Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19795

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19790 and RR42_RS19795 are separated by 45 nucleotidesRR42_RS19795 and RR42_RS19800 are separated by 492 nucleotides RR42_RS19790: RR42_RS19790 - C4-dicarboxylate ABC transporter, at 4,271,154 to 4,272,575 _RS19790 RR42_RS19795: RR42_RS19795 - GntR family transcriptional regulator, at 4,272,621 to 4,273,310 _RS19795 RR42_RS19800: RR42_RS19800 - short-chain dehydrogenase, at 4,273,803 to 4,274,624 _RS19800 Position (kb) 4272 4273 4274Strain fitness (log2 ratio) -2 -1 0 1at 4271.756 kb on + strand, within RR42_RS19790at 4271.831 kb on - strand, within RR42_RS19790at 4271.850 kb on + strand, within RR42_RS19790at 4271.850 kb on + strand, within RR42_RS19790at 4271.850 kb on + strand, within RR42_RS19790at 4271.851 kb on - strand, within RR42_RS19790at 4271.880 kb on + strand, within RR42_RS19790at 4272.160 kb on + strand, within RR42_RS19790at 4272.164 kb on + strand, within RR42_RS19790at 4272.165 kb on - strand, within RR42_RS19790at 4272.165 kb on - strand, within RR42_RS19790at 4272.165 kb on - strand, within RR42_RS19790at 4272.182 kb on + strand, within RR42_RS19790at 4272.182 kb on + strand, within RR42_RS19790at 4272.183 kb on - strand, within RR42_RS19790at 4272.573 kb on + strandat 4272.573 kb on + strandat 4272.632 kb on + strandat 4272.632 kb on + strandat 4272.632 kb on + strandat 4272.632 kb on + strandat 4272.633 kb on - strandat 4272.744 kb on + strand, within RR42_RS19795at 4273.119 kb on + strand, within RR42_RS19795at 4273.119 kb on + strand, within RR42_RS19795at 4273.119 kb on + strand, within RR42_RS19795at 4273.534 kb on - strandat 4273.573 kb on - strandat 4273.573 kb on - strandat 4273.802 kb on + strandat 4273.803 kb on - strandat 4273.850 kb on + strandat 4273.946 kb on + strand, within RR42_RS19800at 4274.020 kb on - strand, within RR42_RS19800at 4274.157 kb on - strand, within RR42_RS19800at 4274.281 kb on + strand, within RR42_RS19800at 4274.282 kb on - strand, within RR42_RS19800

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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4,271,756 + RR42_RS19790 0.42 +0.7
4,271,831 - RR42_RS19790 0.48 +0.3
4,271,850 + RR42_RS19790 0.49 +0.9
4,271,850 + RR42_RS19790 0.49 -0.7
4,271,850 + RR42_RS19790 0.49 -0.3
4,271,851 - RR42_RS19790 0.49 -0.9
4,271,880 + RR42_RS19790 0.51 +0.1
4,272,160 + RR42_RS19790 0.71 +1.1
4,272,164 + RR42_RS19790 0.71 -1.5
4,272,165 - RR42_RS19790 0.71 +0.5
4,272,165 - RR42_RS19790 0.71 +0.0
4,272,165 - RR42_RS19790 0.71 +1.1
4,272,182 + RR42_RS19790 0.72 +1.4
4,272,182 + RR42_RS19790 0.72 +0.9
4,272,183 - RR42_RS19790 0.72 +0.8
4,272,573 + +0.3
4,272,573 + -0.3
4,272,632 + +0.3
4,272,632 + -0.3
4,272,632 + +0.1
4,272,632 + +0.8
4,272,633 - +0.5
4,272,744 + RR42_RS19795 0.18 -0.6
4,273,119 + RR42_RS19795 0.72 -1.9
4,273,119 + RR42_RS19795 0.72 -0.9
4,273,119 + RR42_RS19795 0.72 -1.1
4,273,534 - +1.6
4,273,573 - -0.2
4,273,573 - +1.4
4,273,802 + +0.0
4,273,803 - +0.9
4,273,850 + +1.2
4,273,946 + RR42_RS19800 0.17 +0.8
4,274,020 - RR42_RS19800 0.26 -0.8
4,274,157 - RR42_RS19800 0.43 +0.2
4,274,281 + RR42_RS19800 0.58 +0.3
4,274,282 - RR42_RS19800 0.58 +0.8

Or see this region's nucleotide sequence