Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03500

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03490 and AO356_03495 are separated by 4 nucleotidesAO356_03495 and AO356_03500 are separated by 183 nucleotidesAO356_03500 and AO356_03505 are separated by 348 nucleotides AO356_03490: AO356_03490 - 3-demethylubiquinone-9 3-methyltransferase, at 779,272 to 779,970 _03490 AO356_03495: AO356_03495 - phosphoglycolate phosphatase, at 779,975 to 780,646 _03495 AO356_03500: AO356_03500 - 3-oxoacyl-ACP reductase, at 780,830 to 781,570 _03500 AO356_03505: AO356_03505 - hypothetical protein, at 781,919 to 782,845 _03505 Position (kb) 780 781 782Strain fitness (log2 ratio) -2 -1 0 1 2at 779.968 kb on + strandat 779.968 kb on + strandat 779.968 kb on + strandat 779.968 kb on + strandat 779.968 kb on + strandat 780.207 kb on - strand, within AO356_03495at 780.536 kb on + strand, within AO356_03495at 780.537 kb on - strand, within AO356_03495at 780.537 kb on - strand, within AO356_03495at 780.542 kb on + strand, within AO356_03495at 780.543 kb on - strand, within AO356_03495at 780.812 kb on + strandat 780.813 kb on - strandat 780.813 kb on - strandat 780.830 kb on - strandat 780.839 kb on + strandat 780.839 kb on + strandat 780.948 kb on + strand, within AO356_03500at 780.989 kb on + strand, within AO356_03500at 780.989 kb on + strand, within AO356_03500at 781.067 kb on + strand, within AO356_03500at 781.067 kb on + strand, within AO356_03500at 781.068 kb on - strand, within AO356_03500at 781.068 kb on - strand, within AO356_03500at 781.150 kb on + strand, within AO356_03500at 781.150 kb on + strand, within AO356_03500at 781.313 kb on + strand, within AO356_03500at 781.313 kb on + strand, within AO356_03500at 781.508 kb on + strandat 781.508 kb on + strandat 781.508 kb on + strandat 781.515 kb on - strandat 781.568 kb on + strandat 781.568 kb on + strandat 781.569 kb on - strandat 781.569 kb on - strandat 781.569 kb on - strandat 781.569 kb on - strandat 781.593 kb on + strandat 781.736 kb on + strandat 781.767 kb on + strandat 781.768 kb on - strandat 781.768 kb on - strandat 781.789 kb on + strandat 781.789 kb on + strandat 781.789 kb on + strandat 781.789 kb on + strandat 781.789 kb on + strandat 781.789 kb on + strandat 781.790 kb on - strandat 781.790 kb on - strandat 781.790 kb on - strandat 781.790 kb on - strandat 781.790 kb on - strandat 781.790 kb on - strandat 781.790 kb on - strandat 781.832 kb on - strandat 781.832 kb on - strandat 781.851 kb on - strandat 781.851 kb on - strandat 781.898 kb on + strandat 781.898 kb on + strandat 781.898 kb on + strandat 781.898 kb on + strandat 781.898 kb on + strandat 781.898 kb on + strandat 781.898 kb on + strandat 781.898 kb on + strandat 781.898 kb on + strandat 781.899 kb on - strandat 781.899 kb on - strandat 781.899 kb on - strandat 781.918 kb on + strandat 782.055 kb on + strand, within AO356_03505at 782.055 kb on + strand, within AO356_03505at 782.056 kb on - strand, within AO356_03505at 782.138 kb on + strand, within AO356_03505at 782.138 kb on + strand, within AO356_03505at 782.138 kb on + strand, within AO356_03505at 782.139 kb on - strand, within AO356_03505at 782.201 kb on + strand, within AO356_03505at 782.201 kb on + strand, within AO356_03505at 782.201 kb on + strand, within AO356_03505at 782.201 kb on + strand, within AO356_03505at 782.201 kb on + strand, within AO356_03505at 782.202 kb on - strand, within AO356_03505at 782.202 kb on - strand, within AO356_03505at 782.202 kb on - strand, within AO356_03505at 782.202 kb on - strand, within AO356_03505at 782.241 kb on + strand, within AO356_03505at 782.242 kb on - strand, within AO356_03505

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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779,968 + -0.7
779,968 + -1.8
779,968 + -0.4
779,968 + -0.1
779,968 + +0.2
780,207 - AO356_03495 0.35 -2.2
780,536 + AO356_03495 0.83 -0.7
780,537 - AO356_03495 0.84 -0.5
780,537 - AO356_03495 0.84 -1.9
780,542 + AO356_03495 0.84 +0.3
780,543 - AO356_03495 0.85 -1.6
780,812 + -0.5
780,813 - -0.7
780,813 - -0.2
780,830 - -1.1
780,839 + -0.7
780,839 + -1.1
780,948 + AO356_03500 0.16 -1.0
780,989 + AO356_03500 0.21 -1.2
780,989 + AO356_03500 0.21 -1.0
781,067 + AO356_03500 0.32 +0.2
781,067 + AO356_03500 0.32 -1.2
781,068 - AO356_03500 0.32 -2.1
781,068 - AO356_03500 0.32 -0.5
781,150 + AO356_03500 0.43 +0.3
781,150 + AO356_03500 0.43 +0.4
781,313 + AO356_03500 0.65 -1.0
781,313 + AO356_03500 0.65 +0.3
781,508 + -0.4
781,508 + -1.8
781,508 + -0.4
781,515 - -1.4
781,568 + +0.2
781,568 + +0.5
781,569 - +0.8
781,569 - +0.2
781,569 - -0.1
781,569 - +0.9
781,593 + -0.9
781,736 + -1.1
781,767 + -1.1
781,768 - +0.1
781,768 - +0.3
781,789 + -0.1
781,789 + -0.4
781,789 + -1.1
781,789 + +0.5
781,789 + +0.2
781,789 + +1.5
781,790 - +0.1
781,790 - +0.6
781,790 - -0.8
781,790 - -1.3
781,790 - +0.2
781,790 - -0.9
781,790 - +0.5
781,832 - +0.1
781,832 - +0.9
781,851 - +0.5
781,851 - +0.3
781,898 + -1.4
781,898 + +0.6
781,898 + -0.9
781,898 + -0.8
781,898 + -0.1
781,898 + -0.3
781,898 + -0.4
781,898 + +0.8
781,898 + +1.0
781,899 - -0.1
781,899 - +0.6
781,899 - +0.6
781,918 + -0.5
782,055 + AO356_03505 0.15 -0.4
782,055 + AO356_03505 0.15 +1.0
782,056 - AO356_03505 0.15 +0.3
782,138 + AO356_03505 0.24 +0.1
782,138 + AO356_03505 0.24 +0.5
782,138 + AO356_03505 0.24 +1.4
782,139 - AO356_03505 0.24 +0.8
782,201 + AO356_03505 0.30 -0.6
782,201 + AO356_03505 0.30 +0.9
782,201 + AO356_03505 0.30 -0.3
782,201 + AO356_03505 0.30 +0.2
782,201 + AO356_03505 0.30 +2.1
782,202 - AO356_03505 0.31 -0.0
782,202 - AO356_03505 0.31 +1.3
782,202 - AO356_03505 0.31 +0.3
782,202 - AO356_03505 0.31 +1.0
782,241 + AO356_03505 0.35 +0.0
782,242 - AO356_03505 0.35 -0.3

Or see this region's nucleotide sequence