Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08995

Experiment: L-Proline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_08985 and AO356_08990 are separated by 1 nucleotidesAO356_08990 and AO356_08995 are separated by 81 nucleotidesAO356_08995 and AO356_09000 overlap by 4 nucleotides AO356_08985: AO356_08985 - hypothetical protein, at 2,032,178 to 2,032,378 _08985 AO356_08990: AO356_08990 - lactate dehydrogenase, at 2,032,380 to 2,033,219 _08990 AO356_08995: AO356_08995 - hypothetical protein, at 2,033,301 to 2,034,032 _08995 AO356_09000: AO356_09000 - type IV secretion protein Rhs, at 2,034,029 to 2,036,086 _09000 Position (kb) 2033 2034 2035Strain fitness (log2 ratio) -1 0 1at 2032.600 kb on + strand, within AO356_08990at 2032.936 kb on + strand, within AO356_08990at 2032.937 kb on - strand, within AO356_08990at 2032.937 kb on - strand, within AO356_08990at 2032.981 kb on + strand, within AO356_08990at 2032.982 kb on - strand, within AO356_08990at 2033.041 kb on + strand, within AO356_08990at 2033.041 kb on + strand, within AO356_08990at 2033.041 kb on + strand, within AO356_08990at 2033.041 kb on + strand, within AO356_08990at 2033.042 kb on - strand, within AO356_08990at 2033.080 kb on + strand, within AO356_08990at 2033.080 kb on + strand, within AO356_08990at 2033.080 kb on + strand, within AO356_08990at 2033.081 kb on - strand, within AO356_08990at 2033.081 kb on - strand, within AO356_08990at 2033.110 kb on + strand, within AO356_08990at 2033.213 kb on - strandat 2033.247 kb on + strandat 2033.248 kb on - strandat 2033.248 kb on - strandat 2033.323 kb on + strandat 2033.323 kb on + strandat 2033.324 kb on - strandat 2033.324 kb on - strandat 2033.324 kb on - strandat 2033.324 kb on - strandat 2033.324 kb on - strandat 2033.419 kb on + strand, within AO356_08995at 2033.562 kb on + strand, within AO356_08995at 2033.563 kb on - strand, within AO356_08995at 2033.838 kb on + strand, within AO356_08995at 2033.838 kb on + strand, within AO356_08995at 2033.838 kb on + strand, within AO356_08995at 2033.838 kb on + strand, within AO356_08995at 2033.838 kb on + strand, within AO356_08995at 2033.838 kb on + strand, within AO356_08995at 2033.839 kb on - strand, within AO356_08995at 2033.839 kb on - strand, within AO356_08995at 2033.842 kb on + strand, within AO356_08995at 2033.842 kb on + strand, within AO356_08995at 2033.842 kb on + strand, within AO356_08995at 2033.842 kb on + strand, within AO356_08995at 2033.842 kb on + strand, within AO356_08995at 2033.842 kb on + strand, within AO356_08995at 2033.842 kb on + strand, within AO356_08995at 2033.843 kb on - strand, within AO356_08995at 2033.843 kb on - strand, within AO356_08995at 2034.600 kb on + strand, within AO356_09000at 2034.646 kb on - strand, within AO356_09000at 2034.646 kb on - strand, within AO356_09000at 2034.683 kb on - strand, within AO356_09000at 2034.683 kb on - strand, within AO356_09000at 2034.828 kb on + strand, within AO356_09000at 2034.828 kb on + strand, within AO356_09000at 2034.828 kb on + strand, within AO356_09000at 2034.828 kb on + strand, within AO356_09000at 2034.828 kb on + strand, within AO356_09000at 2034.828 kb on + strand, within AO356_09000at 2034.829 kb on - strand, within AO356_09000at 2034.829 kb on - strand, within AO356_09000

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
remove
2,032,600 + AO356_08990 0.26 +1.5
2,032,936 + AO356_08990 0.66 +0.6
2,032,937 - AO356_08990 0.66 +0.1
2,032,937 - AO356_08990 0.66 +0.9
2,032,981 + AO356_08990 0.72 +0.7
2,032,982 - AO356_08990 0.72 +0.1
2,033,041 + AO356_08990 0.79 +0.7
2,033,041 + AO356_08990 0.79 +0.1
2,033,041 + AO356_08990 0.79 +0.2
2,033,041 + AO356_08990 0.79 -1.1
2,033,042 - AO356_08990 0.79 -0.4
2,033,080 + AO356_08990 0.83 -0.5
2,033,080 + AO356_08990 0.83 +0.4
2,033,080 + AO356_08990 0.83 +0.5
2,033,081 - AO356_08990 0.83 -0.7
2,033,081 - AO356_08990 0.83 +0.1
2,033,110 + AO356_08990 0.87 +0.5
2,033,213 - +0.5
2,033,247 + -1.4
2,033,248 - +0.7
2,033,248 - -0.9
2,033,323 + +1.3
2,033,323 + -0.7
2,033,324 - +0.5
2,033,324 - +0.2
2,033,324 - -0.1
2,033,324 - +0.5
2,033,324 - +0.2
2,033,419 + AO356_08995 0.16 +0.9
2,033,562 + AO356_08995 0.36 -0.2
2,033,563 - AO356_08995 0.36 -0.1
2,033,838 + AO356_08995 0.73 -0.1
2,033,838 + AO356_08995 0.73 +1.1
2,033,838 + AO356_08995 0.73 -0.6
2,033,838 + AO356_08995 0.73 -1.1
2,033,838 + AO356_08995 0.73 -1.1
2,033,838 + AO356_08995 0.73 -0.4
2,033,839 - AO356_08995 0.73 +0.4
2,033,839 - AO356_08995 0.73 +0.5
2,033,842 + AO356_08995 0.74 +0.3
2,033,842 + AO356_08995 0.74 -0.5
2,033,842 + AO356_08995 0.74 +0.7
2,033,842 + AO356_08995 0.74 -0.4
2,033,842 + AO356_08995 0.74 -0.4
2,033,842 + AO356_08995 0.74 -0.3
2,033,842 + AO356_08995 0.74 -1.0
2,033,843 - AO356_08995 0.74 +0.0
2,033,843 - AO356_08995 0.74 +0.6
2,034,600 + AO356_09000 0.28 +0.1
2,034,646 - AO356_09000 0.30 -0.1
2,034,646 - AO356_09000 0.30 -0.3
2,034,683 - AO356_09000 0.32 -0.1
2,034,683 - AO356_09000 0.32 +0.9
2,034,828 + AO356_09000 0.39 -0.1
2,034,828 + AO356_09000 0.39 +0.6
2,034,828 + AO356_09000 0.39 +0.9
2,034,828 + AO356_09000 0.39 +1.1
2,034,828 + AO356_09000 0.39 +0.3
2,034,828 + AO356_09000 0.39 +0.7
2,034,829 - AO356_09000 0.39 -0.7
2,034,829 - AO356_09000 0.39 -0.4

Or see this region's nucleotide sequence