Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24565 and RR42_RS24570 are separated by 13 nucleotides RR42_RS24570 and RR42_RS24575 are separated by 714 nucleotides
RR42_RS24565: RR42_RS24565 - monooxygenase, at 843,821 to 845,275
_RS24565
RR42_RS24570: RR42_RS24570 - alpha/beta hydrolase, at 845,289 to 846,266
_RS24570
RR42_RS24575: RR42_RS24575 - endoribonuclease L-PSP, at 846,981 to 847,394
_RS24575
Position (kb) 845
846
847 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 844.292 kb on + strand, within RR42_RS24565 at 844.293 kb on - strand, within RR42_RS24565 at 844.293 kb on - strand, within RR42_RS24565 at 844.379 kb on + strand, within RR42_RS24565 at 844.380 kb on - strand, within RR42_RS24565 at 844.670 kb on + strand, within RR42_RS24565 at 844.670 kb on + strand, within RR42_RS24565 at 844.671 kb on - strand, within RR42_RS24565 at 844.710 kb on - strand, within RR42_RS24565 at 844.710 kb on - strand, within RR42_RS24565 at 844.925 kb on + strand, within RR42_RS24565 at 844.970 kb on + strand, within RR42_RS24565 at 844.970 kb on + strand, within RR42_RS24565 at 844.971 kb on - strand, within RR42_RS24565 at 845.033 kb on + strand, within RR42_RS24565 at 845.034 kb on - strand, within RR42_RS24565 at 845.034 kb on - strand, within RR42_RS24565 at 845.034 kb on - strand, within RR42_RS24565 at 845.111 kb on + strand, within RR42_RS24565 at 845.111 kb on + strand, within RR42_RS24565 at 845.112 kb on - strand, within RR42_RS24565 at 845.112 kb on - strand, within RR42_RS24565 at 845.112 kb on - strand, within RR42_RS24565 at 845.112 kb on - strand, within RR42_RS24565 at 845.174 kb on + strand at 845.174 kb on + strand at 845.175 kb on - strand at 845.318 kb on - strand at 845.382 kb on + strand at 845.674 kb on - strand, within RR42_RS24570 at 845.744 kb on - strand, within RR42_RS24570 at 845.813 kb on + strand, within RR42_RS24570 at 845.853 kb on + strand, within RR42_RS24570 at 845.854 kb on - strand, within RR42_RS24570 at 845.864 kb on - strand, within RR42_RS24570 at 845.864 kb on - strand, within RR42_RS24570 at 845.864 kb on - strand, within RR42_RS24570 at 845.898 kb on - strand, within RR42_RS24570 at 845.898 kb on - strand, within RR42_RS24570 at 845.980 kb on - strand, within RR42_RS24570 at 846.028 kb on + strand, within RR42_RS24570 at 846.062 kb on + strand, within RR42_RS24570 at 846.108 kb on + strand, within RR42_RS24570 at 846.220 kb on + strand at 846.235 kb on + strand at 846.236 kb on - strand at 846.327 kb on - strand at 846.432 kb on + strand at 846.650 kb on - strand at 846.915 kb on - strand at 846.961 kb on + strand at 846.995 kb on + strand at 847.035 kb on + strand, within RR42_RS24575 at 847.036 kb on - strand, within RR42_RS24575
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 844,292 + RR42_RS24565 0.32 +0.3 844,293 - RR42_RS24565 0.32 +0.1 844,293 - RR42_RS24565 0.32 +0.2 844,379 + RR42_RS24565 0.38 -0.6 844,380 - RR42_RS24565 0.38 +0.3 844,670 + RR42_RS24565 0.58 -1.2 844,670 + RR42_RS24565 0.58 -1.6 844,671 - RR42_RS24565 0.58 -0.4 844,710 - RR42_RS24565 0.61 +2.4 844,710 - RR42_RS24565 0.61 +0.4 844,925 + RR42_RS24565 0.76 -0.0 844,970 + RR42_RS24565 0.79 +1.2 844,970 + RR42_RS24565 0.79 -1.2 844,971 - RR42_RS24565 0.79 +0.5 845,033 + RR42_RS24565 0.83 +1.0 845,034 - RR42_RS24565 0.83 +0.0 845,034 - RR42_RS24565 0.83 -3.2 845,034 - RR42_RS24565 0.83 -1.3 845,111 + RR42_RS24565 0.89 -0.1 845,111 + RR42_RS24565 0.89 -0.3 845,112 - RR42_RS24565 0.89 +0.2 845,112 - RR42_RS24565 0.89 +1.4 845,112 - RR42_RS24565 0.89 -0.3 845,112 - RR42_RS24565 0.89 +0.3 845,174 + +0.4 845,174 + -0.5 845,175 - -0.8 845,318 - -0.8 845,382 + +0.3 845,674 - RR42_RS24570 0.39 +1.3 845,744 - RR42_RS24570 0.47 -0.3 845,813 + RR42_RS24570 0.54 +0.3 845,853 + RR42_RS24570 0.58 +0.2 845,854 - RR42_RS24570 0.58 -0.2 845,864 - RR42_RS24570 0.59 -0.2 845,864 - RR42_RS24570 0.59 +0.8 845,864 - RR42_RS24570 0.59 -0.5 845,898 - RR42_RS24570 0.62 +0.3 845,898 - RR42_RS24570 0.62 -1.0 845,980 - RR42_RS24570 0.71 -0.2 846,028 + RR42_RS24570 0.76 -0.2 846,062 + RR42_RS24570 0.79 -0.3 846,108 + RR42_RS24570 0.84 -0.6 846,220 + +0.5 846,235 + -0.3 846,236 - +1.6 846,327 - -0.5 846,432 + +0.5 846,650 - +0.2 846,915 - +0.0 846,961 + -0.5 846,995 + +0.6 847,035 + RR42_RS24575 0.13 -0.0 847,036 - RR42_RS24575 0.13 +0.5
Or see this region's nucleotide sequence