Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01030 and AO356_01035 are separated by 15 nucleotides AO356_01035 and AO356_01040 overlap by 4 nucleotides AO356_01040 and AO356_01045 are separated by 226 nucleotides
AO356_01030: AO356_01030 - hemolysin D, at 231,858 to 233,057
_01030
AO356_01035: AO356_01035 - multidrug RND transporter, at 233,073 to 234,542
_01035
AO356_01040: AO356_01040 - MarR family transcriptional regulator, at 234,539 to 235,012
_01040
AO356_01045: AO356_01045 - hypothetical protein, at 235,239 to 238,925
_01045
Position (kb) 233
234
235 Strain fitness (log2 ratio) -1
0
1
2 at 232.125 kb on - strand, within AO356_01030 at 232.382 kb on - strand, within AO356_01030 at 232.382 kb on - strand, within AO356_01030 at 232.382 kb on - strand, within AO356_01030 at 232.627 kb on + strand, within AO356_01030 at 232.700 kb on - strand, within AO356_01030 at 232.888 kb on + strand, within AO356_01030 at 232.888 kb on + strand, within AO356_01030 at 232.889 kb on - strand, within AO356_01030 at 232.889 kb on - strand, within AO356_01030 at 232.922 kb on - strand, within AO356_01030 at 232.922 kb on - strand, within AO356_01030 at 233.064 kb on + strand at 233.065 kb on - strand at 233.065 kb on - strand at 233.245 kb on + strand, within AO356_01035 at 233.246 kb on - strand, within AO356_01035 at 233.246 kb on - strand, within AO356_01035 at 233.249 kb on + strand, within AO356_01035 at 233.250 kb on - strand, within AO356_01035 at 233.250 kb on - strand, within AO356_01035 at 233.287 kb on + strand, within AO356_01035 at 233.288 kb on - strand, within AO356_01035 at 233.404 kb on + strand, within AO356_01035 at 233.404 kb on + strand, within AO356_01035 at 233.405 kb on - strand, within AO356_01035 at 233.425 kb on + strand, within AO356_01035 at 233.587 kb on + strand, within AO356_01035 at 234.109 kb on + strand, within AO356_01035 at 234.110 kb on - strand, within AO356_01035 at 234.145 kb on + strand, within AO356_01035 at 234.145 kb on + strand, within AO356_01035 at 234.146 kb on - strand, within AO356_01035 at 234.247 kb on + strand, within AO356_01035 at 234.248 kb on - strand, within AO356_01035 at 234.469 kb on + strand at 234.469 kb on + strand at 234.470 kb on - strand at 234.470 kb on - strand at 234.590 kb on + strand, within AO356_01040 at 235.045 kb on + strand at 235.240 kb on + strand at 235.262 kb on + strand at 235.263 kb on - strand at 235.301 kb on - strand at 235.301 kb on - strand at 235.321 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 232,125 - AO356_01030 0.22 +0.2 232,382 - AO356_01030 0.44 -1.3 232,382 - AO356_01030 0.44 +0.3 232,382 - AO356_01030 0.44 +0.3 232,627 + AO356_01030 0.64 +0.2 232,700 - AO356_01030 0.70 +1.8 232,888 + AO356_01030 0.86 +0.4 232,888 + AO356_01030 0.86 -0.1 232,889 - AO356_01030 0.86 -0.2 232,889 - AO356_01030 0.86 -0.1 232,922 - AO356_01030 0.89 -0.4 232,922 - AO356_01030 0.89 -0.6 233,064 + +0.8 233,065 - -0.3 233,065 - +1.3 233,245 + AO356_01035 0.12 +0.2 233,246 - AO356_01035 0.12 -1.0 233,246 - AO356_01035 0.12 -0.4 233,249 + AO356_01035 0.12 +0.3 233,250 - AO356_01035 0.12 -0.7 233,250 - AO356_01035 0.12 +0.2 233,287 + AO356_01035 0.15 -0.4 233,288 - AO356_01035 0.15 -0.1 233,404 + AO356_01035 0.23 -0.2 233,404 + AO356_01035 0.23 +1.3 233,405 - AO356_01035 0.23 +0.1 233,425 + AO356_01035 0.24 -0.4 233,587 + AO356_01035 0.35 +0.1 234,109 + AO356_01035 0.70 +0.4 234,110 - AO356_01035 0.71 -0.2 234,145 + AO356_01035 0.73 -0.3 234,145 + AO356_01035 0.73 -1.4 234,146 - AO356_01035 0.73 -1.2 234,247 + AO356_01035 0.80 -0.2 234,248 - AO356_01035 0.80 -0.6 234,469 + -0.0 234,469 + +0.4 234,470 - +0.7 234,470 - +0.7 234,590 + AO356_01040 0.11 +0.1 235,045 + +0.4 235,240 + +0.5 235,262 + +0.6 235,263 - -0.0 235,301 - +0.8 235,301 - -0.7 235,321 + +0.3
Or see this region's nucleotide sequence