Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24125

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24120 and RR42_RS24125 are separated by 138 nucleotidesRR42_RS24125 and RR42_RS24130 overlap by 1 nucleotidesRR42_RS24130 and RR42_RS24135 are separated by 122 nucleotides RR42_RS24120: RR42_RS24120 - C4-dicarboxylate ABC transporter substrate-binding protein, at 735,498 to 736,481 _RS24120 RR42_RS24125: RR42_RS24125 - hypothetical protein, at 736,620 to 740,075 _RS24125 RR42_RS24130: RR42_RS24130 - hypothetical protein, at 740,075 to 740,494 _RS24130 RR42_RS24135: RR42_RS24135 - hypothetical protein, at 740,617 to 741,528 _RS24135 Position (kb) 736 737 738 739 740 741Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 735.809 kb on - strand, within RR42_RS24120at 735.836 kb on + strand, within RR42_RS24120at 735.916 kb on + strand, within RR42_RS24120at 735.916 kb on + strand, within RR42_RS24120at 735.943 kb on - strand, within RR42_RS24120at 735.943 kb on - strand, within RR42_RS24120at 735.943 kb on - strand, within RR42_RS24120at 735.943 kb on - strand, within RR42_RS24120at 735.963 kb on + strand, within RR42_RS24120at 736.117 kb on + strand, within RR42_RS24120at 736.117 kb on + strand, within RR42_RS24120at 736.118 kb on - strand, within RR42_RS24120at 736.118 kb on - strand, within RR42_RS24120at 736.169 kb on + strand, within RR42_RS24120at 736.170 kb on - strand, within RR42_RS24120at 736.170 kb on - strand, within RR42_RS24120at 736.170 kb on - strand, within RR42_RS24120at 736.201 kb on + strand, within RR42_RS24120at 736.201 kb on + strand, within RR42_RS24120at 736.226 kb on + strand, within RR42_RS24120at 736.226 kb on + strand, within RR42_RS24120at 736.299 kb on + strand, within RR42_RS24120at 736.299 kb on + strand, within RR42_RS24120at 736.300 kb on - strand, within RR42_RS24120at 736.471 kb on - strandat 736.497 kb on - strandat 736.504 kb on + strandat 736.504 kb on + strandat 736.505 kb on - strandat 736.655 kb on + strandat 736.655 kb on + strandat 736.669 kb on - strandat 736.669 kb on - strandat 736.735 kb on + strandat 736.735 kb on + strandat 736.736 kb on - strandat 736.912 kb on + strandat 736.912 kb on + strandat 736.913 kb on - strandat 736.913 kb on - strandat 736.913 kb on - strandat 736.913 kb on - strandat 736.994 kb on - strand, within RR42_RS24125at 737.013 kb on + strand, within RR42_RS24125at 737.013 kb on + strand, within RR42_RS24125at 737.013 kb on + strand, within RR42_RS24125at 737.013 kb on + strand, within RR42_RS24125at 737.014 kb on - strand, within RR42_RS24125at 737.053 kb on + strand, within RR42_RS24125at 737.128 kb on + strand, within RR42_RS24125at 737.128 kb on + strand, within RR42_RS24125at 737.129 kb on - strand, within RR42_RS24125at 737.446 kb on + strand, within RR42_RS24125at 737.446 kb on + strand, within RR42_RS24125at 737.447 kb on - strand, within RR42_RS24125at 737.447 kb on - strand, within RR42_RS24125at 737.651 kb on + strand, within RR42_RS24125at 737.716 kb on + strand, within RR42_RS24125at 737.716 kb on + strand, within RR42_RS24125at 737.717 kb on - strand, within RR42_RS24125at 737.739 kb on + strand, within RR42_RS24125at 737.739 kb on + strand, within RR42_RS24125at 737.739 kb on + strand, within RR42_RS24125at 737.739 kb on + strand, within RR42_RS24125at 737.739 kb on + strand, within RR42_RS24125at 737.831 kb on - strand, within RR42_RS24125at 737.920 kb on + strand, within RR42_RS24125at 737.920 kb on + strand, within RR42_RS24125at 737.920 kb on + strand, within RR42_RS24125at 737.921 kb on - strand, within RR42_RS24125at 737.921 kb on - strand, within RR42_RS24125at 737.921 kb on - strand, within RR42_RS24125at 737.921 kb on - strand, within RR42_RS24125at 737.929 kb on + strand, within RR42_RS24125at 737.930 kb on - strand, within RR42_RS24125at 738.205 kb on - strand, within RR42_RS24125at 738.271 kb on + strand, within RR42_RS24125at 738.294 kb on - strand, within RR42_RS24125at 738.294 kb on - strand, within RR42_RS24125at 738.377 kb on - strand, within RR42_RS24125at 738.399 kb on + strand, within RR42_RS24125at 738.400 kb on - strand, within RR42_RS24125at 738.429 kb on + strand, within RR42_RS24125at 738.429 kb on + strand, within RR42_RS24125at 738.429 kb on + strand, within RR42_RS24125at 738.430 kb on - strand, within RR42_RS24125at 738.430 kb on - strand, within RR42_RS24125at 738.562 kb on + strand, within RR42_RS24125at 738.562 kb on + strand, within RR42_RS24125at 738.622 kb on + strand, within RR42_RS24125at 738.948 kb on + strand, within RR42_RS24125at 739.294 kb on + strand, within RR42_RS24125at 739.294 kb on + strand, within RR42_RS24125at 739.295 kb on - strand, within RR42_RS24125at 739.295 kb on - strand, within RR42_RS24125at 739.325 kb on - strand, within RR42_RS24125at 739.385 kb on + strand, within RR42_RS24125at 739.385 kb on + strand, within RR42_RS24125at 739.385 kb on + strand, within RR42_RS24125at 739.386 kb on - strand, within RR42_RS24125at 739.488 kb on + strand, within RR42_RS24125at 739.570 kb on + strand, within RR42_RS24125at 739.615 kb on + strand, within RR42_RS24125at 739.616 kb on - strand, within RR42_RS24125at 739.655 kb on + strand, within RR42_RS24125at 739.655 kb on + strand, within RR42_RS24125at 739.747 kb on + strandat 739.747 kb on + strandat 739.747 kb on + strandat 739.747 kb on + strandat 739.754 kb on - strandat 739.754 kb on - strandat 740.051 kb on - strandat 740.077 kb on - strandat 740.113 kb on + strandat 740.114 kb on - strandat 740.114 kb on - strandat 740.114 kb on - strandat 740.159 kb on + strand, within RR42_RS24130at 740.159 kb on + strand, within RR42_RS24130at 740.160 kb on - strand, within RR42_RS24130at 740.160 kb on - strand, within RR42_RS24130at 740.191 kb on + strand, within RR42_RS24130at 740.191 kb on + strand, within RR42_RS24130at 740.192 kb on - strand, within RR42_RS24130at 740.192 kb on - strand, within RR42_RS24130at 740.195 kb on + strand, within RR42_RS24130at 740.196 kb on - strand, within RR42_RS24130at 740.236 kb on - strand, within RR42_RS24130at 740.242 kb on - strand, within RR42_RS24130at 740.274 kb on + strand, within RR42_RS24130at 740.274 kb on + strand, within RR42_RS24130at 740.275 kb on - strand, within RR42_RS24130at 740.275 kb on - strand, within RR42_RS24130at 740.333 kb on + strand, within RR42_RS24130at 740.333 kb on + strand, within RR42_RS24130at 740.334 kb on - strand, within RR42_RS24130at 740.334 kb on - strand, within RR42_RS24130at 740.377 kb on - strand, within RR42_RS24130at 740.400 kb on - strand, within RR42_RS24130at 740.400 kb on - strand, within RR42_RS24130at 740.400 kb on - strand, within RR42_RS24130at 740.448 kb on - strand, within RR42_RS24130at 740.448 kb on - strand, within RR42_RS24130at 740.480 kb on + strandat 740.480 kb on + strandat 740.509 kb on + strandat 740.510 kb on - strandat 740.539 kb on + strandat 740.540 kb on - strandat 740.571 kb on + strandat 740.572 kb on - strandat 740.603 kb on + strandat 740.942 kb on - strand, within RR42_RS24135

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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735,809 - RR42_RS24120 0.32 -0.8
735,836 + RR42_RS24120 0.34 -0.3
735,916 + RR42_RS24120 0.42 -1.4
735,916 + RR42_RS24120 0.42 -0.1
735,943 - RR42_RS24120 0.45 -0.4
735,943 - RR42_RS24120 0.45 -3.0
735,943 - RR42_RS24120 0.45 +0.4
735,943 - RR42_RS24120 0.45 +1.0
735,963 + RR42_RS24120 0.47 -1.4
736,117 + RR42_RS24120 0.63 -1.5
736,117 + RR42_RS24120 0.63 +1.1
736,118 - RR42_RS24120 0.63 -0.1
736,118 - RR42_RS24120 0.63 +0.3
736,169 + RR42_RS24120 0.68 -1.1
736,170 - RR42_RS24120 0.68 -1.0
736,170 - RR42_RS24120 0.68 -0.3
736,170 - RR42_RS24120 0.68 -0.1
736,201 + RR42_RS24120 0.71 -0.2
736,201 + RR42_RS24120 0.71 -0.1
736,226 + RR42_RS24120 0.74 -0.9
736,226 + RR42_RS24120 0.74 +0.1
736,299 + RR42_RS24120 0.81 +0.2
736,299 + RR42_RS24120 0.81 -0.1
736,300 - RR42_RS24120 0.82 +0.2
736,471 - +0.2
736,497 - -0.8
736,504 + -0.6
736,504 + +1.9
736,505 - -1.3
736,655 + +1.0
736,655 + +0.1
736,669 - +0.3
736,669 - +0.0
736,735 + +0.3
736,735 + -1.0
736,736 - -0.4
736,912 + +0.2
736,912 + -1.1
736,913 - +0.0
736,913 - +0.6
736,913 - -0.1
736,913 - -0.7
736,994 - RR42_RS24125 0.11 -0.1
737,013 + RR42_RS24125 0.11 -0.6
737,013 + RR42_RS24125 0.11 -1.2
737,013 + RR42_RS24125 0.11 +1.7
737,013 + RR42_RS24125 0.11 -0.2
737,014 - RR42_RS24125 0.11 -0.4
737,053 + RR42_RS24125 0.13 +0.7
737,128 + RR42_RS24125 0.15 -0.3
737,128 + RR42_RS24125 0.15 -0.1
737,129 - RR42_RS24125 0.15 -1.4
737,446 + RR42_RS24125 0.24 -0.1
737,446 + RR42_RS24125 0.24 -0.0
737,447 - RR42_RS24125 0.24 -0.6
737,447 - RR42_RS24125 0.24 +0.2
737,651 + RR42_RS24125 0.30 +0.6
737,716 + RR42_RS24125 0.32 +0.8
737,716 + RR42_RS24125 0.32 -1.3
737,717 - RR42_RS24125 0.32 -0.0
737,739 + RR42_RS24125 0.32 -0.9
737,739 + RR42_RS24125 0.32 -0.1
737,739 + RR42_RS24125 0.32 -1.4
737,739 + RR42_RS24125 0.32 +0.3
737,739 + RR42_RS24125 0.32 -0.3
737,831 - RR42_RS24125 0.35 +0.3
737,920 + RR42_RS24125 0.38 -0.5
737,920 + RR42_RS24125 0.38 +0.4
737,920 + RR42_RS24125 0.38 +0.6
737,921 - RR42_RS24125 0.38 -0.4
737,921 - RR42_RS24125 0.38 -0.7
737,921 - RR42_RS24125 0.38 -0.4
737,921 - RR42_RS24125 0.38 -0.2
737,929 + RR42_RS24125 0.38 -0.6
737,930 - RR42_RS24125 0.38 +0.8
738,205 - RR42_RS24125 0.46 -0.3
738,271 + RR42_RS24125 0.48 -0.3
738,294 - RR42_RS24125 0.48 -1.6
738,294 - RR42_RS24125 0.48 -0.3
738,377 - RR42_RS24125 0.51 +0.1
738,399 + RR42_RS24125 0.51 +0.2
738,400 - RR42_RS24125 0.52 -0.0
738,429 + RR42_RS24125 0.52 +0.0
738,429 + RR42_RS24125 0.52 -0.1
738,429 + RR42_RS24125 0.52 -1.3
738,430 - RR42_RS24125 0.52 -0.5
738,430 - RR42_RS24125 0.52 -0.8
738,562 + RR42_RS24125 0.56 +0.3
738,562 + RR42_RS24125 0.56 -0.8
738,622 + RR42_RS24125 0.58 +0.1
738,948 + RR42_RS24125 0.67 +0.4
739,294 + RR42_RS24125 0.77 +0.1
739,294 + RR42_RS24125 0.77 +0.2
739,295 - RR42_RS24125 0.77 +0.5
739,295 - RR42_RS24125 0.77 -0.6
739,325 - RR42_RS24125 0.78 +0.2
739,385 + RR42_RS24125 0.80 +0.8
739,385 + RR42_RS24125 0.80 -0.4
739,385 + RR42_RS24125 0.80 +0.1
739,386 - RR42_RS24125 0.80 -0.6
739,488 + RR42_RS24125 0.83 -0.4
739,570 + RR42_RS24125 0.85 -0.2
739,615 + RR42_RS24125 0.87 -0.3
739,616 - RR42_RS24125 0.87 -0.8
739,655 + RR42_RS24125 0.88 -1.8
739,655 + RR42_RS24125 0.88 -0.8
739,747 + +0.6
739,747 + +0.8
739,747 + +0.0
739,747 + -1.3
739,754 - -1.0
739,754 - +0.2
740,051 - -0.6
740,077 - +0.1
740,113 + -0.2
740,114 - -0.5
740,114 - +2.0
740,114 - +0.2
740,159 + RR42_RS24130 0.20 -0.2
740,159 + RR42_RS24130 0.20 +0.2
740,160 - RR42_RS24130 0.20 +0.6
740,160 - RR42_RS24130 0.20 +0.6
740,191 + RR42_RS24130 0.28 +0.2
740,191 + RR42_RS24130 0.28 -2.9
740,192 - RR42_RS24130 0.28 +0.5
740,192 - RR42_RS24130 0.28 -0.6
740,195 + RR42_RS24130 0.29 -2.8
740,196 - RR42_RS24130 0.29 -0.5
740,236 - RR42_RS24130 0.38 +0.4
740,242 - RR42_RS24130 0.40 +0.2
740,274 + RR42_RS24130 0.47 -0.5
740,274 + RR42_RS24130 0.47 +0.4
740,275 - RR42_RS24130 0.48 -0.0
740,275 - RR42_RS24130 0.48 +0.2
740,333 + RR42_RS24130 0.61 +0.3
740,333 + RR42_RS24130 0.61 -0.1
740,334 - RR42_RS24130 0.62 +0.8
740,334 - RR42_RS24130 0.62 +0.3
740,377 - RR42_RS24130 0.72 +0.3
740,400 - RR42_RS24130 0.77 +0.0
740,400 - RR42_RS24130 0.77 -0.1
740,400 - RR42_RS24130 0.77 -0.1
740,448 - RR42_RS24130 0.89 +1.2
740,448 - RR42_RS24130 0.89 -1.5
740,480 + +1.2
740,480 + -0.1
740,509 + +0.2
740,510 - -1.1
740,539 + +0.2
740,540 - -0.8
740,571 + -1.9
740,572 - +0.1
740,603 + -0.1
740,942 - RR42_RS24135 0.36 -0.2

Or see this region's nucleotide sequence