Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36795

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36785 and RR42_RS36790 are separated by 137 nucleotidesRR42_RS36790 and RR42_RS36795 are separated by 170 nucleotidesRR42_RS36795 and RR42_RS36800 are separated by 412 nucleotides RR42_RS36785: RR42_RS36785 - hypothetical protein, at 3,707,107 to 3,707,310 _RS36785 RR42_RS36790: RR42_RS36790 - membrane protein, at 3,707,448 to 3,708,047 _RS36790 RR42_RS36795: RR42_RS36795 - fumarate hydratase, at 3,708,218 to 3,708,718 _RS36795 RR42_RS36800: RR42_RS36800 - SAM-dependent methyltransferase, at 3,709,131 to 3,709,748 _RS36800 Position (kb) 3708 3709Strain fitness (log2 ratio) -2 -1 0 1 2at 3707.236 kb on + strand, within RR42_RS36785at 3707.305 kb on + strandat 3707.306 kb on - strandat 3707.306 kb on - strandat 3707.560 kb on - strand, within RR42_RS36790at 3707.561 kb on + strand, within RR42_RS36790at 3707.561 kb on + strand, within RR42_RS36790at 3707.580 kb on + strand, within RR42_RS36790at 3707.581 kb on - strand, within RR42_RS36790at 3707.741 kb on + strand, within RR42_RS36790at 3707.741 kb on + strand, within RR42_RS36790at 3707.741 kb on + strand, within RR42_RS36790at 3707.742 kb on - strand, within RR42_RS36790at 3707.877 kb on + strand, within RR42_RS36790at 3707.878 kb on - strand, within RR42_RS36790at 3707.944 kb on - strand, within RR42_RS36790at 3708.054 kb on + strandat 3708.054 kb on + strandat 3708.054 kb on + strandat 3708.054 kb on + strandat 3708.055 kb on - strandat 3708.164 kb on + strandat 3708.165 kb on - strandat 3708.184 kb on + strandat 3708.203 kb on - strandat 3708.203 kb on - strandat 3708.213 kb on + strandat 3708.214 kb on - strandat 3708.225 kb on + strandat 3708.392 kb on - strand, within RR42_RS36795at 3708.392 kb on - strand, within RR42_RS36795at 3708.989 kb on - strandat 3709.298 kb on + strand, within RR42_RS36800at 3709.298 kb on + strand, within RR42_RS36800at 3709.327 kb on + strand, within RR42_RS36800at 3709.329 kb on + strand, within RR42_RS36800at 3709.329 kb on + strand, within RR42_RS36800at 3709.329 kb on + strand, within RR42_RS36800at 3709.330 kb on - strand, within RR42_RS36800at 3709.330 kb on - strand, within RR42_RS36800at 3709.330 kb on - strand, within RR42_RS36800at 3709.330 kb on - strand, within RR42_RS36800at 3709.330 kb on - strand, within RR42_RS36800at 3709.330 kb on - strand, within RR42_RS36800at 3709.333 kb on + strand, within RR42_RS36800at 3709.333 kb on + strand, within RR42_RS36800at 3709.333 kb on + strand, within RR42_RS36800at 3709.334 kb on - strand, within RR42_RS36800at 3709.334 kb on - strand, within RR42_RS36800at 3709.334 kb on - strand, within RR42_RS36800at 3709.497 kb on - strand, within RR42_RS36800at 3709.497 kb on - strand, within RR42_RS36800

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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3,707,236 + RR42_RS36785 0.63 +0.6
3,707,305 + +0.1
3,707,306 - -0.4
3,707,306 - +0.2
3,707,560 - RR42_RS36790 0.19 -1.9
3,707,561 + RR42_RS36790 0.19 +0.3
3,707,561 + RR42_RS36790 0.19 -1.1
3,707,580 + RR42_RS36790 0.22 +0.0
3,707,581 - RR42_RS36790 0.22 +0.7
3,707,741 + RR42_RS36790 0.49 -0.3
3,707,741 + RR42_RS36790 0.49 -0.4
3,707,741 + RR42_RS36790 0.49 -0.2
3,707,742 - RR42_RS36790 0.49 +0.9
3,707,877 + RR42_RS36790 0.71 -0.2
3,707,878 - RR42_RS36790 0.72 +0.1
3,707,944 - RR42_RS36790 0.83 -0.4
3,708,054 + +0.5
3,708,054 + +0.8
3,708,054 + +0.5
3,708,054 + +0.7
3,708,055 - +0.3
3,708,164 + +0.1
3,708,165 - +0.2
3,708,184 + +0.6
3,708,203 - +0.1
3,708,203 - -0.8
3,708,213 + -0.4
3,708,214 - +0.7
3,708,225 + +2.0
3,708,392 - RR42_RS36795 0.35 +1.7
3,708,392 - RR42_RS36795 0.35 +0.6
3,708,989 - +0.2
3,709,298 + RR42_RS36800 0.27 +0.1
3,709,298 + RR42_RS36800 0.27 -0.0
3,709,327 + RR42_RS36800 0.32 -1.0
3,709,329 + RR42_RS36800 0.32 +0.4
3,709,329 + RR42_RS36800 0.32 +1.1
3,709,329 + RR42_RS36800 0.32 +0.5
3,709,330 - RR42_RS36800 0.32 -0.3
3,709,330 - RR42_RS36800 0.32 -0.9
3,709,330 - RR42_RS36800 0.32 -0.3
3,709,330 - RR42_RS36800 0.32 +0.6
3,709,330 - RR42_RS36800 0.32 -0.0
3,709,330 - RR42_RS36800 0.32 -0.4
3,709,333 + RR42_RS36800 0.33 -0.2
3,709,333 + RR42_RS36800 0.33 -0.6
3,709,333 + RR42_RS36800 0.33 -1.2
3,709,334 - RR42_RS36800 0.33 +0.6
3,709,334 - RR42_RS36800 0.33 -0.1
3,709,334 - RR42_RS36800 0.33 +0.0
3,709,497 - RR42_RS36800 0.59 -0.4
3,709,497 - RR42_RS36800 0.59 -0.4

Or see this region's nucleotide sequence