Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2892

Experiment: apoplastic, grinding recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, grinding recovery; Green bean
3,468,059	+				-1.6
3,468,096	+		Psyr_2891	0.11	-2.3
3,468,096	+		Psyr_2891	0.11	-1.1
3,468,096	+		Psyr_2891	0.11	-0.4
3,468,096	+		Psyr_2891	0.11	-0.7
3,468,097	-		Psyr_2891	0.11	-0.6
3,468,097	-		Psyr_2891	0.11	-2.8
3,468,097	-		Psyr_2891	0.11	-1.2
3,468,121	+		Psyr_2891	0.14	+1.0
3,468,186	+		Psyr_2891	0.20	-0.6
3,468,186	+		Psyr_2891	0.20	-3.2
3,468,186	+		Psyr_2891	0.20	-1.4
3,468,186	+		Psyr_2891	0.20	-4.3
3,468,186	+		Psyr_2891	0.20	+3.2
3,468,186	+		Psyr_2891	0.20	+2.4
3,468,187	-		Psyr_2891	0.21	-2.8
3,468,187	-		Psyr_2891	0.21	+1.3
3,468,187	-		Psyr_2891	0.21	+2.6
3,468,204	+		Psyr_2891	0.22	+1.5
3,468,204	+		Psyr_2891	0.22	+2.8
3,468,204	+		Psyr_2891	0.22	-0.5
3,468,231	+		Psyr_2891	0.25	+3.6
3,468,231	+		Psyr_2891	0.25	-0.3
3,468,232	-		Psyr_2891	0.25	-1.9
3,468,417	+		Psyr_2891	0.44	-1.8
3,468,417	+		Psyr_2891	0.44	+0.3
3,468,418	-		Psyr_2891	0.44	+1.9
3,468,418	-		Psyr_2891	0.44	-1.2
3,468,418	-		Psyr_2891	0.44	-0.6
3,468,447	-		Psyr_2891	0.47	+0.7
3,468,538	-		Psyr_2891	0.56	+0.7
3,468,538	-		Psyr_2891	0.56	-1.9
3,468,555	+		Psyr_2891	0.58	-0.7
3,468,556	-		Psyr_2891	0.58	-0.4
3,468,606	+		Psyr_2891	0.63	-2.2
3,469,017	+				+2.1
3,469,018	-				-1.4
3,469,026	+				+0.7
3,469,026	+				-0.0
3,469,027	-				-0.3
3,469,041	+				-2.5
3,469,041	+				-3.6
3,469,041	+				+0.3
3,469,041	+				-1.2
3,469,044	+				-0.2
3,469,044	+				-1.2
3,469,044	+				+0.0
3,469,045	-				-2.2
3,469,045	-				-0.5
3,469,045	-				+0.5
3,469,045	-				+0.9
3,469,074	+				+1.2
3,469,074	+				+1.1
3,469,075	-				-1.4
3,469,075	-				-2.1
3,469,075	-				-1.4
3,469,221	+				-0.8
3,469,266	+		Psyr_2892	0.10	-2.4
3,469,267	-		Psyr_2892	0.10	-0.5
3,469,428	+		Psyr_2892	0.17	+1.1
3,469,428	+		Psyr_2892	0.17	+2.3
3,469,506	+		Psyr_2892	0.20	+0.3
3,469,506	+		Psyr_2892	0.20	-0.2
3,469,506	+		Psyr_2892	0.20	-0.9
3,469,506	+		Psyr_2892	0.20	-2.4
3,469,506	+		Psyr_2892	0.20	+0.4
3,469,507	-		Psyr_2892	0.20	+1.0
3,469,507	-		Psyr_2892	0.20	+0.8
3,469,561	-		Psyr_2892	0.22	+0.7
3,469,660	+		Psyr_2892	0.26	-3.4
3,469,668	+		Psyr_2892	0.27	+1.4
3,469,839	+		Psyr_2892	0.34	+0.6
3,469,986	+		Psyr_2892	0.40	-1.8
3,469,986	+		Psyr_2892	0.40	-2.6
3,469,986	+		Psyr_2892	0.40	+0.4
3,469,987	-		Psyr_2892	0.40	-0.8
3,469,987	-		Psyr_2892	0.40	+2.2
3,469,987	-		Psyr_2892	0.40	-0.2
3,469,987	-		Psyr_2892	0.40	+0.6
3,470,016	+		Psyr_2892	0.41	-3.3
3,470,053	-		Psyr_2892	0.42	+1.1
3,470,053	-		Psyr_2892	0.42	-0.2
3,470,102	-		Psyr_2892	0.44	-1.3
3,470,102	-		Psyr_2892	0.44	+0.8
3,470,169	+		Psyr_2892	0.47	+2.4
3,470,178	+		Psyr_2892	0.47	+3.0
3,470,226	+		Psyr_2892	0.49	+0.7
3,470,227	-		Psyr_2892	0.49	-0.9
3,470,321	-		Psyr_2892	0.53	+0.1
3,470,321	-		Psyr_2892	0.53	-2.2
3,470,321	-		Psyr_2892	0.53	+1.6
3,470,369	-		Psyr_2892	0.55	+1.5
3,470,478	+		Psyr_2892	0.60	-1.6
3,470,478	+		Psyr_2892	0.60	-0.2
3,470,493	+		Psyr_2892	0.60	+1.6
3,470,586	+		Psyr_2892	0.64	+0.1
3,470,586	+		Psyr_2892	0.64	-2.4
3,470,586	+		Psyr_2892	0.64	+2.0
3,470,586	+		Psyr_2892	0.64	+0.9
3,470,587	-		Psyr_2892	0.64	-1.9
3,470,587	-		Psyr_2892	0.64	-3.1
3,470,602	-		Psyr_2892	0.65	+1.6
3,470,640	+		Psyr_2892	0.66	+0.8
3,470,641	-		Psyr_2892	0.66	+0.4
3,470,659	+		Psyr_2892	0.67	-0.6
3,470,660	-		Psyr_2892	0.67	-2.3
3,470,660	-		Psyr_2892	0.67	-1.4
3,470,685	+		Psyr_2892	0.68	+3.4
3,470,686	-		Psyr_2892	0.68	+0.7
3,470,709	+		Psyr_2892	0.69	-2.8
3,470,721	+		Psyr_2892	0.70	+0.4
3,470,885	-		Psyr_2892	0.76	-0.9
3,470,944	-		Psyr_2892	0.79	+1.4
3,470,944	-		Psyr_2892	0.79	+0.3
3,471,332	-				-2.8
3,471,365	+				+1.5
3,471,365	+				+0.6
3,471,366	-				+1.4
3,471,415	-				-1.6
3,471,449	+				-2.1
3,471,449	+				+1.3
3,471,449	+				-0.4
3,471,450	-				+0.1
3,471,450	-				+0.6
3,471,450	-				-0.9
3,471,560	-				-0.2
3,471,609	-				-0.2
3,471,625	+				+3.0
3,471,625	+				+0.7
3,471,625	+				-2.7
3,471,626	-				-2.5
3,471,626	-				-2.6
3,471,697	+				+1.0
3,471,697	+				-2.6
3,471,728	+				+2.0
3,471,728	+				-1.6
3,471,728	+				+0.7
3,471,728	+				-0.2
3,471,728	+				-1.9
3,471,728	+				-1.9
3,471,728	+				-0.8
3,471,728	+				+1.1
3,471,728	+				-2.7
3,471,728	+				-2.8
3,471,728	+				+0.3
3,471,728	+				-0.9
3,471,729	-				-0.9
3,471,729	-				-1.8
3,471,729	-				-2.9
3,471,729	-				-1.6
3,471,729	-				+1.7
3,471,729	-				-0.9
3,471,729	-				+0.4
3,471,729	-				-1.8
3,471,855	-				+1.9
3,471,855	-				-0.6
3,472,036	+				+0.1
3,472,036	+				-2.8
3,472,036	+				-2.5
3,472,156	+		Psyr_2893	0.18	+0.8
3,472,156	+		Psyr_2893	0.18	-2.3
3,472,156	+		Psyr_2893	0.18	-2.2
3,472,156	+		Psyr_2893	0.18	+1.4
3,472,156	+		Psyr_2893	0.18	+1.2
3,472,156	+		Psyr_2893	0.18	+1.7
3,472,157	-		Psyr_2893	0.18	-2.3
3,472,157	-		Psyr_2893	0.18	-0.4
3,472,157	-		Psyr_2893	0.18	+0.5
3,472,157	-		Psyr_2893	0.18	+0.7
3,472,157	-		Psyr_2893	0.18	+1.6
3,472,157	-		Psyr_2893	0.18	+1.8
3,472,189	+		Psyr_2893	0.23	+0.1
3,472,189	+		Psyr_2893	0.23	+2.4
3,472,189	+		Psyr_2893	0.23	+2.6
3,472,190	-		Psyr_2893	0.23	-1.4
3,472,190	-		Psyr_2893	0.23	+0.8
3,472,190	-		Psyr_2893	0.23	-1.2
3,472,205	-		Psyr_2893	0.25	+0.9
3,472,205	-		Psyr_2893	0.25	-0.7
3,472,232	+		Psyr_2893	0.29	+0.9
3,472,261	+		Psyr_2893	0.34	+0.7
3,472,261	+		Psyr_2893	0.34	-3.1
3,472,261	+		Psyr_2893	0.34	+1.6
3,472,261	+		Psyr_2893	0.34	+3.4
3,472,261	+		Psyr_2893	0.34	+2.1
3,472,262	-		Psyr_2893	0.34	+4.2
3,472,262	-		Psyr_2893	0.34	+0.3
3,472,262	-		Psyr_2893	0.34	+1.1
3,472,262	-		Psyr_2893	0.34	+0.4
3,472,352	+		Psyr_2893	0.47	+1.3