Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3845

Experiment: apoplastic, grinding recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, grinding recovery; Green bean
4,582,724	+				+1.5
4,582,725	-				-2.3
4,582,725	-				+0.5
4,582,725	-				-1.0
4,582,728	+				+0.4
4,582,728	+				-0.9
4,582,729	-				+0.4
4,582,729	-				+1.6
4,582,736	+				-2.1
4,582,736	+				+1.5
4,582,736	+				-0.1
4,582,736	+				+1.2
4,582,736	+				-0.1
4,582,736	+				+0.8
4,582,736	+				-2.6
4,582,736	+				-1.5
4,582,736	+				-0.1
4,582,736	+				-0.3
4,582,737	-				+2.1
4,582,737	-				-2.0
4,582,737	-				+1.1
4,582,737	-				-0.1
4,582,737	-				+0.5
4,582,737	-				-0.7
4,582,737	-				+1.2
4,582,737	-				-0.9
4,582,737	-				-0.5
4,582,737	-				-0.0
4,582,738	+				+0.2
4,582,738	+				+0.7
4,582,738	+				+1.5
4,582,738	+				-2.4
4,582,738	+				-2.5
4,582,738	+				+2.4
4,582,738	+				-1.3
4,582,738	+				+0.1
4,582,738	+				-0.5
4,582,738	+				-0.1
4,582,739	-				-2.6
4,582,739	-				-1.3
4,582,739	-				-2.6
4,582,739	-				-0.4
4,582,739	-				+0.4
4,582,739	-				+0.5
4,582,739	-				-0.7
4,582,739	-				-1.2
4,582,739	-				+0.9
4,582,739	-				-0.7
4,583,039	+				-0.8
4,583,133	-		Psyr_3844	0.14	-0.1
4,583,135	+		Psyr_3844	0.15	-1.4
4,583,135	+		Psyr_3844	0.15	-1.2
4,583,135	+		Psyr_3844	0.15	-0.5
4,583,136	-		Psyr_3844	0.15	-3.4
4,583,136	-		Psyr_3844	0.15	-1.8
4,583,371	-				-2.8
4,583,371	-				-0.5
4,583,380	+				+1.1
4,583,380	+				+2.7
4,583,380	+				-4.0
4,583,381	-				+0.5
4,583,429	-				-0.1
4,583,489	+				-0.9
4,583,490	-				-0.5
4,583,628	+				-2.2
4,583,690	+				+1.3
4,583,690	+				-1.1
4,583,691	-				-0.3
4,583,691	-				-0.5
4,583,692	+				+0.1
4,583,692	+				+0.8
4,583,693	-				+1.5
4,583,700	-				+1.1
4,583,700	-				+1.3
4,583,738	+				+0.7
4,583,739	-				-1.9
4,583,917	+		Psyr_3845	0.17	+5.7
4,583,917	+		Psyr_3845	0.17	-1.5
4,583,917	+		Psyr_3845	0.17	+0.4
4,583,917	+		Psyr_3845	0.17	+1.5
4,583,918	-		Psyr_3845	0.18	+2.9
4,583,918	-		Psyr_3845	0.18	+0.8
4,583,918	-		Psyr_3845	0.18	+1.2
4,583,947	-		Psyr_3845	0.20	-1.3
4,583,947	-		Psyr_3845	0.20	+0.9
4,583,947	-		Psyr_3845	0.20	-0.3
4,583,947	-		Psyr_3845	0.20	-0.4
4,583,947	-		Psyr_3845	0.20	+2.1
4,584,015	+		Psyr_3845	0.26	+1.3
4,584,015	+		Psyr_3845	0.26	-2.9
4,584,016	-		Psyr_3845	0.26	+3.4
4,584,016	-		Psyr_3845	0.26	-1.3
4,584,038	+		Psyr_3845	0.28	-0.1
4,584,038	+		Psyr_3845	0.28	-3.7
4,584,039	-		Psyr_3845	0.28	+2.5
4,584,132	+		Psyr_3845	0.37	+1.0
4,584,133	-		Psyr_3845	0.37	-1.5
4,584,192	+		Psyr_3845	0.42	-2.9
4,584,192	+		Psyr_3845	0.42	-1.8
4,584,192	+		Psyr_3845	0.42	-0.0
4,584,192	+		Psyr_3845	0.42	-0.4
4,584,192	+		Psyr_3845	0.42	-0.8
4,584,192	+		Psyr_3845	0.42	+1.2
4,584,193	-		Psyr_3845	0.42	+0.2
4,584,193	-		Psyr_3845	0.42	+1.0
4,584,193	-		Psyr_3845	0.42	-0.5
4,584,193	-		Psyr_3845	0.42	+0.6
4,584,193	-		Psyr_3845	0.42	+1.2
4,584,193	-		Psyr_3845	0.42	+0.8
4,584,193	-		Psyr_3845	0.42	+1.1
4,584,193	-		Psyr_3845	0.42	+3.2
4,584,193	-		Psyr_3845	0.42	+0.2
4,584,193	-		Psyr_3845	0.42	-1.3
4,584,193	-		Psyr_3845	0.42	+2.2
4,584,249	+		Psyr_3845	0.47	+0.8
4,584,261	-		Psyr_3845	0.48	+0.6
4,584,394	-		Psyr_3845	0.60	-1.5
4,584,396	+		Psyr_3845	0.60	-0.1
4,584,397	-		Psyr_3845	0.60	+0.8
4,584,397	-		Psyr_3845	0.60	-0.8
4,584,843	+				-0.3
4,584,843	+				-1.3
4,584,844	-				+0.1
4,584,844	-				-1.6
4,584,844	-				+1.3
4,584,939	+				+1.8
4,584,939	+				-1.8
4,584,939	+				+1.8
4,584,939	+				-2.8
4,584,939	+				+1.0
4,584,939	+				-0.4
4,584,939	+				+1.9
4,584,939	+				+1.5
4,584,939	+				-0.1
4,584,939	+				+0.5
4,584,939	+				+1.0
4,584,939	+				-3.3
4,584,939	+				+1.0
4,584,940	-				+0.2
4,584,940	-				+0.2
4,584,940	-				+0.3
4,584,940	-				-0.1
4,585,003	+				+2.2
4,585,059	+				+0.3
4,585,060	-				+0.5
4,585,060	-				-2.0
4,585,083	+				+0.0
4,585,084	-				-2.0
4,585,091	+				-1.7
4,585,091	+				-0.9
4,585,091	+				-3.0
4,585,091	+				+0.1
4,585,091	+				+3.2
4,585,091	+				-0.9
4,585,091	+				-2.1
4,585,092	-				+0.8
4,585,092	-				+1.4
4,585,092	-				+1.4
4,585,129	+				-2.4
4,585,129	+				+0.3
4,585,129	+				-1.7
4,585,130	-				-2.7
4,585,130	-				+0.6
4,585,130	-				-0.8
4,585,130	-				+0.6
4,585,133	+				+0.5
4,585,133	+				+2.7
4,585,133	+				-0.8
4,585,133	+				-1.7
4,585,133	+				-3.0
4,585,133	+				-3.3
4,585,133	+				+0.2
4,585,133	+				+1.7
4,585,133	+				+1.8
4,585,134	-				-0.7
4,585,134	-				-1.7
4,585,134	-				-2.4
4,585,134	-				+0.4
4,585,134	-				+0.2
4,585,134	-				+1.5
4,585,134	-				-1.7
4,585,134	-				-1.3
4,585,134	-				-1.3
4,585,134	-				-0.5
4,585,134	-				+1.3
4,585,134	-				-0.0
4,585,134	-				+0.2
4,585,134	-				-0.3
4,585,154	+				-0.4
4,585,155	-				-1.6
4,585,166	+		Psyr_3846	0.10	-1.5
4,585,166	+		Psyr_3846	0.10	-2.3
4,585,167	-		Psyr_3846	0.10	+0.4
4,585,208	+		Psyr_3846	0.15	+1.4
4,585,208	+		Psyr_3846	0.15	-1.3
4,585,208	+		Psyr_3846	0.15	-3.5
4,585,208	+		Psyr_3846	0.15	+0.7
4,585,208	+		Psyr_3846	0.15	+2.2
4,585,208	+		Psyr_3846	0.15	+0.2
4,585,208	+		Psyr_3846	0.15	-1.7
4,585,208	+		Psyr_3846	0.15	-0.2
4,585,208	+		Psyr_3846	0.15	+0.2
4,585,208	+		Psyr_3846	0.15	+0.4
4,585,208	+		Psyr_3846	0.15	-2.5
4,585,208	+		Psyr_3846	0.15	-0.2
4,585,208	+		Psyr_3846	0.15	-0.1
4,585,208	+		Psyr_3846	0.15	-0.5
4,585,208	+		Psyr_3846	0.15	-1.1
4,585,209	-		Psyr_3846	0.15	-0.5
4,585,209	-		Psyr_3846	0.15	-0.4
4,585,209	-		Psyr_3846	0.15	+1.2
4,585,209	-		Psyr_3846	0.15	+1.3
4,585,209	-		Psyr_3846	0.15	-1.1
4,585,209	-		Psyr_3846	0.15	+1.1
4,585,209	-		Psyr_3846	0.15	-2.2
4,585,209	-		Psyr_3846	0.15	-3.4
4,585,209	-		Psyr_3846	0.15	-0.1
4,585,209	-		Psyr_3846	0.15	+0.2
4,585,223	+		Psyr_3846	0.16	+0.5
4,585,223	+		Psyr_3846	0.16	-0.2
4,585,223	+		Psyr_3846	0.16	-0.2
4,585,223	+		Psyr_3846	0.16	+0.7
4,585,223	+		Psyr_3846	0.16	-3.9
4,585,223	+		Psyr_3846	0.16	+1.3
4,585,223	+		Psyr_3846	0.16	-2.0
4,585,223	+		Psyr_3846	0.16	+0.2
4,585,223	+		Psyr_3846	0.16	+0.8
4,585,224	-		Psyr_3846	0.16	-1.2
4,585,224	-		Psyr_3846	0.16	-1.7
4,585,224	-		Psyr_3846	0.16	+0.3
4,585,224	-		Psyr_3846	0.16	+1.2
4,585,224	-		Psyr_3846	0.16	+1.5
4,585,328	+		Psyr_3846	0.28	+1.5
4,585,328	+		Psyr_3846	0.28	+0.7
4,585,533	-		Psyr_3846	0.50	-0.6
4,585,533	-		Psyr_3846	0.50	+0.5
4,585,533	-		Psyr_3846	0.50	-0.5
4,585,533	-		Psyr_3846	0.50	-2.5
4,585,533	-		Psyr_3846	0.50	+1.3
4,585,737	+		Psyr_3846	0.72	+1.0
4,585,737	+		Psyr_3846	0.72	+0.6
4,585,738	-		Psyr_3846	0.72	-3.8
4,585,748	+		Psyr_3846	0.73	-0.4
4,585,810	-		Psyr_3846	0.80	-1.3