Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00755 and RR42_RS00760 are separated by 251 nucleotides RR42_RS00760 and RR42_RS00765 are separated by 149 nucleotides RR42_RS00765 and RR42_RS00770 are separated by 177 nucleotides
RR42_RS00755: RR42_RS00755 - 3-oxoadipate enol-lactonase, at 189,546 to 190,388
_RS00755
RR42_RS00760: RR42_RS00760 - hypothetical protein, at 190,640 to 190,897
_RS00760
RR42_RS00765: RR42_RS00765 - sulfurtransferase, at 191,047 to 191,439
_RS00765
RR42_RS00770: RR42_RS00770 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 191,617 to 192,684
_RS00770
Position (kb) 190
191 Strain fitness (log2 ratio) -2
-1
0
1 at 189.727 kb on - strand, within RR42_RS00755 at 189.772 kb on - strand, within RR42_RS00755 at 189.772 kb on - strand, within RR42_RS00755 at 190.184 kb on + strand, within RR42_RS00755 at 190.184 kb on + strand, within RR42_RS00755 at 190.305 kb on - strand at 190.381 kb on + strand at 190.381 kb on + strand at 190.381 kb on + strand at 190.381 kb on + strand at 190.382 kb on - strand at 190.382 kb on - strand at 190.382 kb on - strand at 190.475 kb on + strand at 190.475 kb on + strand at 190.475 kb on + strand at 190.475 kb on + strand at 190.475 kb on + strand at 190.476 kb on - strand at 190.490 kb on + strand at 190.634 kb on + strand at 190.635 kb on - strand at 190.635 kb on - strand at 190.653 kb on - strand at 190.653 kb on - strand at 190.725 kb on - strand, within RR42_RS00760 at 190.864 kb on + strand, within RR42_RS00760 at 190.864 kb on + strand, within RR42_RS00760 at 190.865 kb on - strand, within RR42_RS00760 at 190.865 kb on - strand, within RR42_RS00760 at 190.895 kb on + strand at 190.896 kb on - strand at 190.896 kb on - strand at 190.964 kb on - strand at 190.998 kb on + strand at 190.998 kb on + strand at 191.051 kb on + strand at 191.051 kb on + strand at 191.052 kb on - strand at 191.052 kb on - strand at 191.052 kb on - strand at 191.094 kb on + strand, within RR42_RS00765 at 191.094 kb on + strand, within RR42_RS00765 at 191.094 kb on + strand, within RR42_RS00765 at 191.094 kb on + strand, within RR42_RS00765 at 191.095 kb on - strand, within RR42_RS00765 at 191.095 kb on - strand, within RR42_RS00765 at 191.147 kb on + strand, within RR42_RS00765 at 191.148 kb on - strand, within RR42_RS00765 at 191.351 kb on + strand, within RR42_RS00765 at 191.351 kb on + strand, within RR42_RS00765 at 191.352 kb on - strand, within RR42_RS00765 at 191.352 kb on - strand, within RR42_RS00765 at 191.352 kb on - strand, within RR42_RS00765 at 191.374 kb on + strand, within RR42_RS00765 at 191.487 kb on + strand at 191.573 kb on + strand at 191.573 kb on + strand at 191.573 kb on + strand at 191.574 kb on - strand at 191.574 kb on - strand at 191.662 kb on + strand at 191.663 kb on - strand at 191.746 kb on + strand, within RR42_RS00770 at 191.746 kb on + strand, within RR42_RS00770 at 191.747 kb on - strand, within RR42_RS00770 at 191.747 kb on - strand, within RR42_RS00770 at 191.747 kb on - strand, within RR42_RS00770 at 191.832 kb on - strand, within RR42_RS00770 at 191.869 kb on + strand, within RR42_RS00770 at 191.870 kb on - strand, within RR42_RS00770
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 189,727 - RR42_RS00755 0.21 +0.7 189,772 - RR42_RS00755 0.27 +0.2 189,772 - RR42_RS00755 0.27 +0.7 190,184 + RR42_RS00755 0.76 +1.3 190,184 + RR42_RS00755 0.76 -1.1 190,305 - -0.1 190,381 + -2.2 190,381 + -0.7 190,381 + +0.3 190,381 + -0.6 190,382 - +0.9 190,382 - -0.3 190,382 - +0.8 190,475 + -0.5 190,475 + +1.1 190,475 + +0.8 190,475 + -1.5 190,475 + +0.3 190,476 - +0.2 190,490 + -0.3 190,634 + +0.7 190,635 - +0.6 190,635 - +0.9 190,653 - +0.0 190,653 - -0.9 190,725 - RR42_RS00760 0.33 -1.3 190,864 + RR42_RS00760 0.87 -2.4 190,864 + RR42_RS00760 0.87 -0.3 190,865 - RR42_RS00760 0.87 -1.3 190,865 - RR42_RS00760 0.87 -1.7 190,895 + +0.2 190,896 - +0.0 190,896 - +0.4 190,964 - +0.3 190,998 + -0.3 190,998 + +0.8 191,051 + -1.2 191,051 + +0.0 191,052 - -0.4 191,052 - +0.0 191,052 - -0.9 191,094 + RR42_RS00765 0.12 +1.0 191,094 + RR42_RS00765 0.12 +1.3 191,094 + RR42_RS00765 0.12 +0.7 191,094 + RR42_RS00765 0.12 -1.1 191,095 - RR42_RS00765 0.12 +0.4 191,095 - RR42_RS00765 0.12 +1.3 191,147 + RR42_RS00765 0.25 +0.4 191,148 - RR42_RS00765 0.26 -1.2 191,351 + RR42_RS00765 0.77 +0.2 191,351 + RR42_RS00765 0.77 +0.1 191,352 - RR42_RS00765 0.78 +0.3 191,352 - RR42_RS00765 0.78 +0.5 191,352 - RR42_RS00765 0.78 +0.3 191,374 + RR42_RS00765 0.83 -0.5 191,487 + -0.6 191,573 + -0.2 191,573 + -0.9 191,573 + +0.8 191,574 - +0.2 191,574 - -0.1 191,662 + +0.2 191,663 - +0.0 191,746 + RR42_RS00770 0.12 +0.7 191,746 + RR42_RS00770 0.12 +0.3 191,747 - RR42_RS00770 0.12 +0.1 191,747 - RR42_RS00770 0.12 +0.2 191,747 - RR42_RS00770 0.12 -0.5 191,832 - RR42_RS00770 0.20 +0.5 191,869 + RR42_RS00770 0.24 +0.4 191,870 - RR42_RS00770 0.24 +1.0
Or see this region's nucleotide sequence