Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19790 and RR42_RS19795 are separated by 45 nucleotides RR42_RS19795 and RR42_RS19800 are separated by 492 nucleotides
RR42_RS19790: RR42_RS19790 - C4-dicarboxylate ABC transporter, at 4,271,154 to 4,272,575
_RS19790
RR42_RS19795: RR42_RS19795 - GntR family transcriptional regulator, at 4,272,621 to 4,273,310
_RS19795
RR42_RS19800: RR42_RS19800 - short-chain dehydrogenase, at 4,273,803 to 4,274,624
_RS19800
Position (kb)
4272
4273
4274 Strain fitness (log2 ratio)
-2
-1
0
1 at 4271.756 kb on + strand, within RR42_RS19790 at 4271.831 kb on - strand, within RR42_RS19790 at 4271.850 kb on + strand, within RR42_RS19790 at 4271.850 kb on + strand, within RR42_RS19790 at 4271.850 kb on + strand, within RR42_RS19790 at 4271.851 kb on - strand, within RR42_RS19790 at 4271.880 kb on + strand, within RR42_RS19790 at 4272.160 kb on + strand, within RR42_RS19790 at 4272.164 kb on + strand, within RR42_RS19790 at 4272.165 kb on - strand, within RR42_RS19790 at 4272.165 kb on - strand, within RR42_RS19790 at 4272.165 kb on - strand, within RR42_RS19790 at 4272.182 kb on + strand, within RR42_RS19790 at 4272.182 kb on + strand, within RR42_RS19790 at 4272.183 kb on - strand, within RR42_RS19790 at 4272.573 kb on + strand at 4272.573 kb on + strand at 4272.632 kb on + strand at 4272.632 kb on + strand at 4272.632 kb on + strand at 4272.632 kb on + strand at 4272.633 kb on - strand at 4272.744 kb on + strand, within RR42_RS19795 at 4273.119 kb on + strand, within RR42_RS19795 at 4273.119 kb on + strand, within RR42_RS19795 at 4273.119 kb on + strand, within RR42_RS19795 at 4273.534 kb on - strand at 4273.573 kb on - strand at 4273.573 kb on - strand at 4273.802 kb on + strand at 4273.803 kb on - strand at 4273.850 kb on + strand at 4273.946 kb on + strand, within RR42_RS19800 at 4274.020 kb on - strand, within RR42_RS19800 at 4274.157 kb on - strand, within RR42_RS19800 at 4274.281 kb on + strand, within RR42_RS19800 at 4274.282 kb on - strand, within RR42_RS19800
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 4,271,756 + RR42_RS19790 0.42 +0.7 4,271,831 - RR42_RS19790 0.48 +0.3 4,271,850 + RR42_RS19790 0.49 +0.9 4,271,850 + RR42_RS19790 0.49 -0.7 4,271,850 + RR42_RS19790 0.49 -0.3 4,271,851 - RR42_RS19790 0.49 -0.9 4,271,880 + RR42_RS19790 0.51 +0.1 4,272,160 + RR42_RS19790 0.71 +1.1 4,272,164 + RR42_RS19790 0.71 -1.5 4,272,165 - RR42_RS19790 0.71 +0.5 4,272,165 - RR42_RS19790 0.71 +0.0 4,272,165 - RR42_RS19790 0.71 +1.1 4,272,182 + RR42_RS19790 0.72 +1.4 4,272,182 + RR42_RS19790 0.72 +0.9 4,272,183 - RR42_RS19790 0.72 +0.8 4,272,573 + +0.3 4,272,573 + -0.3 4,272,632 + +0.3 4,272,632 + -0.3 4,272,632 + +0.1 4,272,632 + +0.8 4,272,633 - +0.5 4,272,744 + RR42_RS19795 0.18 -0.6 4,273,119 + RR42_RS19795 0.72 -1.9 4,273,119 + RR42_RS19795 0.72 -0.9 4,273,119 + RR42_RS19795 0.72 -1.1 4,273,534 - +1.6 4,273,573 - -0.2 4,273,573 - +1.4 4,273,802 + +0.0 4,273,803 - +0.9 4,273,850 + +1.2 4,273,946 + RR42_RS19800 0.17 +0.8 4,274,020 - RR42_RS19800 0.26 -0.8 4,274,157 - RR42_RS19800 0.43 +0.2 4,274,281 + RR42_RS19800 0.58 +0.3 4,274,282 - RR42_RS19800 0.58 +0.8
Or see this region's nucleotide sequence