Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05750

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05745 and RR42_RS05750 are separated by 117 nucleotidesRR42_RS05750 and RR42_RS05755 are separated by 105 nucleotidesRR42_RS05755 and RR42_RS05760 are separated by 92 nucleotides RR42_RS05745: RR42_RS05745 - aminoglycoside phosphotransferase, at 1,264,143 to 1,265,219 _RS05745 RR42_RS05750: RR42_RS05750 - fructose 2,6-bisphosphatase, at 1,265,337 to 1,266,071 _RS05750 RR42_RS05755: RR42_RS05755 - enoyl-CoA hydratase, at 1,266,177 to 1,266,956 _RS05755 RR42_RS05760: RR42_RS05760 - 3-hydroxyacyl-CoA dehydrogenase, at 1,267,049 to 1,268,572 _RS05760 Position (kb) 1265 1266 1267Strain fitness (log2 ratio) -1 0 1at 1264.348 kb on + strand, within RR42_RS05745at 1264.349 kb on - strand, within RR42_RS05745at 1264.352 kb on + strand, within RR42_RS05745at 1264.352 kb on + strand, within RR42_RS05745at 1264.353 kb on - strand, within RR42_RS05745at 1264.361 kb on - strand, within RR42_RS05745at 1264.361 kb on - strand, within RR42_RS05745at 1264.577 kb on + strand, within RR42_RS05745at 1264.577 kb on + strand, within RR42_RS05745at 1264.577 kb on + strand, within RR42_RS05745at 1264.578 kb on - strand, within RR42_RS05745at 1264.578 kb on - strand, within RR42_RS05745at 1264.601 kb on + strand, within RR42_RS05745at 1264.601 kb on + strand, within RR42_RS05745at 1264.602 kb on - strand, within RR42_RS05745at 1264.666 kb on + strand, within RR42_RS05745at 1264.666 kb on + strand, within RR42_RS05745at 1264.667 kb on - strand, within RR42_RS05745at 1264.667 kb on - strand, within RR42_RS05745at 1264.702 kb on + strand, within RR42_RS05745at 1264.702 kb on + strand, within RR42_RS05745at 1264.702 kb on + strand, within RR42_RS05745at 1264.702 kb on + strand, within RR42_RS05745at 1264.703 kb on - strand, within RR42_RS05745at 1264.744 kb on + strand, within RR42_RS05745at 1264.745 kb on - strand, within RR42_RS05745at 1264.789 kb on + strand, within RR42_RS05745at 1264.790 kb on - strand, within RR42_RS05745at 1264.790 kb on - strand, within RR42_RS05745at 1264.790 kb on - strand, within RR42_RS05745at 1264.870 kb on + strand, within RR42_RS05745at 1264.912 kb on + strand, within RR42_RS05745at 1264.912 kb on + strand, within RR42_RS05745at 1264.913 kb on - strand, within RR42_RS05745at 1264.913 kb on - strand, within RR42_RS05745at 1264.913 kb on - strand, within RR42_RS05745at 1265.032 kb on + strand, within RR42_RS05745at 1265.032 kb on + strand, within RR42_RS05745at 1265.033 kb on - strand, within RR42_RS05745at 1265.033 kb on - strand, within RR42_RS05745at 1265.266 kb on + strandat 1265.267 kb on - strandat 1265.267 kb on - strandat 1265.319 kb on + strandat 1265.319 kb on + strandat 1265.319 kb on + strandat 1265.319 kb on + strandat 1265.319 kb on + strandat 1265.319 kb on + strandat 1265.319 kb on + strandat 1265.320 kb on - strandat 1265.320 kb on - strandat 1265.320 kb on - strandat 1265.320 kb on - strandat 1265.338 kb on + strandat 1265.374 kb on + strandat 1265.375 kb on - strandat 1265.440 kb on + strand, within RR42_RS05750at 1266.010 kb on + strandat 1266.010 kb on + strandat 1266.011 kb on - strandat 1266.037 kb on + strandat 1266.038 kb on - strandat 1266.178 kb on + strandat 1266.862 kb on + strand, within RR42_RS05755at 1266.862 kb on + strand, within RR42_RS05755at 1266.863 kb on - strand, within RR42_RS05755at 1266.863 kb on - strand, within RR42_RS05755at 1267.050 kb on + strandat 1267.050 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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1,264,348 + RR42_RS05745 0.19 -0.4
1,264,349 - RR42_RS05745 0.19 +0.0
1,264,352 + RR42_RS05745 0.19 -0.4
1,264,352 + RR42_RS05745 0.19 +0.2
1,264,353 - RR42_RS05745 0.19 -0.2
1,264,361 - RR42_RS05745 0.20 -0.1
1,264,361 - RR42_RS05745 0.20 +0.5
1,264,577 + RR42_RS05745 0.40 -0.2
1,264,577 + RR42_RS05745 0.40 -0.2
1,264,577 + RR42_RS05745 0.40 +0.3
1,264,578 - RR42_RS05745 0.40 +0.2
1,264,578 - RR42_RS05745 0.40 -0.4
1,264,601 + RR42_RS05745 0.43 -1.0
1,264,601 + RR42_RS05745 0.43 +0.4
1,264,602 - RR42_RS05745 0.43 -1.1
1,264,666 + RR42_RS05745 0.49 +0.7
1,264,666 + RR42_RS05745 0.49 +0.1
1,264,667 - RR42_RS05745 0.49 +0.3
1,264,667 - RR42_RS05745 0.49 +0.9
1,264,702 + RR42_RS05745 0.52 -0.1
1,264,702 + RR42_RS05745 0.52 -0.2
1,264,702 + RR42_RS05745 0.52 +0.7
1,264,702 + RR42_RS05745 0.52 -0.9
1,264,703 - RR42_RS05745 0.52 +0.5
1,264,744 + RR42_RS05745 0.56 +0.9
1,264,745 - RR42_RS05745 0.56 +1.2
1,264,789 + RR42_RS05745 0.60 +1.0
1,264,790 - RR42_RS05745 0.60 +0.2
1,264,790 - RR42_RS05745 0.60 -0.7
1,264,790 - RR42_RS05745 0.60 +0.8
1,264,870 + RR42_RS05745 0.68 +0.1
1,264,912 + RR42_RS05745 0.71 -0.3
1,264,912 + RR42_RS05745 0.71 -0.8
1,264,913 - RR42_RS05745 0.71 +0.3
1,264,913 - RR42_RS05745 0.71 +0.2
1,264,913 - RR42_RS05745 0.71 +0.5
1,265,032 + RR42_RS05745 0.83 +0.1
1,265,032 + RR42_RS05745 0.83 -0.2
1,265,033 - RR42_RS05745 0.83 -0.5
1,265,033 - RR42_RS05745 0.83 +0.3
1,265,266 + +0.6
1,265,267 - -0.5
1,265,267 - +0.4
1,265,319 + +0.3
1,265,319 + +0.6
1,265,319 + +0.8
1,265,319 + +0.4
1,265,319 + -0.1
1,265,319 + -0.1
1,265,319 + -0.9
1,265,320 - -0.1
1,265,320 - +0.2
1,265,320 - -1.0
1,265,320 - -0.1
1,265,338 + +0.8
1,265,374 + +0.1
1,265,375 - -0.6
1,265,440 + RR42_RS05750 0.14 -1.0
1,266,010 + +0.5
1,266,010 + -0.2
1,266,011 - +0.4
1,266,037 + +0.6
1,266,038 - +0.5
1,266,178 + -1.7
1,266,862 + RR42_RS05755 0.88 +0.9
1,266,862 + RR42_RS05755 0.88 +1.7
1,266,863 - RR42_RS05755 0.88 +1.3
1,266,863 - RR42_RS05755 0.88 +1.4
1,267,050 + +0.5
1,267,050 + +0.3

Or see this region's nucleotide sequence