Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22820 and RR42_RS22825 are separated by 127 nucleotides RR42_RS22825 and RR42_RS22830 are separated by 379 nucleotides
RR42_RS22820: RR42_RS22820 - lysine transporter LysE, at 452,642 to 453,271
_RS22820
RR42_RS22825: RR42_RS22825 - AsnC family transcriptional regulator, at 453,399 to 453,860
_RS22825
RR42_RS22830: RR42_RS22830 - phosphorylase, at 454,240 to 455,196
_RS22830
Position (kb) 453
454 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 452.466 kb on + strand at 452.547 kb on + strand at 452.548 kb on - strand at 452.553 kb on + strand at 452.553 kb on + strand at 452.643 kb on + strand at 452.896 kb on + strand, within RR42_RS22820 at 452.897 kb on - strand, within RR42_RS22820 at 452.937 kb on - strand, within RR42_RS22820 at 453.015 kb on + strand, within RR42_RS22820 at 453.015 kb on + strand, within RR42_RS22820 at 453.016 kb on - strand, within RR42_RS22820 at 453.025 kb on - strand, within RR42_RS22820 at 453.054 kb on + strand, within RR42_RS22820 at 453.055 kb on - strand, within RR42_RS22820 at 453.219 kb on + strand at 453.219 kb on + strand at 453.219 kb on + strand at 453.219 kb on + strand at 453.219 kb on + strand at 453.220 kb on - strand at 453.220 kb on - strand at 453.260 kb on + strand at 453.260 kb on + strand at 453.260 kb on + strand at 453.260 kb on + strand at 453.260 kb on + strand at 453.260 kb on + strand at 453.260 kb on + strand at 453.261 kb on - strand at 453.261 kb on - strand at 453.261 kb on - strand at 453.261 kb on - strand at 453.261 kb on - strand at 453.261 kb on - strand at 453.261 kb on - strand at 453.342 kb on - strand at 453.344 kb on + strand at 453.345 kb on - strand at 453.351 kb on - strand at 453.540 kb on + strand, within RR42_RS22825 at 453.540 kb on + strand, within RR42_RS22825 at 453.540 kb on + strand, within RR42_RS22825 at 453.543 kb on - strand, within RR42_RS22825 at 453.586 kb on + strand, within RR42_RS22825 at 453.692 kb on + strand, within RR42_RS22825 at 453.714 kb on + strand, within RR42_RS22825 at 453.714 kb on + strand, within RR42_RS22825 at 453.715 kb on - strand, within RR42_RS22825 at 453.751 kb on - strand, within RR42_RS22825 at 453.948 kb on + strand at 453.949 kb on - strand at 453.949 kb on - strand at 453.949 kb on - strand at 453.949 kb on - strand at 453.949 kb on - strand at 454.085 kb on + strand at 454.086 kb on - strand at 454.086 kb on - strand at 454.086 kb on - strand at 454.109 kb on + strand at 454.148 kb on + strand at 454.149 kb on - strand at 454.149 kb on - strand at 454.192 kb on + strand at 454.192 kb on + strand at 454.217 kb on + strand at 454.218 kb on - strand at 454.218 kb on - strand at 454.218 kb on - strand at 454.218 kb on - strand at 454.678 kb on + strand, within RR42_RS22830 at 454.678 kb on + strand, within RR42_RS22830 at 454.679 kb on - strand, within RR42_RS22830 at 454.679 kb on - strand, within RR42_RS22830 at 454.680 kb on + strand, within RR42_RS22830 at 454.681 kb on - strand, within RR42_RS22830
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 452,466 + -0.3 452,547 + +0.8 452,548 - +0.5 452,553 + +1.7 452,553 + +0.7 452,643 + +0.2 452,896 + RR42_RS22820 0.40 +0.4 452,897 - RR42_RS22820 0.40 -0.3 452,937 - RR42_RS22820 0.47 -1.0 453,015 + RR42_RS22820 0.59 -0.2 453,015 + RR42_RS22820 0.59 +0.5 453,016 - RR42_RS22820 0.59 +0.1 453,025 - RR42_RS22820 0.61 -0.6 453,054 + RR42_RS22820 0.65 -0.2 453,055 - RR42_RS22820 0.66 +0.7 453,219 + +0.9 453,219 + +0.2 453,219 + -1.9 453,219 + -0.5 453,219 + -1.3 453,220 - -0.2 453,220 - -0.9 453,260 + +0.0 453,260 + -0.1 453,260 + -0.3 453,260 + +1.0 453,260 + +0.4 453,260 + -0.9 453,260 + +1.8 453,261 - -0.3 453,261 - -1.2 453,261 - +0.0 453,261 - +0.1 453,261 - +0.3 453,261 - -0.2 453,261 - +0.0 453,342 - -0.4 453,344 + -0.5 453,345 - -0.5 453,351 - -0.4 453,540 + RR42_RS22825 0.31 -1.3 453,540 + RR42_RS22825 0.31 -0.8 453,540 + RR42_RS22825 0.31 -0.2 453,543 - RR42_RS22825 0.31 +0.6 453,586 + RR42_RS22825 0.40 +0.5 453,692 + RR42_RS22825 0.63 -0.5 453,714 + RR42_RS22825 0.68 -0.2 453,714 + RR42_RS22825 0.68 -0.0 453,715 - RR42_RS22825 0.68 -1.1 453,751 - RR42_RS22825 0.76 -0.6 453,948 + -0.8 453,949 - -0.4 453,949 - -1.5 453,949 - -0.1 453,949 - +0.1 453,949 - -0.1 454,085 + +0.6 454,086 - +0.1 454,086 - -0.5 454,086 - +0.8 454,109 + -0.5 454,148 + -0.4 454,149 - -1.0 454,149 - +1.9 454,192 + -0.6 454,192 + -1.5 454,217 + -0.1 454,218 - -0.7 454,218 - -0.4 454,218 - -0.3 454,218 - +0.2 454,678 + RR42_RS22830 0.46 -0.0 454,678 + RR42_RS22830 0.46 -0.8 454,679 - RR42_RS22830 0.46 +3.1 454,679 - RR42_RS22830 0.46 +0.3 454,680 + RR42_RS22830 0.46 -2.3 454,681 - RR42_RS22830 0.46 -0.4
Or see this region's nucleotide sequence