Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14855 and RR42_RS14860 are separated by 22 nucleotides RR42_RS14860 and RR42_RS14865 are separated by 209 nucleotides RR42_RS14865 and RR42_RS14870 are separated by 25 nucleotides
RR42_RS14855: RR42_RS14855 - monooxygenase, at 3,201,962 to 3,203,653
_RS14855
RR42_RS14860: RR42_RS14860 - hypothetical protein, at 3,203,676 to 3,203,870
_RS14860
RR42_RS14865: RR42_RS14865 - hypothetical protein, at 3,204,080 to 3,204,562
_RS14865
RR42_RS14870: RR42_RS14870 - hypothetical protein, at 3,204,588 to 3,205,784
_RS14870
Position (kb) 3204
3205 Strain fitness (log2 ratio) -1
0
1
2 at 3203.140 kb on - strand, within RR42_RS14855 at 3203.225 kb on + strand, within RR42_RS14855 at 3203.225 kb on + strand, within RR42_RS14855 at 3203.226 kb on - strand, within RR42_RS14855 at 3203.330 kb on + strand, within RR42_RS14855 at 3203.330 kb on + strand, within RR42_RS14855 at 3203.369 kb on + strand, within RR42_RS14855 at 3203.369 kb on + strand, within RR42_RS14855 at 3203.559 kb on - strand at 3203.698 kb on + strand, within RR42_RS14860 at 3203.725 kb on - strand, within RR42_RS14860 at 3203.725 kb on - strand, within RR42_RS14860 at 3203.858 kb on + strand at 3203.859 kb on - strand at 3203.868 kb on + strand at 3204.689 kb on - strand at 3205.139 kb on - strand, within RR42_RS14870 at 3205.159 kb on + strand, within RR42_RS14870 at 3205.160 kb on - strand, within RR42_RS14870 at 3205.160 kb on - strand, within RR42_RS14870 at 3205.436 kb on - strand, within RR42_RS14870 at 3205.450 kb on + strand, within RR42_RS14870 at 3205.450 kb on + strand, within RR42_RS14870 at 3205.450 kb on + strand, within RR42_RS14870 at 3205.472 kb on - strand, within RR42_RS14870 at 3205.490 kb on - strand, within RR42_RS14870 at 3205.490 kb on - strand, within RR42_RS14870 at 3205.490 kb on - strand, within RR42_RS14870 at 3205.543 kb on + strand, within RR42_RS14870 at 3205.543 kb on + strand, within RR42_RS14870 at 3205.546 kb on + strand, within RR42_RS14870 at 3205.546 kb on + strand, within RR42_RS14870 at 3205.547 kb on - strand, within RR42_RS14870 at 3205.547 kb on - strand, within RR42_RS14870 at 3205.547 kb on - strand, within RR42_RS14870 at 3205.547 kb on - strand, within RR42_RS14870 at 3205.547 kb on - strand, within RR42_RS14870
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 3,203,140 - RR42_RS14855 0.70 -0.3 3,203,225 + RR42_RS14855 0.75 -0.2 3,203,225 + RR42_RS14855 0.75 +0.4 3,203,226 - RR42_RS14855 0.75 -0.5 3,203,330 + RR42_RS14855 0.81 +0.7 3,203,330 + RR42_RS14855 0.81 -1.6 3,203,369 + RR42_RS14855 0.83 +0.4 3,203,369 + RR42_RS14855 0.83 -0.4 3,203,559 - -1.6 3,203,698 + RR42_RS14860 0.11 +1.5 3,203,725 - RR42_RS14860 0.25 -0.3 3,203,725 - RR42_RS14860 0.25 +0.7 3,203,858 + -0.9 3,203,859 - -0.5 3,203,868 + -0.1 3,204,689 - -0.1 3,205,139 - RR42_RS14870 0.46 -1.3 3,205,159 + RR42_RS14870 0.48 +0.2 3,205,160 - RR42_RS14870 0.48 -0.3 3,205,160 - RR42_RS14870 0.48 +0.2 3,205,436 - RR42_RS14870 0.71 -0.3 3,205,450 + RR42_RS14870 0.72 -0.5 3,205,450 + RR42_RS14870 0.72 -0.4 3,205,450 + RR42_RS14870 0.72 +0.0 3,205,472 - RR42_RS14870 0.74 -0.6 3,205,490 - RR42_RS14870 0.75 -1.5 3,205,490 - RR42_RS14870 0.75 +0.0 3,205,490 - RR42_RS14870 0.75 +0.7 3,205,543 + RR42_RS14870 0.80 +0.9 3,205,543 + RR42_RS14870 0.80 +1.4 3,205,546 + RR42_RS14870 0.80 +0.9 3,205,546 + RR42_RS14870 0.80 +1.9 3,205,547 - RR42_RS14870 0.80 +0.9 3,205,547 - RR42_RS14870 0.80 +0.6 3,205,547 - RR42_RS14870 0.80 -1.0 3,205,547 - RR42_RS14870 0.80 +0.7 3,205,547 - RR42_RS14870 0.80 -0.2
Or see this region's nucleotide sequence