Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02925 and RR42_RS02930 are separated by 163 nucleotides RR42_RS02930 and RR42_RS02935 are separated by 9 nucleotides RR42_RS02935 and RR42_RS02940 overlap by 4 nucleotides
RR42_RS02925: RR42_RS02925 - membrane protein, at 652,034 to 652,945
_RS02925
RR42_RS02930: RR42_RS02930 - AsnC family transcriptional regulator, at 653,109 to 653,579
_RS02930
RR42_RS02935: RR42_RS02935 - malonate decarboxylase subunit epsilon, at 653,589 to 654,527
_RS02935
RR42_RS02940: RR42_RS02940 - phosphoribosyl-dephospho-CoA transferase, at 654,524 to 655,162
_RS02940
Position (kb) 653
654 Strain fitness (log2 ratio) -1
0
1 at 652.249 kb on + strand, within RR42_RS02925 at 652.249 kb on + strand, within RR42_RS02925 at 652.250 kb on - strand, within RR42_RS02925 at 652.493 kb on - strand, within RR42_RS02925 at 652.545 kb on + strand, within RR42_RS02925 at 652.545 kb on + strand, within RR42_RS02925 at 652.545 kb on + strand, within RR42_RS02925 at 652.546 kb on - strand, within RR42_RS02925 at 652.668 kb on + strand, within RR42_RS02925 at 652.668 kb on + strand, within RR42_RS02925 at 652.669 kb on - strand, within RR42_RS02925 at 652.669 kb on - strand, within RR42_RS02925 at 653.022 kb on - strand at 653.410 kb on - strand, within RR42_RS02930 at 653.553 kb on + strand at 653.853 kb on - strand, within RR42_RS02935 at 653.863 kb on + strand, within RR42_RS02935 at 653.864 kb on - strand, within RR42_RS02935 at 654.160 kb on + strand, within RR42_RS02935 at 654.172 kb on + strand, within RR42_RS02935 at 654.435 kb on + strand at 654.516 kb on + strand at 654.516 kb on + strand at 654.517 kb on - strand at 654.517 kb on - strand at 654.517 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 652,249 + RR42_RS02925 0.24 +1.5 652,249 + RR42_RS02925 0.24 +1.1 652,250 - RR42_RS02925 0.24 -0.7 652,493 - RR42_RS02925 0.50 +0.4 652,545 + RR42_RS02925 0.56 -0.4 652,545 + RR42_RS02925 0.56 -0.3 652,545 + RR42_RS02925 0.56 -0.2 652,546 - RR42_RS02925 0.56 -0.1 652,668 + RR42_RS02925 0.70 +0.4 652,668 + RR42_RS02925 0.70 +1.3 652,669 - RR42_RS02925 0.70 +0.8 652,669 - RR42_RS02925 0.70 +0.4 653,022 - +0.1 653,410 - RR42_RS02930 0.64 +0.6 653,553 + -0.0 653,853 - RR42_RS02935 0.28 +0.7 653,863 + RR42_RS02935 0.29 +0.2 653,864 - RR42_RS02935 0.29 +1.1 654,160 + RR42_RS02935 0.61 -0.3 654,172 + RR42_RS02935 0.62 -0.2 654,435 + +0.1 654,516 + -1.6 654,516 + +0.7 654,517 - -0.9 654,517 - -0.7 654,517 - +0.3
Or see this region's nucleotide sequence