Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4275

Experiment: apoplastic, grinding recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, grinding recovery; Green bean
5,098,606	+		Psyr_4273	0.88	+2.1
5,098,606	+		Psyr_4273	0.88	-2.6
5,098,606	+		Psyr_4273	0.88	-0.5
5,098,606	+		Psyr_4273	0.88	-0.8
5,098,606	+		Psyr_4273	0.88	-0.5
5,098,607	-		Psyr_4273	0.88	-2.0
5,098,607	-		Psyr_4273	0.88	-1.2
5,098,607	-		Psyr_4273	0.88	-1.2
5,098,607	-		Psyr_4273	0.88	-1.9
5,098,607	-		Psyr_4273	0.88	+2.3
5,098,607	-		Psyr_4273	0.88	+1.2
5,098,607	-		Psyr_4273	0.88	+1.7
5,098,607	-		Psyr_4273	0.88	-1.9
5,098,690	+				-0.6
5,098,690	+				-0.6
5,098,690	+				+0.0
5,098,690	+				-2.9
5,098,690	+				-3.4
5,098,690	+				-1.0
5,098,690	+				-3.4
5,098,691	-				-0.5
5,098,691	-				-1.7
5,098,691	-				+2.9
5,098,691	-				-1.6
5,098,691	-				+2.6
5,098,711	+				-1.4
5,098,711	+				-1.1
5,098,711	+				+0.4
5,098,711	+				-1.1
5,098,711	+				-3.0
5,098,711	+				-1.0
5,098,711	+				+1.5
5,098,711	+				-0.4
5,098,712	-				+0.2
5,098,712	-				+1.6
5,098,712	-				-1.6
5,098,712	-				+0.7
5,098,712	-				+1.2
5,098,712	-				-0.7
5,098,712	-				+0.2
5,098,712	-				-1.7
5,098,712	-				-0.8
5,098,712	-				+0.3
5,098,712	-				+0.0
5,098,715	+				+1.6
5,098,715	+				-0.9
5,098,715	+				+0.1
5,098,715	+				+1.6
5,098,715	+				-3.1
5,098,715	+				-3.3
5,098,715	+				+2.1
5,098,715	+				-0.8
5,098,715	+				+0.6
5,098,715	+				-1.0
5,098,715	+				+0.4
5,098,716	-				-0.9
5,098,716	-				-0.4
5,098,716	-				-0.4
5,098,716	-				-2.8
5,098,716	-				+1.0
5,098,716	-				+1.3
5,098,716	-				-0.2
5,098,716	-				+0.8
5,098,716	-				-0.4
5,098,716	-				+0.3
5,098,716	-				+1.8
5,098,716	-				-2.1
5,098,716	-				+1.6
5,098,716	-				+0.7
5,098,716	-				-0.7
5,098,716	-				+1.1
5,098,719	+				-1.2
5,098,720	-				-2.0
5,098,839	-				+2.3
5,098,839	-				+0.1
5,098,841	+				+1.6
5,098,841	+				-2.2
5,098,844	+				-0.5
5,098,844	+				-1.2
5,098,877	+				-1.9
5,098,877	+				-0.2
5,098,877	+				-0.7
5,098,877	+				-3.1
5,098,877	+				+1.6
5,098,878	-				-0.4
5,098,938	+				+0.2
5,098,938	+				+1.4
5,098,938	+				+0.6
5,098,939	-				+1.2
5,098,976	+				-0.2
5,099,042	+				-0.9
5,099,042	+				+1.5
5,099,058	+				+0.9
5,099,059	-				+0.2
5,099,088	+				-2.9
5,099,339	+		Psyr_4274	0.54	-1.5
5,099,339	+		Psyr_4274	0.54	-1.9
5,099,339	+		Psyr_4274	0.54	-3.4
5,099,339	+		Psyr_4274	0.54	-0.1
5,099,339	+		Psyr_4274	0.54	+3.3
5,099,339	+		Psyr_4274	0.54	-0.9
5,099,339	+		Psyr_4274	0.54	-1.3
5,099,339	+		Psyr_4274	0.54	-1.7
5,099,339	+		Psyr_4274	0.54	-0.4
5,099,339	+		Psyr_4274	0.54	+0.0
5,099,339	+		Psyr_4274	0.54	-2.5
5,099,339	+		Psyr_4274	0.54	-2.1
5,099,339	+		Psyr_4274	0.54	-1.4
5,099,339	+		Psyr_4274	0.54	+0.9
5,099,339	+		Psyr_4274	0.54	-3.5
5,099,339	+		Psyr_4274	0.54	+0.4
5,099,340	-		Psyr_4274	0.55	-0.7
5,099,340	-		Psyr_4274	0.55	+2.0
5,099,340	-		Psyr_4274	0.55	-3.2
5,099,340	-		Psyr_4274	0.55	-0.9
5,099,340	-		Psyr_4274	0.55	-0.7
5,099,340	-		Psyr_4274	0.55	+2.5
5,099,340	-		Psyr_4274	0.55	-0.0
5,099,340	-		Psyr_4274	0.55	+0.6
5,099,340	-		Psyr_4274	0.55	+1.8
5,099,340	-		Psyr_4274	0.55	+1.9
5,099,340	-		Psyr_4274	0.55	-1.1
5,099,340	-		Psyr_4274	0.55	+1.4
5,099,514	+				-1.1
5,099,514	+				+1.3
5,099,907	-		Psyr_4275	0.29	-1.7
5,100,009	-		Psyr_4275	0.36	-1.9
5,100,168	+		Psyr_4275	0.48	-1.7
5,100,168	+		Psyr_4275	0.48	-0.9
5,100,168	+		Psyr_4275	0.48	-2.4
5,100,168	+		Psyr_4275	0.48	-2.7
5,100,169	-		Psyr_4275	0.48	+0.7
5,100,169	-		Psyr_4275	0.48	-0.3
5,100,513	+		Psyr_4275	0.73	+0.8
5,100,513	+		Psyr_4275	0.73	-0.5
5,100,513	+		Psyr_4275	0.73	-3.1
5,100,513	+		Psyr_4275	0.73	+1.1
5,100,513	+		Psyr_4275	0.73	+1.8
5,100,513	+		Psyr_4275	0.73	-0.2
5,100,513	+		Psyr_4275	0.73	-2.2
5,100,513	+		Psyr_4275	0.73	+2.9
5,100,514	-		Psyr_4275	0.73	+0.7
5,100,514	-		Psyr_4275	0.73	-1.7
5,100,514	-		Psyr_4275	0.73	+0.6
5,100,514	-		Psyr_4275	0.73	+0.7
5,100,514	-		Psyr_4275	0.73	-2.9
5,100,514	-		Psyr_4275	0.73	-1.2
5,100,514	-		Psyr_4275	0.73	-3.8
5,100,514	-		Psyr_4275	0.73	-1.4
5,100,514	-		Psyr_4275	0.73	+0.0
5,100,514	-		Psyr_4275	0.73	+0.6
5,100,514	-		Psyr_4275	0.73	-2.2
5,100,858	+				-3.1
5,100,859	-				+0.2
5,100,859	-				+0.1
5,100,859	-				-0.7
5,100,977	-				-2.0
5,100,977	-				-3.0
5,101,022	+				-0.4
5,101,022	+				-1.0
5,101,022	+				+1.9
5,101,022	+				+0.5
5,101,023	+				-2.0
5,101,023	-				+2.0
5,101,023	-				+1.3
5,101,033	+				-0.7
5,101,054	+				+2.8
5,101,055	-				+1.4
5,101,061	+				-0.0
5,101,061	+				+1.3
5,101,062	-				+0.0
5,101,071	+				+0.8
5,101,071	+				+0.8
5,101,071	+				+1.2
5,101,123	+		Psyr_4276	0.10	-2.7
5,101,123	+		Psyr_4276	0.10	-3.1
5,101,123	+		Psyr_4276	0.10	+1.7
5,101,123	+		Psyr_4276	0.10	-2.9
5,101,123	+		Psyr_4276	0.10	-1.4
5,101,123	+		Psyr_4276	0.10	+0.0
5,101,123	+		Psyr_4276	0.10	-2.0
5,101,123	+		Psyr_4276	0.10	-0.4
5,101,123	+		Psyr_4276	0.10	-0.6
5,101,123	+		Psyr_4276	0.10	-1.9
5,101,123	+		Psyr_4276	0.10	+3.0
5,101,123	+		Psyr_4276	0.10	-1.1
5,101,124	-		Psyr_4276	0.11	-1.9
5,101,124	-		Psyr_4276	0.11	+1.1
5,101,124	-		Psyr_4276	0.11	+1.5
5,101,124	-		Psyr_4276	0.11	-2.2
5,101,124	-		Psyr_4276	0.11	+2.4
5,101,124	-		Psyr_4276	0.11	+0.2
5,101,124	-		Psyr_4276	0.11	-1.9
5,101,124	-		Psyr_4276	0.11	+2.3
5,101,124	-		Psyr_4276	0.11	-1.7
5,101,124	-		Psyr_4276	0.11	+1.1
5,101,124	-		Psyr_4276	0.11	-0.6
5,101,124	-		Psyr_4276	0.11	-0.2
5,101,142	+		Psyr_4276	0.15	-0.7
5,101,143	-		Psyr_4276	0.15	+1.0
5,101,145	+		Psyr_4276	0.15	-1.7
5,101,145	+		Psyr_4276	0.15	+0.6
5,101,146	-		Psyr_4276	0.15	-1.6
5,101,351	+		Psyr_4276	0.61	+0.7
5,101,351	+		Psyr_4276	0.61	-1.7
5,101,352	-		Psyr_4276	0.62	+1.0
5,101,515	-				+0.9
5,101,660	+				-1.2
5,101,660	+				+3.2
5,101,668	+				+0.6
5,101,721	+				+3.4
5,101,721	+				+0.6
5,101,721	+				+1.5
5,101,721	+				+0.9
5,101,721	+				+1.0
5,101,721	+				-0.5
5,101,721	+				-0.8
5,101,721	+				+0.5
5,101,721	+				+0.3
5,101,721	+				-0.7
5,101,721	+				-0.1
5,101,722	-				-0.2
5,101,722	-				-0.0