Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23060 and RR42_RS23065 are separated by 158 nucleotides RR42_RS23065 and RR42_RS23070 are separated by 162 nucleotides
RR42_RS23060: RR42_RS23060 - hypothetical protein, at 507,934 to 508,926
_RS23060
RR42_RS23065: RR42_RS23065 - L-rhamnose 1-epimerase, at 509,085 to 510,260
_RS23065
RR42_RS23070: RR42_RS23070 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 510,423 to 511,454
_RS23070
Position (kb) 509
510
511 Strain fitness (log2 ratio) -2
-1
0
1 at 508.282 kb on + strand, within RR42_RS23060 at 508.294 kb on + strand, within RR42_RS23060 at 508.294 kb on + strand, within RR42_RS23060 at 508.363 kb on + strand, within RR42_RS23060 at 508.363 kb on + strand, within RR42_RS23060 at 508.396 kb on + strand, within RR42_RS23060 at 508.495 kb on - strand, within RR42_RS23060 at 508.642 kb on + strand, within RR42_RS23060 at 508.832 kb on - strand at 508.832 kb on - strand at 508.832 kb on - strand at 508.892 kb on + strand at 508.892 kb on + strand at 508.892 kb on + strand at 509.093 kb on + strand at 509.093 kb on + strand at 509.113 kb on + strand at 509.114 kb on - strand at 509.114 kb on - strand at 509.167 kb on + strand at 509.168 kb on - strand at 509.203 kb on + strand, within RR42_RS23065 at 509.204 kb on - strand, within RR42_RS23065 at 509.204 kb on - strand, within RR42_RS23065 at 509.204 kb on - strand, within RR42_RS23065 at 509.204 kb on - strand, within RR42_RS23065 at 509.206 kb on + strand, within RR42_RS23065 at 509.206 kb on + strand, within RR42_RS23065 at 509.290 kb on + strand, within RR42_RS23065 at 509.290 kb on + strand, within RR42_RS23065 at 509.290 kb on + strand, within RR42_RS23065 at 509.290 kb on + strand, within RR42_RS23065 at 509.291 kb on - strand, within RR42_RS23065 at 509.291 kb on - strand, within RR42_RS23065 at 509.395 kb on + strand, within RR42_RS23065 at 509.443 kb on + strand, within RR42_RS23065 at 509.443 kb on + strand, within RR42_RS23065 at 509.506 kb on + strand, within RR42_RS23065 at 509.609 kb on + strand, within RR42_RS23065 at 509.610 kb on - strand, within RR42_RS23065 at 509.611 kb on + strand, within RR42_RS23065 at 509.611 kb on + strand, within RR42_RS23065 at 509.611 kb on + strand, within RR42_RS23065 at 509.611 kb on + strand, within RR42_RS23065 at 509.611 kb on + strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.612 kb on - strand, within RR42_RS23065 at 509.755 kb on + strand, within RR42_RS23065 at 509.755 kb on + strand, within RR42_RS23065 at 509.756 kb on - strand, within RR42_RS23065 at 509.801 kb on - strand, within RR42_RS23065 at 509.801 kb on - strand, within RR42_RS23065 at 509.815 kb on + strand, within RR42_RS23065 at 509.815 kb on + strand, within RR42_RS23065 at 509.815 kb on + strand, within RR42_RS23065 at 509.815 kb on + strand, within RR42_RS23065 at 509.816 kb on - strand, within RR42_RS23065 at 509.816 kb on - strand, within RR42_RS23065 at 509.816 kb on - strand, within RR42_RS23065 at 509.965 kb on + strand, within RR42_RS23065 at 509.965 kb on + strand, within RR42_RS23065 at 509.966 kb on - strand, within RR42_RS23065 at 509.983 kb on + strand, within RR42_RS23065 at 509.984 kb on - strand, within RR42_RS23065 at 509.984 kb on - strand, within RR42_RS23065 at 510.028 kb on + strand, within RR42_RS23065 at 510.029 kb on - strand, within RR42_RS23065 at 510.029 kb on - strand, within RR42_RS23065 at 510.424 kb on + strand at 510.634 kb on + strand, within RR42_RS23070 at 510.635 kb on - strand, within RR42_RS23070 at 510.635 kb on - strand, within RR42_RS23070 at 510.635 kb on - strand, within RR42_RS23070 at 510.635 kb on - strand, within RR42_RS23070 at 511.040 kb on + strand, within RR42_RS23070 at 511.154 kb on - strand, within RR42_RS23070
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 508,282 + RR42_RS23060 0.35 -0.1 508,294 + RR42_RS23060 0.36 +1.0 508,294 + RR42_RS23060 0.36 -0.3 508,363 + RR42_RS23060 0.43 +0.2 508,363 + RR42_RS23060 0.43 +0.0 508,396 + RR42_RS23060 0.47 +0.8 508,495 - RR42_RS23060 0.56 -0.6 508,642 + RR42_RS23060 0.71 +0.5 508,832 - -1.8 508,832 - +0.3 508,832 - -0.1 508,892 + -0.1 508,892 + -0.2 508,892 + +1.0 509,093 + +0.0 509,093 + -0.8 509,113 + -0.1 509,114 - +0.5 509,114 - +0.2 509,167 + +0.0 509,168 - -0.8 509,203 + RR42_RS23065 0.10 -0.7 509,204 - RR42_RS23065 0.10 -1.7 509,204 - RR42_RS23065 0.10 +1.5 509,204 - RR42_RS23065 0.10 +0.1 509,204 - RR42_RS23065 0.10 -0.1 509,206 + RR42_RS23065 0.10 -0.5 509,206 + RR42_RS23065 0.10 -0.4 509,290 + RR42_RS23065 0.17 -0.6 509,290 + RR42_RS23065 0.17 +0.2 509,290 + RR42_RS23065 0.17 +1.5 509,290 + RR42_RS23065 0.17 -0.4 509,291 - RR42_RS23065 0.18 -0.4 509,291 - RR42_RS23065 0.18 +1.2 509,395 + RR42_RS23065 0.26 -0.5 509,443 + RR42_RS23065 0.30 -0.5 509,443 + RR42_RS23065 0.30 -0.2 509,506 + RR42_RS23065 0.36 -0.5 509,609 + RR42_RS23065 0.45 -0.4 509,610 - RR42_RS23065 0.45 -0.3 509,611 + RR42_RS23065 0.45 -0.3 509,611 + RR42_RS23065 0.45 -0.7 509,611 + RR42_RS23065 0.45 -0.4 509,611 + RR42_RS23065 0.45 -0.4 509,611 + RR42_RS23065 0.45 +0.3 509,612 - RR42_RS23065 0.45 +0.1 509,612 - RR42_RS23065 0.45 +0.5 509,612 - RR42_RS23065 0.45 +0.9 509,612 - RR42_RS23065 0.45 -1.0 509,612 - RR42_RS23065 0.45 +0.0 509,612 - RR42_RS23065 0.45 +0.6 509,612 - RR42_RS23065 0.45 +0.0 509,612 - RR42_RS23065 0.45 +0.9 509,755 + RR42_RS23065 0.57 -0.6 509,755 + RR42_RS23065 0.57 +0.2 509,756 - RR42_RS23065 0.57 -0.1 509,801 - RR42_RS23065 0.61 +0.2 509,801 - RR42_RS23065 0.61 +0.2 509,815 + RR42_RS23065 0.62 +0.4 509,815 + RR42_RS23065 0.62 +0.3 509,815 + RR42_RS23065 0.62 +0.9 509,815 + RR42_RS23065 0.62 +0.4 509,816 - RR42_RS23065 0.62 +0.5 509,816 - RR42_RS23065 0.62 -0.2 509,816 - RR42_RS23065 0.62 +0.0 509,965 + RR42_RS23065 0.75 +0.2 509,965 + RR42_RS23065 0.75 +0.0 509,966 - RR42_RS23065 0.75 +0.4 509,983 + RR42_RS23065 0.76 -1.1 509,984 - RR42_RS23065 0.76 +0.3 509,984 - RR42_RS23065 0.76 -1.5 510,028 + RR42_RS23065 0.80 +1.0 510,029 - RR42_RS23065 0.80 -0.4 510,029 - RR42_RS23065 0.80 -0.4 510,424 + -0.9 510,634 + RR42_RS23070 0.20 -0.4 510,635 - RR42_RS23070 0.21 -0.7 510,635 - RR42_RS23070 0.21 +1.0 510,635 - RR42_RS23070 0.21 +0.0 510,635 - RR42_RS23070 0.21 -1.2 511,040 + RR42_RS23070 0.60 +0.1 511,154 - RR42_RS23070 0.71 +0.0
Or see this region's nucleotide sequence