Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04300

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04295 and RR42_RS04300 are separated by 252 nucleotidesRR42_RS04300 and RR42_RS04305 are separated by 95 nucleotidesRR42_RS04305 and RR42_RS04310 are separated by 13 nucleotides RR42_RS04295: RR42_RS04295 - hypothetical protein, at 954,531 to 955,790 _RS04295 RR42_RS04300: RR42_RS04300 - nitrogen regulatory protein P-II 1, at 956,043 to 956,381 _RS04300 RR42_RS04305: RR42_RS04305 - membrane protein, at 956,477 to 957,118 _RS04305 RR42_RS04310: RR42_RS04310 - DNA mismatch repair protein MutS, at 957,132 to 957,836 _RS04310 Position (kb) 956 957Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 955.385 kb on - strand, within RR42_RS04295at 955.406 kb on - strand, within RR42_RS04295at 955.406 kb on - strand, within RR42_RS04295at 955.435 kb on + strand, within RR42_RS04295at 955.435 kb on + strand, within RR42_RS04295at 955.436 kb on - strand, within RR42_RS04295at 955.436 kb on - strand, within RR42_RS04295at 955.436 kb on - strand, within RR42_RS04295at 955.436 kb on - strand, within RR42_RS04295at 955.525 kb on + strand, within RR42_RS04295at 955.688 kb on - strandat 955.863 kb on + strandat 955.881 kb on + strandat 955.882 kb on - strandat 955.899 kb on + strandat 956.003 kb on + strandat 956.027 kb on + strandat 956.027 kb on + strandat 956.027 kb on + strandat 956.027 kb on + strandat 956.028 kb on - strandat 956.029 kb on + strandat 956.029 kb on + strandat 956.029 kb on + strandat 956.029 kb on + strandat 956.029 kb on + strandat 956.029 kb on + strandat 956.030 kb on - strandat 956.030 kb on - strandat 956.030 kb on - strandat 956.030 kb on - strandat 956.030 kb on - strandat 956.031 kb on + strandat 956.031 kb on + strandat 956.031 kb on + strandat 956.032 kb on - strandat 956.032 kb on - strandat 956.193 kb on + strand, within RR42_RS04300at 956.193 kb on + strand, within RR42_RS04300at 956.194 kb on - strand, within RR42_RS04300at 956.194 kb on - strand, within RR42_RS04300at 956.590 kb on + strand, within RR42_RS04305at 956.591 kb on - strand, within RR42_RS04305at 956.592 kb on + strand, within RR42_RS04305at 956.592 kb on + strand, within RR42_RS04305at 956.592 kb on + strand, within RR42_RS04305at 956.592 kb on + strand, within RR42_RS04305at 956.592 kb on + strand, within RR42_RS04305at 956.593 kb on - strand, within RR42_RS04305at 956.593 kb on - strand, within RR42_RS04305at 956.625 kb on + strand, within RR42_RS04305at 956.626 kb on - strand, within RR42_RS04305at 956.626 kb on - strand, within RR42_RS04305at 956.843 kb on + strand, within RR42_RS04305at 956.843 kb on + strand, within RR42_RS04305at 956.889 kb on + strand, within RR42_RS04305at 956.890 kb on - strand, within RR42_RS04305at 956.890 kb on - strand, within RR42_RS04305at 956.890 kb on - strand, within RR42_RS04305at 956.890 kb on - strand, within RR42_RS04305at 956.910 kb on + strand, within RR42_RS04305at 956.910 kb on + strand, within RR42_RS04305at 956.910 kb on + strand, within RR42_RS04305at 956.911 kb on - strand, within RR42_RS04305at 957.056 kb on + strandat 957.056 kb on + strandat 957.056 kb on + strandat 957.057 kb on - strandat 957.057 kb on - strandat 957.210 kb on + strand, within RR42_RS04310at 957.210 kb on + strand, within RR42_RS04310at 957.211 kb on - strand, within RR42_RS04310

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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955,385 - RR42_RS04295 0.68 -0.9
955,406 - RR42_RS04295 0.69 -0.1
955,406 - RR42_RS04295 0.69 +0.0
955,435 + RR42_RS04295 0.72 -0.3
955,435 + RR42_RS04295 0.72 +0.7
955,436 - RR42_RS04295 0.72 +1.9
955,436 - RR42_RS04295 0.72 -0.6
955,436 - RR42_RS04295 0.72 +0.9
955,436 - RR42_RS04295 0.72 +0.6
955,525 + RR42_RS04295 0.79 -0.7
955,688 - -0.0
955,863 + +1.6
955,881 + +0.1
955,882 - -0.8
955,899 + +2.0
956,003 + +0.5
956,027 + -0.6
956,027 + -0.6
956,027 + -0.3
956,027 + +0.6
956,028 - -2.0
956,029 + +0.1
956,029 + +0.3
956,029 + +0.4
956,029 + +0.4
956,029 + +0.8
956,029 + -1.0
956,030 - -0.5
956,030 - -0.9
956,030 - -1.9
956,030 - +0.1
956,030 - -1.2
956,031 + -0.8
956,031 + +0.5
956,031 + -0.6
956,032 - -0.2
956,032 - +0.0
956,193 + RR42_RS04300 0.44 -0.5
956,193 + RR42_RS04300 0.44 -0.5
956,194 - RR42_RS04300 0.45 -0.8
956,194 - RR42_RS04300 0.45 -2.9
956,590 + RR42_RS04305 0.18 +1.1
956,591 - RR42_RS04305 0.18 +0.3
956,592 + RR42_RS04305 0.18 -0.1
956,592 + RR42_RS04305 0.18 -1.0
956,592 + RR42_RS04305 0.18 +0.3
956,592 + RR42_RS04305 0.18 +0.6
956,592 + RR42_RS04305 0.18 -0.4
956,593 - RR42_RS04305 0.18 +1.3
956,593 - RR42_RS04305 0.18 +0.1
956,625 + RR42_RS04305 0.23 +1.5
956,626 - RR42_RS04305 0.23 -0.4
956,626 - RR42_RS04305 0.23 +0.5
956,843 + RR42_RS04305 0.57 -2.1
956,843 + RR42_RS04305 0.57 +0.2
956,889 + RR42_RS04305 0.64 -0.1
956,890 - RR42_RS04305 0.64 -0.6
956,890 - RR42_RS04305 0.64 +1.9
956,890 - RR42_RS04305 0.64 -0.0
956,890 - RR42_RS04305 0.64 +0.7
956,910 + RR42_RS04305 0.67 +0.1
956,910 + RR42_RS04305 0.67 +0.4
956,910 + RR42_RS04305 0.67 +0.6
956,911 - RR42_RS04305 0.68 -0.7
957,056 + +1.0
957,056 + +0.4
957,056 + +0.4
957,057 - +0.8
957,057 - -1.1
957,210 + RR42_RS04310 0.11 +0.3
957,210 + RR42_RS04310 0.11 -0.3
957,211 - RR42_RS04310 0.11 -0.6

Or see this region's nucleotide sequence