Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08965

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08960 and AO356_08965 are separated by 11 nucleotidesAO356_08965 and AO356_08970 are separated by 376 nucleotides AO356_08960: AO356_08960 - pyruvate dehydrogenase, at 2,022,501 to 2,025,146 _08960 AO356_08965: AO356_08965 - dihydrolipoamide acetyltransferase, at 2,025,158 to 2,026,798 _08965 AO356_08970: AO356_08970 - phosphodiesterase, at 2,027,175 to 2,028,566 _08970 Position (kb) 2025 2026 2027Strain fitness (log2 ratio) -2 -1 0 1at 2027.007 kb on + strandat 2027.008 kb on - strandat 2027.028 kb on + strandat 2027.028 kb on + strandat 2027.029 kb on - strandat 2027.029 kb on - strandat 2027.036 kb on + strandat 2027.036 kb on + strandat 2027.036 kb on + strandat 2027.036 kb on + strandat 2027.037 kb on - strandat 2027.037 kb on - strandat 2027.037 kb on - strandat 2027.086 kb on + strandat 2027.090 kb on + strandat 2027.090 kb on + strandat 2027.090 kb on + strandat 2027.090 kb on + strandat 2027.091 kb on - strandat 2027.091 kb on - strandat 2027.091 kb on - strandat 2027.091 kb on - strandat 2027.107 kb on + strandat 2027.107 kb on + strandat 2027.107 kb on + strandat 2027.108 kb on - strandat 2027.108 kb on - strandat 2027.108 kb on - strandat 2027.108 kb on - strandat 2027.152 kb on + strandat 2027.153 kb on - strandat 2027.174 kb on + strandat 2027.174 kb on + strandat 2027.174 kb on + strandat 2027.175 kb on - strandat 2027.175 kb on - strandat 2027.175 kb on - strandat 2027.175 kb on - strandat 2027.187 kb on - strandat 2027.187 kb on - strandat 2027.267 kb on - strandat 2027.400 kb on + strand, within AO356_08970at 2027.401 kb on - strand, within AO356_08970at 2027.487 kb on + strand, within AO356_08970at 2027.487 kb on + strand, within AO356_08970at 2027.487 kb on + strand, within AO356_08970at 2027.487 kb on + strand, within AO356_08970at 2027.487 kb on + strand, within AO356_08970at 2027.487 kb on + strand, within AO356_08970at 2027.487 kb on + strand, within AO356_08970at 2027.487 kb on + strand, within AO356_08970at 2027.487 kb on + strand, within AO356_08970at 2027.487 kb on + strand, within AO356_08970at 2027.488 kb on - strand, within AO356_08970at 2027.488 kb on - strand, within AO356_08970at 2027.488 kb on - strand, within AO356_08970at 2027.488 kb on - strand, within AO356_08970at 2027.488 kb on - strand, within AO356_08970at 2027.520 kb on - strand, within AO356_08970at 2027.532 kb on + strand, within AO356_08970at 2027.532 kb on + strand, within AO356_08970at 2027.532 kb on + strand, within AO356_08970at 2027.532 kb on + strand, within AO356_08970at 2027.532 kb on + strand, within AO356_08970at 2027.532 kb on + strand, within AO356_08970at 2027.532 kb on + strand, within AO356_08970at 2027.532 kb on + strand, within AO356_08970at 2027.532 kb on + strand, within AO356_08970at 2027.533 kb on - strand, within AO356_08970at 2027.533 kb on - strand, within AO356_08970at 2027.533 kb on - strand, within AO356_08970at 2027.533 kb on - strand, within AO356_08970at 2027.533 kb on - strand, within AO356_08970at 2027.534 kb on + strand, within AO356_08970at 2027.534 kb on + strand, within AO356_08970at 2027.534 kb on + strand, within AO356_08970at 2027.534 kb on + strand, within AO356_08970at 2027.535 kb on - strand, within AO356_08970at 2027.535 kb on - strand, within AO356_08970at 2027.535 kb on - strand, within AO356_08970at 2027.535 kb on - strand, within AO356_08970at 2027.535 kb on - strand, within AO356_08970at 2027.553 kb on + strand, within AO356_08970at 2027.553 kb on + strand, within AO356_08970at 2027.554 kb on - strand, within AO356_08970at 2027.581 kb on + strand, within AO356_08970at 2027.581 kb on + strand, within AO356_08970at 2027.683 kb on - strand, within AO356_08970at 2027.683 kb on - strand, within AO356_08970at 2027.683 kb on - strand, within AO356_08970at 2027.683 kb on - strand, within AO356_08970at 2027.699 kb on + strand, within AO356_08970at 2027.700 kb on - strand, within AO356_08970at 2027.700 kb on - strand, within AO356_08970at 2027.721 kb on + strand, within AO356_08970at 2027.721 kb on + strand, within AO356_08970at 2027.722 kb on - strand, within AO356_08970at 2027.722 kb on - strand, within AO356_08970at 2027.723 kb on + strand, within AO356_08970at 2027.723 kb on + strand, within AO356_08970at 2027.724 kb on - strand, within AO356_08970

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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2,027,007 + -0.3
2,027,008 - +0.1
2,027,028 + -0.3
2,027,028 + +0.8
2,027,029 - +0.4
2,027,029 - -0.1
2,027,036 + +0.8
2,027,036 + -0.2
2,027,036 + +0.5
2,027,036 + +0.4
2,027,037 - -1.0
2,027,037 - +0.3
2,027,037 - +0.4
2,027,086 + -0.0
2,027,090 + +0.1
2,027,090 + +0.3
2,027,090 + +0.1
2,027,090 + -0.2
2,027,091 - +1.0
2,027,091 - +0.8
2,027,091 - -0.4
2,027,091 - -0.2
2,027,107 + +0.4
2,027,107 + -0.5
2,027,107 + -0.5
2,027,108 - +0.3
2,027,108 - -1.8
2,027,108 - +0.7
2,027,108 - -0.0
2,027,152 + +0.5
2,027,153 - +0.7
2,027,174 + +0.1
2,027,174 + -0.0
2,027,174 + +0.2
2,027,175 - +0.3
2,027,175 - +0.7
2,027,175 - +0.6
2,027,175 - +0.5
2,027,187 - -0.4
2,027,187 - +0.4
2,027,267 - -0.5
2,027,400 + AO356_08970 0.16 -0.2
2,027,401 - AO356_08970 0.16 +0.7
2,027,487 + AO356_08970 0.22 +0.4
2,027,487 + AO356_08970 0.22 +0.2
2,027,487 + AO356_08970 0.22 -0.0
2,027,487 + AO356_08970 0.22 +0.4
2,027,487 + AO356_08970 0.22 -1.2
2,027,487 + AO356_08970 0.22 +0.5
2,027,487 + AO356_08970 0.22 +0.0
2,027,487 + AO356_08970 0.22 +0.1
2,027,487 + AO356_08970 0.22 +0.1
2,027,487 + AO356_08970 0.22 +0.1
2,027,488 - AO356_08970 0.22 +1.4
2,027,488 - AO356_08970 0.22 +0.7
2,027,488 - AO356_08970 0.22 -0.2
2,027,488 - AO356_08970 0.22 -0.0
2,027,488 - AO356_08970 0.22 +1.1
2,027,520 - AO356_08970 0.25 +0.5
2,027,532 + AO356_08970 0.26 -0.3
2,027,532 + AO356_08970 0.26 +0.7
2,027,532 + AO356_08970 0.26 +0.5
2,027,532 + AO356_08970 0.26 +0.2
2,027,532 + AO356_08970 0.26 +1.0
2,027,532 + AO356_08970 0.26 +0.5
2,027,532 + AO356_08970 0.26 +0.6
2,027,532 + AO356_08970 0.26 +1.0
2,027,532 + AO356_08970 0.26 +0.3
2,027,533 - AO356_08970 0.26 -0.0
2,027,533 - AO356_08970 0.26 -1.1
2,027,533 - AO356_08970 0.26 +0.3
2,027,533 - AO356_08970 0.26 +0.1
2,027,533 - AO356_08970 0.26 +0.9
2,027,534 + AO356_08970 0.26 -0.1
2,027,534 + AO356_08970 0.26 +0.9
2,027,534 + AO356_08970 0.26 +0.2
2,027,534 + AO356_08970 0.26 -1.2
2,027,535 - AO356_08970 0.26 +0.5
2,027,535 - AO356_08970 0.26 +1.1
2,027,535 - AO356_08970 0.26 -0.2
2,027,535 - AO356_08970 0.26 -0.0
2,027,535 - AO356_08970 0.26 +0.9
2,027,553 + AO356_08970 0.27 +1.5
2,027,553 + AO356_08970 0.27 +1.0
2,027,554 - AO356_08970 0.27 +0.8
2,027,581 + AO356_08970 0.29 -0.7
2,027,581 + AO356_08970 0.29 +1.1
2,027,683 - AO356_08970 0.36 +0.2
2,027,683 - AO356_08970 0.36 -0.5
2,027,683 - AO356_08970 0.36 +0.2
2,027,683 - AO356_08970 0.36 +0.9
2,027,699 + AO356_08970 0.38 +0.5
2,027,700 - AO356_08970 0.38 +0.2
2,027,700 - AO356_08970 0.38 +0.4
2,027,721 + AO356_08970 0.39 +0.3
2,027,721 + AO356_08970 0.39 +0.7
2,027,722 - AO356_08970 0.39 -0.4
2,027,722 - AO356_08970 0.39 +0.9
2,027,723 + AO356_08970 0.39 -0.0
2,027,723 + AO356_08970 0.39 +1.1
2,027,724 - AO356_08970 0.39 -0.4

Or see this region's nucleotide sequence