,190,022 - +1.2
2,190,022 - +0.1
2,191,048 - -0.7
2,191,048 - -0.6
2,191,091 - -1.1
2,191,091 - -0.0
2,191,091 - -0.3
2,191,091 - +0.4
2,191,101 - +0.1
2,191,101 - +0.4
2,191,101 - -1.1
2,191,101 - +0.3
2,191,152 - -0.1
2,191,230 + -0.3
2,191,230 + -0.4
2,191,230 + -0.4
2,191,230 + -0.7
2,191,231 - +0.2
2,191,231 - +0.1
2,191,231 - -0.8
2,191,477 + AO356_09675 0.15 +1.6
2,191,477 + AO356_09675 0.15 -1.1
2,191,478 - AO356_09675 0.15 +0.5
2,191,730 - AO356_09675 0.34 -0.2
2,191,870 + AO356_09675 0.44 -1.4
2,191,870 + AO356_09675 0.44 -0.2
2,191,870 + AO356_09675 0.44 -0.3
2,191,870 + AO356_09675 0.44 -1.7
2,191,871 - AO356_09675 0.44 -0.8
2,191,871 - AO356_09675 0.44 +0.3
2,191,871 - AO356_09675 0.44 +0.7
2,191,871 - AO356_09675 0.44 -0.7
2,191,871 - AO356_09675 0.44 -0.4
2,191,871 - AO356_09675 0.44 -0.1
2,191,871 - AO356_09675 0.44 +0.1
2,191,871 - AO356_09675 0.44 -0.7
2,191,871 - AO356_09675 0.44 -0.1
2,192,011 + AO356_09675 0.54 -0.1
2,192,011 + AO356_09675 0.54 -0.1
2,192,011 + AO356_09675 0.54 +0.6
2,192,011 + AO356_09675 0.54 +0.4

Or see this region's nucleotide sequence