Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5084

Experiment: apoplastic, grinding recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, grinding recovery; Green bean
6,028,490	+		Psyr_5083	0.14	-1.8
6,028,490	+		Psyr_5083	0.14	+0.2
6,028,490	+		Psyr_5083	0.14	-1.4
6,028,490	+		Psyr_5083	0.14	-1.9
6,028,490	+		Psyr_5083	0.14	+1.1
6,028,490	+		Psyr_5083	0.14	+1.9
6,028,491	-		Psyr_5083	0.14	+1.2
6,028,491	-		Psyr_5083	0.14	-2.7
6,028,512	-		Psyr_5083	0.16	+1.3
6,028,523	+		Psyr_5083	0.17	-0.5
6,028,523	+		Psyr_5083	0.17	-0.3
6,028,523	+		Psyr_5083	0.17	+1.3
6,028,523	+		Psyr_5083	0.17	+1.6
6,028,523	+		Psyr_5083	0.17	-0.3
6,028,523	+		Psyr_5083	0.17	+1.3
6,028,523	+		Psyr_5083	0.17	+0.3
6,028,524	-		Psyr_5083	0.17	-0.5
6,028,524	-		Psyr_5083	0.17	-0.1
6,028,524	-		Psyr_5083	0.17	+1.4
6,028,524	-		Psyr_5083	0.17	-0.3
6,028,524	-		Psyr_5083	0.17	-2.3
6,028,578	+		Psyr_5083	0.22	-0.4
6,028,578	+		Psyr_5083	0.22	+0.9
6,028,579	-		Psyr_5083	0.22	-0.6
6,028,704	+		Psyr_5083	0.34	-2.3
6,028,828	-		Psyr_5083	0.46	+1.2
6,028,949	-		Psyr_5083	0.58	-1.3
6,028,949	-		Psyr_5083	0.58	-0.1
6,029,006	+		Psyr_5083	0.63	+1.4
6,029,006	+		Psyr_5083	0.63	-0.5
6,029,006	+		Psyr_5083	0.63	-1.3
6,029,006	+		Psyr_5083	0.63	-0.0
6,029,006	+		Psyr_5083	0.63	-1.9
6,029,006	+		Psyr_5083	0.63	+0.6
6,029,006	+		Psyr_5083	0.63	-1.7
6,029,006	+		Psyr_5083	0.63	+1.0
6,029,007	-		Psyr_5083	0.63	-0.8
6,029,007	-		Psyr_5083	0.63	-0.3
6,029,070	+		Psyr_5083	0.70	+0.1
6,029,071	-		Psyr_5083	0.70	-1.6
6,029,071	-		Psyr_5083	0.70	-3.4
6,029,344	-				+1.6
6,029,448	-				-0.1
6,029,448	-				+1.0
6,029,448	-				+1.5
6,029,542	+				-0.3
6,029,543	-				-1.5
6,029,543	-				-1.4
6,029,578	+				-2.5
6,029,579	-				-0.7
6,029,770	+		Psyr_5084	0.19	-2.4
6,029,998	+		Psyr_5084	0.31	-2.8
6,029,998	+		Psyr_5084	0.31	+0.2
6,029,998	+		Psyr_5084	0.31	-1.4
6,029,998	+		Psyr_5084	0.31	-0.9
6,029,998	+		Psyr_5084	0.31	-0.0
6,029,998	+		Psyr_5084	0.31	-0.6
6,029,999	-		Psyr_5084	0.31	+0.2
6,029,999	-		Psyr_5084	0.31	-0.3
6,029,999	-		Psyr_5084	0.31	-1.7
6,029,999	-		Psyr_5084	0.31	-0.6
6,029,999	-		Psyr_5084	0.31	+1.3
6,029,999	-		Psyr_5084	0.31	-1.3
6,030,040	+		Psyr_5084	0.33	-0.1
6,030,126	-		Psyr_5084	0.37	-0.2
6,030,306	+		Psyr_5084	0.47	-2.1
6,030,306	+		Psyr_5084	0.47	+0.7
6,030,307	-		Psyr_5084	0.47	-0.2
6,030,307	-		Psyr_5084	0.47	-3.4
6,030,307	-		Psyr_5084	0.47	-1.6
6,030,334	+		Psyr_5084	0.48	-3.2
6,030,334	+		Psyr_5084	0.48	-0.4
6,030,335	-		Psyr_5084	0.48	+1.1
6,030,335	-		Psyr_5084	0.48	-1.4
6,030,335	-		Psyr_5084	0.48	-1.0
6,030,433	+		Psyr_5084	0.53	+0.1
6,030,433	+		Psyr_5084	0.53	-1.5
6,030,433	+		Psyr_5084	0.53	-3.0
6,030,433	+		Psyr_5084	0.53	+0.3
6,030,433	+		Psyr_5084	0.53	+1.3
6,030,434	-		Psyr_5084	0.53	+1.7
6,030,434	-		Psyr_5084	0.53	-0.8
6,030,434	-		Psyr_5084	0.53	+1.7
6,030,434	-		Psyr_5084	0.53	-1.2
6,030,434	-		Psyr_5084	0.53	+0.3
6,030,434	-		Psyr_5084	0.53	-2.6
6,030,434	-		Psyr_5084	0.53	-0.8
6,030,434	-		Psyr_5084	0.53	-0.6
6,030,434	-		Psyr_5084	0.53	-3.8
6,030,434	-		Psyr_5084	0.53	+0.1
6,030,434	-		Psyr_5084	0.53	-1.6
6,030,434	-		Psyr_5084	0.53	-1.6
6,030,437	+		Psyr_5084	0.53	-1.8
6,030,437	+		Psyr_5084	0.53	+0.7
6,030,437	+		Psyr_5084	0.53	-0.1
6,030,437	+		Psyr_5084	0.53	-0.3
6,030,438	-		Psyr_5084	0.53	+1.5
6,030,438	-		Psyr_5084	0.53	-0.6
6,031,058	+		Psyr_5084	0.85	+0.7
6,031,058	+		Psyr_5084	0.85	-0.7
6,031,058	+		Psyr_5084	0.85	-1.4
6,031,058	+		Psyr_5084	0.85	-0.1
6,031,058	+		Psyr_5084	0.85	-0.8
6,031,059	-		Psyr_5084	0.85	+1.3
6,031,059	-		Psyr_5084	0.85	-1.1
6,031,059	-		Psyr_5084	0.85	-4.3
6,031,059	-		Psyr_5084	0.85	-0.3
6,031,249	+				-1.8
6,031,249	+				+1.5
6,031,249	+				+0.4
6,031,249	+				+1.7
6,031,249	+				+1.8
6,031,249	+				-2.9
6,031,249	+				-1.1
6,031,249	+				+1.7
6,031,249	+				-2.5
6,031,249	+				+0.5
6,031,249	+				+1.0
6,031,249	+				-0.0
6,031,249	+				-1.6
6,031,249	+				+1.2
6,031,249	+				-0.7
6,031,249	+				+1.3
6,031,249	+				+2.6
6,031,249	+				-1.3
6,031,249	+				+0.3
6,031,249	+				-0.6
6,031,249	+				-2.2
6,031,249	+				-1.7
6,031,249	+				-0.1
6,031,249	+				-3.0
6,031,249	+				-0.7
6,031,249	+				-1.4
6,031,249	+				+0.9
6,031,250	-				-1.4
6,031,250	-				-0.6
6,031,250	-				-2.4
6,031,250	-				-2.0
6,031,250	-				-0.4
6,031,250	-				+0.5
6,031,250	-				+0.5
6,031,250	-				+1.6
6,031,250	-				-0.3
6,031,250	-				+0.4
6,031,250	-				+0.7
6,031,250	-				-3.0
6,031,250	-				-0.7
6,031,250	-				-2.0
6,031,250	-				+1.9
6,031,250	-				+1.4
6,031,250	-				-0.6
6,031,250	-				+0.0
6,031,250	-				-0.5
6,031,250	-				-3.6
6,031,250	-				+0.1
6,031,250	-				+1.3
6,031,250	-				+0.2
6,031,250	-				+0.2
6,031,250	-				+0.5
6,031,250	-				+1.1
6,031,348	-				-0.4
6,031,363	+				+1.7
6,031,363	+				+1.2
6,031,363	+				-1.8
6,031,363	+				+0.4
6,031,363	+				+1.0
6,031,363	+				+0.2
6,031,364	-				-2.2
6,031,364	-				+0.9
6,031,364	-				-0.5
6,031,367	+				-1.0
6,031,430	-				+0.7
6,031,459	+				+0.3
6,031,459	+				-0.2
6,031,459	+				-3.7
6,031,459	+				+0.3
6,031,459	+				+1.4
6,031,459	+				-3.0
6,031,459	+				-2.7
6,031,460	-				+2.2
6,031,460	-				+0.2
6,031,462	+				-0.0
6,031,462	+				+0.6
6,031,462	+				-3.5
6,031,662	+				-1.2
6,031,675	+				+0.6
6,031,676	-				+0.8
6,031,700	+				-0.8
6,031,700	+				-1.6
6,031,701	-				+2.6
6,031,701	-				-1.6
6,031,765	+				-1.6
6,031,765	+				-1.7
6,031,765	+				-0.6
6,031,765	+				-1.3
6,031,766	-				+2.1
6,031,766	-				+1.5
6,031,780	-				-2.1
6,031,780	-				-0.3
6,031,792	+				+1.8
6,031,792	+				+0.1
6,031,793	-				+3.2
6,031,793	-				+0.5
6,031,851	+				-1.8
6,031,851	+				-0.5
6,031,851	+				+0.7
6,031,851	+				-3.0
6,031,852	-				+0.3
6,031,852	-				-2.4
6,031,852	-				+0.7
6,031,870	+				-2.7
6,031,870	+				+1.9
6,031,871	-				-0.0
6,031,871	-				-0.2
6,031,916	+				-2.7
6,032,042	+		Psyr_5085	0.11	-0.3
6,032,042	+		Psyr_5085	0.11	-0.6
6,032,042	+		Psyr_5085	0.11	+0.2
6,032,042	+		Psyr_5085	0.11	+0.5
6,032,042	+		Psyr_5085	0.11	+1.5
6,032,043	-		Psyr_5085	0.11	+0.6
6,032,043	-		Psyr_5085	0.11	-1.0
6,032,043	-		Psyr_5085	0.11	-2.9
6,032,210	+		Psyr_5085	0.21	-1.8
6,032,210	+		Psyr_5085	0.21	-0.7
6,032,210	+		Psyr_5085	0.21	-0.7
6,032,210	+		Psyr_5085	0.21	-1.3
6,032,210	+		Psyr_5085	0.21	-3.5
6,032,210	+		Psyr_5085	0.21	+1.0
6,032,210	+		Psyr_5085	0.21	+1.2
6,032,210	+		Psyr_5085	0.21	-3.3
6,032,210	+		Psyr_5085	0.21	+0.7
6,032,210	+		Psyr_5085	0.21	-1.6
6,032,210	+		Psyr_5085	0.21	-1.4
6,032,210	+		Psyr_5085	0.21	-1.8
6,032,210	+		Psyr_5085	0.21	-0.5
6,032,210	+		Psyr_5085	0.21	-2.8
6,032,210	+		Psyr_5085	0.21	+1.7
6,032,210	+		Psyr_5085	0.21	+0.8
6,032,210	+		Psyr_5085	0.21	+0.2
6,032,211	-		Psyr_5085	0.21	-0.2
6,032,211	-		Psyr_5085	0.21	-0.8
6,032,211	-		Psyr_5085	0.21	+0.4
6,032,211	-		Psyr_5085	0.21	+0.0
6,032,211	-		Psyr_5085	0.21	+1.4
6,032,211	-		Psyr_5085	0.21	+1.4
6,032,211	-		Psyr_5085	0.21	-3.2
6,032,211	-		Psyr_5085	0.21	-2.0
6,032,211	-		Psyr_5085	0.21	+1.6
6,032,211	-		Psyr_5085	0.21	-1.3
6,032,211	-		Psyr_5085	0.21	-0.5
6,032,211	-		Psyr_5085	0.21	+2.7
6,032,211	-		Psyr_5085	0.21	+1.2
6,032,211	-		Psyr_5085	0.21	-0.6
6,032,273	+		Psyr_5085	0.25	-1.6
6,032,273	+		Psyr_5085	0.25	+0.3
6,032,274	-		Psyr_5085	0.25	+1.4