Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21985 and RR42_RS21990 overlap by 8 nucleotides RR42_RS21990 and RR42_RS21995 overlap by 4 nucleotides RR42_RS21995 and RR42_RS22000 are separated by 1 nucleotides
RR42_RS21985: RR42_RS21985 - sugar ABC transporter, at 263,153 to 264,598
_RS21985
RR42_RS21990: RR42_RS21990 - LPS N-acetylglucosaminyl transferase, at 264,591 to 265,577
_RS21990
RR42_RS21995: RR42_RS21995 - glycosyl transferase family 1, at 265,574 to 267,175
_RS21995
RR42_RS22000: RR42_RS22000 - histidine kinase, at 267,177 to 268,547
_RS22000
Position (kb) 265
266
267
268 Strain fitness (log2 ratio) -2
-1
0
1
2 at 264.577 kb on - strand at 264.597 kb on - strand at 264.777 kb on + strand, within RR42_RS21990 at 264.778 kb on - strand, within RR42_RS21990 at 264.778 kb on - strand, within RR42_RS21990 at 264.778 kb on - strand, within RR42_RS21990 at 264.783 kb on + strand, within RR42_RS21990 at 264.793 kb on + strand, within RR42_RS21990 at 264.793 kb on + strand, within RR42_RS21990 at 264.793 kb on + strand, within RR42_RS21990 at 265.107 kb on + strand, within RR42_RS21990 at 265.245 kb on + strand, within RR42_RS21990 at 265.246 kb on - strand, within RR42_RS21990 at 265.273 kb on - strand, within RR42_RS21990 at 265.350 kb on + strand, within RR42_RS21990 at 265.351 kb on - strand, within RR42_RS21990 at 265.351 kb on - strand, within RR42_RS21990 at 265.351 kb on - strand, within RR42_RS21990 at 265.563 kb on + strand at 265.643 kb on + strand at 265.644 kb on - strand at 265.758 kb on - strand, within RR42_RS21995 at 266.022 kb on - strand, within RR42_RS21995 at 266.022 kb on - strand, within RR42_RS21995 at 266.057 kb on + strand, within RR42_RS21995 at 266.058 kb on - strand, within RR42_RS21995 at 266.058 kb on - strand, within RR42_RS21995 at 266.231 kb on + strand, within RR42_RS21995 at 266.231 kb on + strand, within RR42_RS21995 at 266.232 kb on - strand, within RR42_RS21995 at 266.232 kb on - strand, within RR42_RS21995 at 266.232 kb on - strand, within RR42_RS21995 at 266.232 kb on - strand, within RR42_RS21995 at 266.461 kb on + strand, within RR42_RS21995 at 266.462 kb on - strand, within RR42_RS21995 at 266.582 kb on - strand, within RR42_RS21995 at 266.663 kb on + strand, within RR42_RS21995 at 266.663 kb on + strand, within RR42_RS21995 at 266.806 kb on - strand, within RR42_RS21995 at 267.035 kb on + strand at 267.074 kb on + strand at 267.074 kb on + strand at 267.075 kb on - strand at 267.253 kb on - strand at 267.378 kb on + strand, within RR42_RS22000 at 267.379 kb on - strand, within RR42_RS22000 at 267.438 kb on - strand, within RR42_RS22000 at 267.487 kb on - strand, within RR42_RS22000 at 267.658 kb on - strand, within RR42_RS22000 at 267.693 kb on - strand, within RR42_RS22000 at 267.693 kb on - strand, within RR42_RS22000 at 267.693 kb on - strand, within RR42_RS22000 at 267.730 kb on - strand, within RR42_RS22000 at 267.813 kb on + strand, within RR42_RS22000 at 267.814 kb on - strand, within RR42_RS22000 at 267.814 kb on - strand, within RR42_RS22000 at 267.859 kb on - strand, within RR42_RS22000 at 267.894 kb on + strand, within RR42_RS22000 at 267.894 kb on + strand, within RR42_RS22000 at 267.895 kb on - strand, within RR42_RS22000 at 267.895 kb on - strand, within RR42_RS22000 at 267.895 kb on - strand, within RR42_RS22000 at 267.895 kb on - strand, within RR42_RS22000 at 267.987 kb on + strand, within RR42_RS22000 at 267.987 kb on + strand, within RR42_RS22000 at 267.988 kb on - strand, within RR42_RS22000 at 268.089 kb on + strand, within RR42_RS22000 at 268.089 kb on + strand, within RR42_RS22000 at 268.089 kb on + strand, within RR42_RS22000 at 268.124 kb on + strand, within RR42_RS22000 at 268.133 kb on + strand, within RR42_RS22000
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 264,577 - +0.1 264,597 - -0.7 264,777 + RR42_RS21990 0.19 +0.8 264,778 - RR42_RS21990 0.19 -0.7 264,778 - RR42_RS21990 0.19 -0.0 264,778 - RR42_RS21990 0.19 +0.5 264,783 + RR42_RS21990 0.19 -0.1 264,793 + RR42_RS21990 0.20 +0.2 264,793 + RR42_RS21990 0.20 +1.1 264,793 + RR42_RS21990 0.20 -0.4 265,107 + RR42_RS21990 0.52 -0.5 265,245 + RR42_RS21990 0.66 -0.2 265,246 - RR42_RS21990 0.66 -1.2 265,273 - RR42_RS21990 0.69 +0.6 265,350 + RR42_RS21990 0.77 -0.4 265,351 - RR42_RS21990 0.77 -0.2 265,351 - RR42_RS21990 0.77 +0.8 265,351 - RR42_RS21990 0.77 +0.0 265,563 + +2.4 265,643 + +0.3 265,644 - -1.4 265,758 - RR42_RS21995 0.11 +0.8 266,022 - RR42_RS21995 0.28 +0.9 266,022 - RR42_RS21995 0.28 -0.0 266,057 + RR42_RS21995 0.30 -0.1 266,058 - RR42_RS21995 0.30 -1.2 266,058 - RR42_RS21995 0.30 -0.1 266,231 + RR42_RS21995 0.41 +0.2 266,231 + RR42_RS21995 0.41 +0.9 266,232 - RR42_RS21995 0.41 +1.6 266,232 - RR42_RS21995 0.41 -0.7 266,232 - RR42_RS21995 0.41 -0.4 266,232 - RR42_RS21995 0.41 +0.2 266,461 + RR42_RS21995 0.55 +0.1 266,462 - RR42_RS21995 0.55 +0.1 266,582 - RR42_RS21995 0.63 -0.2 266,663 + RR42_RS21995 0.68 +0.2 266,663 + RR42_RS21995 0.68 +0.0 266,806 - RR42_RS21995 0.77 +0.9 267,035 + +0.2 267,074 + +0.6 267,074 + +0.1 267,075 - +1.1 267,253 - -0.6 267,378 + RR42_RS22000 0.15 -0.6 267,379 - RR42_RS22000 0.15 -0.5 267,438 - RR42_RS22000 0.19 -1.9 267,487 - RR42_RS22000 0.23 -0.7 267,658 - RR42_RS22000 0.35 -0.2 267,693 - RR42_RS22000 0.38 +2.7 267,693 - RR42_RS22000 0.38 +0.7 267,693 - RR42_RS22000 0.38 +0.6 267,730 - RR42_RS22000 0.40 +0.7 267,813 + RR42_RS22000 0.46 +0.2 267,814 - RR42_RS22000 0.46 +0.3 267,814 - RR42_RS22000 0.46 +1.0 267,859 - RR42_RS22000 0.50 +1.8 267,894 + RR42_RS22000 0.52 +1.1 267,894 + RR42_RS22000 0.52 -1.0 267,895 - RR42_RS22000 0.52 -0.3 267,895 - RR42_RS22000 0.52 +0.4 267,895 - RR42_RS22000 0.52 +0.1 267,895 - RR42_RS22000 0.52 -0.1 267,987 + RR42_RS22000 0.59 +0.6 267,987 + RR42_RS22000 0.59 -1.7 267,988 - RR42_RS22000 0.59 +0.0 268,089 + RR42_RS22000 0.67 +0.7 268,089 + RR42_RS22000 0.67 -0.6 268,089 + RR42_RS22000 0.67 +0.6 268,124 + RR42_RS22000 0.69 +0.3 268,133 + RR42_RS22000 0.70 +0.9
Or see this region's nucleotide sequence