Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02305 and AO356_02310 are separated by 106 nucleotides AO356_02310 and AO356_02315 are separated by 236 nucleotides AO356_02315 and AO356_02320 are separated by 115 nucleotides AO356_02320 and AO356_02325 are separated by 108 nucleotides
AO356_02305: AO356_02305 - hypothetical protein, at 498,139 to 498,372
_02305
AO356_02310: AO356_02310 - PasA protein, at 498,479 to 499,003
_02310
AO356_02315: AO356_02315 - DNA topoisomerase I, at 499,240 to 501,852
_02315
AO356_02320: AO356_02320 - TonB box-like protein, at 501,968 to 502,204
_02320
AO356_02325: AO356_02325 - 3-ketoacyl-CoA thiolase, at 502,313 to 503,488
_02325
Position (kb) 499
500
501
502 Strain fitness (log2 ratio) -2
-1
0
1
2 at 498.259 kb on + strand, within AO356_02305 at 498.259 kb on + strand, within AO356_02305 at 498.259 kb on + strand, within AO356_02305 at 498.260 kb on - strand, within AO356_02305 at 498.366 kb on + strand at 498.366 kb on + strand at 498.366 kb on + strand at 498.366 kb on + strand at 498.372 kb on + strand at 498.372 kb on + strand at 498.372 kb on + strand at 498.373 kb on - strand at 498.373 kb on - strand at 498.373 kb on - strand at 498.373 kb on - strand at 498.373 kb on - strand at 498.373 kb on - strand at 498.373 kb on - strand at 498.403 kb on + strand at 498.403 kb on + strand at 498.403 kb on + strand at 498.403 kb on + strand at 498.404 kb on - strand at 498.404 kb on - strand at 498.404 kb on - strand at 498.404 kb on - strand at 498.405 kb on + strand at 498.405 kb on + strand at 498.405 kb on + strand at 498.405 kb on + strand at 498.405 kb on + strand at 498.405 kb on + strand at 498.405 kb on + strand at 498.405 kb on + strand at 498.405 kb on + strand at 498.406 kb on - strand at 498.406 kb on - strand at 498.406 kb on - strand at 498.406 kb on - strand at 498.406 kb on - strand at 498.406 kb on - strand at 498.406 kb on - strand at 498.406 kb on - strand at 498.406 kb on - strand at 498.406 kb on - strand at 498.406 kb on - strand at 498.406 kb on - strand at 498.406 kb on - strand at 498.407 kb on + strand at 498.407 kb on + strand at 498.407 kb on + strand at 498.407 kb on + strand at 498.408 kb on - strand at 498.408 kb on - strand at 498.408 kb on - strand at 498.408 kb on - strand at 498.408 kb on - strand at 498.460 kb on + strand at 498.461 kb on - strand at 498.680 kb on + strand, within AO356_02310 at 498.680 kb on + strand, within AO356_02310 at 498.681 kb on - strand, within AO356_02310 at 498.855 kb on + strand, within AO356_02310 at 498.856 kb on - strand, within AO356_02310 at 498.963 kb on + strand at 498.987 kb on + strand at 498.987 kb on + strand at 498.987 kb on + strand at 498.988 kb on - strand at 499.107 kb on + strand at 499.107 kb on + strand at 499.107 kb on + strand at 499.108 kb on - strand at 499.149 kb on + strand at 499.150 kb on - strand at 499.158 kb on + strand at 499.158 kb on + strand at 499.159 kb on - strand at 499.159 kb on - strand at 499.159 kb on - strand at 499.159 kb on - strand at 499.281 kb on - strand at 499.281 kb on - strand at 499.281 kb on - strand at 499.325 kb on + strand at 499.410 kb on - strand at 499.532 kb on + strand, within AO356_02315 at 499.532 kb on + strand, within AO356_02315 at 499.532 kb on + strand, within AO356_02315 at 499.533 kb on - strand, within AO356_02315 at 499.533 kb on - strand, within AO356_02315 at 499.533 kb on - strand, within AO356_02315 at 499.533 kb on - strand, within AO356_02315 at 499.533 kb on - strand, within AO356_02315 at 501.915 kb on - strand at 501.915 kb on - strand at 501.915 kb on - strand at 501.917 kb on - strand at 501.917 kb on - strand at 501.917 kb on - strand at 501.917 kb on - strand at 501.917 kb on - strand at 501.917 kb on - strand at 501.917 kb on - strand at 501.917 kb on - strand at 501.917 kb on - strand at 501.917 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.919 kb on - strand at 501.921 kb on - strand at 501.921 kb on - strand at 502.092 kb on + strand, within AO356_02320 at 502.093 kb on - strand, within AO356_02320 at 502.104 kb on + strand, within AO356_02320 at 502.104 kb on + strand, within AO356_02320 at 502.105 kb on - strand, within AO356_02320 at 502.151 kb on + strand, within AO356_02320 at 502.151 kb on + strand, within AO356_02320 at 502.152 kb on - strand, within AO356_02320 at 502.152 kb on - strand, within AO356_02320 at 502.173 kb on + strand, within AO356_02320 at 502.173 kb on + strand, within AO356_02320 at 502.173 kb on + strand, within AO356_02320 at 502.173 kb on + strand, within AO356_02320 at 502.173 kb on + strand, within AO356_02320 at 502.173 kb on + strand, within AO356_02320 at 502.173 kb on + strand, within AO356_02320 at 502.174 kb on - strand, within AO356_02320 at 502.174 kb on - strand, within AO356_02320 at 502.174 kb on - strand, within AO356_02320 at 502.196 kb on + strand at 502.252 kb on + strand at 502.253 kb on - strand at 502.255 kb on + strand at 502.314 kb on + strand at 502.424 kb on - strand at 502.481 kb on - strand, within AO356_02325 at 502.633 kb on - strand, within AO356_02325
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 498,259 + AO356_02305 0.51 +0.1 498,259 + AO356_02305 0.51 +0.6 498,259 + AO356_02305 0.51 -0.4 498,260 - AO356_02305 0.52 +0.1 498,366 + +0.8 498,366 + +0.5 498,366 + -1.2 498,366 + -1.4 498,372 + -0.4 498,372 + -0.5 498,372 + -1.0 498,373 - +0.1 498,373 - -0.0 498,373 - -0.3 498,373 - -0.4 498,373 - -0.6 498,373 - -0.9 498,373 - +0.6 498,403 + -1.1 498,403 + +0.6 498,403 + +0.0 498,403 + +0.1 498,404 - +1.3 498,404 - +0.2 498,404 - -1.3 498,404 - -1.9 498,405 + +0.8 498,405 + +0.4 498,405 + -1.1 498,405 + -0.2 498,405 + +0.0 498,405 + -0.1 498,405 + +0.4 498,405 + -0.3 498,405 + +1.2 498,406 - +0.8 498,406 - +0.9 498,406 - -1.2 498,406 - -0.4 498,406 - +1.6 498,406 - -0.2 498,406 - +0.2 498,406 - +0.7 498,406 - +0.1 498,406 - +0.9 498,406 - +0.1 498,406 - +0.5 498,406 - +0.0 498,407 + -0.3 498,407 + -0.9 498,407 + +0.7 498,407 + -0.4 498,408 - +0.7 498,408 - -1.0 498,408 - +0.6 498,408 - -0.3 498,408 - -0.1 498,460 + -0.2 498,461 - +0.3 498,680 + AO356_02310 0.38 -1.6 498,680 + AO356_02310 0.38 +1.8 498,681 - AO356_02310 0.38 +0.5 498,855 + AO356_02310 0.72 +0.1 498,856 - AO356_02310 0.72 +0.2 498,963 + -0.1 498,987 + -0.5 498,987 + +0.8 498,987 + +0.9 498,988 - +0.1 499,107 + +0.1 499,107 + +0.4 499,107 + -0.1 499,108 - +0.5 499,149 + +0.5 499,150 - +0.1 499,158 + +0.8 499,158 + +0.6 499,159 - +0.1 499,159 - +0.2 499,159 - -0.9 499,159 - +0.5 499,281 - +0.0 499,281 - -0.7 499,281 - -1.6 499,325 + -0.3 499,410 - -0.1 499,532 + AO356_02315 0.11 +0.7 499,532 + AO356_02315 0.11 -2.1 499,532 + AO356_02315 0.11 -0.6 499,533 - AO356_02315 0.11 -1.0 499,533 - AO356_02315 0.11 -1.4 499,533 - AO356_02315 0.11 +0.1 499,533 - AO356_02315 0.11 -0.3 499,533 - AO356_02315 0.11 -1.7 501,915 - +0.7 501,915 - -1.0 501,915 - -0.6 501,917 - -0.3 501,917 - +0.3 501,917 - +1.1 501,917 - +0.9 501,917 - +0.1 501,917 - -0.1 501,917 - +0.9 501,917 - +0.7 501,917 - +0.6 501,917 - +0.5 501,919 - +0.2 501,919 - -0.7 501,919 - +1.0 501,919 - +0.2 501,919 - +0.2 501,919 - -0.1 501,919 - +0.1 501,919 - -1.0 501,919 - +0.1 501,919 - +0.3 501,919 - -0.8 501,919 - -0.7 501,919 - +0.8 501,919 - +0.4 501,919 - +0.1 501,919 - +1.6 501,919 - -0.7 501,919 - +0.2 501,921 - -1.5 501,921 - +0.6 502,092 + AO356_02320 0.52 -0.4 502,093 - AO356_02320 0.53 +0.5 502,104 + AO356_02320 0.57 +0.4 502,104 + AO356_02320 0.57 -0.1 502,105 - AO356_02320 0.58 -1.2 502,151 + AO356_02320 0.77 +0.1 502,151 + AO356_02320 0.77 +0.7 502,152 - AO356_02320 0.78 +0.1 502,152 - AO356_02320 0.78 +0.0 502,173 + AO356_02320 0.86 +0.5 502,173 + AO356_02320 0.86 -0.0 502,173 + AO356_02320 0.86 +0.7 502,173 + AO356_02320 0.86 +0.3 502,173 + AO356_02320 0.86 +0.3 502,173 + AO356_02320 0.86 -1.1 502,173 + AO356_02320 0.86 -0.5 502,174 - AO356_02320 0.87 +0.1 502,174 - AO356_02320 0.87 -0.2 502,174 - AO356_02320 0.87 -0.4 502,196 + +0.6 502,252 + -0.4 502,253 - +0.1 502,255 + -0.1 502,314 + -1.9 502,424 - -0.4 502,481 - AO356_02325 0.14 +0.3 502,633 - AO356_02325 0.27 +0.7
Or see this region's nucleotide sequence