Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2608

Experiment: apoplastic, grinding recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, grinding recovery; Green bean
3,061,866	+		Psyr_2607	0.27	+1.2
3,061,867	-		Psyr_2607	0.27	+1.7
3,061,872	+		Psyr_2607	0.28	+1.3
3,061,872	+		Psyr_2607	0.28	-1.2
3,061,873	-		Psyr_2607	0.28	-0.0
3,061,937	+		Psyr_2607	0.36	+0.7
3,061,937	+		Psyr_2607	0.36	+0.5
3,061,937	+		Psyr_2607	0.36	+1.4
3,061,938	-		Psyr_2607	0.36	+1.2
3,061,938	-		Psyr_2607	0.36	-2.1
3,061,983	+		Psyr_2607	0.41	-0.6
3,062,276	+		Psyr_2607	0.77	-0.6
3,062,276	+		Psyr_2607	0.77	+0.4
3,062,277	-		Psyr_2607	0.77	-1.6
3,062,277	-		Psyr_2607	0.77	+2.1
3,062,350	+		Psyr_2607	0.85	+0.2
3,062,350	+		Psyr_2607	0.85	-1.1
3,062,350	+		Psyr_2607	0.85	-1.3
3,062,350	+		Psyr_2607	0.85	-1.2
3,062,351	-		Psyr_2607	0.86	+0.4
3,062,351	-		Psyr_2607	0.86	+0.7
3,062,358	-		Psyr_2607	0.86	-1.4
3,062,358	-		Psyr_2607	0.86	-2.4
3,062,364	+		Psyr_2607	0.87	+3.0
3,062,364	+		Psyr_2607	0.87	-0.3
3,062,364	+		Psyr_2607	0.87	+1.8
3,062,364	+		Psyr_2607	0.87	+1.6
3,062,424	+				-0.6
3,062,424	+				-1.8
3,062,425	-				-1.4
3,062,470	+				-1.9
3,062,470	+				+2.4
3,062,471	-				-3.1
3,062,471	-				+1.1
3,062,471	-				-0.0
3,062,471	-				+1.4
3,062,471	-				+1.2
3,062,569	+				+0.7
3,062,630	-				+1.1
3,062,697	-				-2.3
3,062,722	+				+1.5
3,062,722	+				+1.9
3,062,723	-				-1.3
3,062,723	-				+0.2
3,062,931	+				+1.8
3,062,932	-				-2.3
3,062,954	+				+0.2
3,062,954	+				-2.2
3,062,954	+				-0.1
3,062,954	+				-2.7
3,062,954	+				-1.2
3,062,954	+				-0.8
3,062,954	+				+2.1
3,062,954	+				+1.2
3,062,955	-				-2.8
3,062,955	-				-2.5
3,062,955	-				+0.1
3,062,955	-				+1.1
3,062,955	-				-3.3
3,062,955	-				-0.4
3,062,955	-				+0.7
3,062,955	-				-1.6
3,063,276	-				+0.4
3,063,282	+				+1.1
3,063,331	+				-0.2
3,063,471	-				-0.1
3,063,471	-				+2.2
3,063,690	+				+1.1
3,063,690	+				+1.0
3,063,992	+				+0.2
3,063,992	+				+0.8
3,063,993	-				+0.7
3,063,993	-				+0.4
3,063,993	-				-1.2
3,064,099	+				-1.4
3,064,100	-				-0.9
3,064,227	-				-0.4
3,064,240	-				+1.7
3,064,375	+				-1.1
3,064,529	+				+0.4
3,064,529	+				+1.4
3,064,529	+				-0.6
3,064,530	-				-0.0
3,064,530	-				+1.1
3,064,673	+				+1.3
3,064,674	-				-0.1
3,065,310	+				+1.0
3,065,582	+		Psyr_2608	0.10	+0.9
3,065,582	+		Psyr_2608	0.10	-0.2
3,065,583	-		Psyr_2608	0.10	+0.4
3,065,583	-		Psyr_2608	0.10	+0.2
3,065,648	+		Psyr_2608	0.10	+0.7
3,065,648	+		Psyr_2608	0.10	-2.1
3,065,648	+		Psyr_2608	0.10	-0.2
3,065,649	-		Psyr_2608	0.10	-2.1
3,065,649	-		Psyr_2608	0.10	+0.2
3,065,649	-		Psyr_2608	0.10	+1.2
3,065,649	-		Psyr_2608	0.10	-0.1
3,065,807	+		Psyr_2608	0.11	+2.7
3,065,807	+		Psyr_2608	0.11	+1.7
3,065,808	-		Psyr_2608	0.11	-0.2
3,065,855	+		Psyr_2608	0.11	-1.4
3,066,113	+		Psyr_2608	0.12	-1.3
3,066,113	+		Psyr_2608	0.12	-1.4
3,066,113	+		Psyr_2608	0.12	-0.6
3,066,113	+		Psyr_2608	0.12	-1.8
3,066,113	+		Psyr_2608	0.12	-2.8
3,066,114	-		Psyr_2608	0.12	-0.9
3,066,114	-		Psyr_2608	0.12	-0.6
3,066,114	-		Psyr_2608	0.12	-1.2
3,066,122	+		Psyr_2608	0.12	-0.2
3,066,122	+		Psyr_2608	0.12	-2.8
3,066,122	+		Psyr_2608	0.12	+1.8
3,066,539	+		Psyr_2608	0.13	-0.0
3,066,539	+		Psyr_2608	0.13	-2.3
3,066,539	+		Psyr_2608	0.13	-2.6
3,066,539	+		Psyr_2608	0.13	-0.6
3,066,540	-		Psyr_2608	0.13	+0.4
3,066,540	-		Psyr_2608	0.13	-0.5
3,066,548	+		Psyr_2608	0.14	+0.4
3,066,932	+		Psyr_2608	0.15	+1.1
3,067,174	+		Psyr_2608	0.16	+0.4
3,067,174	+		Psyr_2608	0.16	-0.9
3,067,174	+		Psyr_2608	0.16	+0.6
3,067,175	-		Psyr_2608	0.16	-0.1
3,067,175	-		Psyr_2608	0.16	-1.8
3,067,175	-		Psyr_2608	0.16	-0.6
3,067,175	-		Psyr_2608	0.16	-0.5
3,067,176	+		Psyr_2608	0.16	-2.3
3,067,491	+		Psyr_2608	0.17	-2.6
3,067,507	-		Psyr_2608	0.17	-1.8
3,067,805	+		Psyr_2608	0.18	-1.5
3,067,805	+		Psyr_2608	0.18	-2.1
3,067,806	-		Psyr_2608	0.18	+0.3
3,067,806	-		Psyr_2608	0.18	+0.6
3,068,000	+		Psyr_2608	0.19	+1.4
3,068,000	+		Psyr_2608	0.19	-3.1
3,068,001	-		Psyr_2608	0.19	+2.4
3,068,001	-		Psyr_2608	0.19	-0.9
3,068,001	-		Psyr_2608	0.19	+0.2
3,068,009	+		Psyr_2608	0.19	+0.8
3,068,009	+		Psyr_2608	0.19	+1.2
3,068,010	-		Psyr_2608	0.19	-1.2
3,068,010	-		Psyr_2608	0.19	-1.4
3,068,049	+		Psyr_2608	0.19	-1.6
3,068,049	+		Psyr_2608	0.19	+0.5
3,068,050	-		Psyr_2608	0.19	-2.7
3,068,050	-		Psyr_2608	0.19	+0.4
3,068,054	+		Psyr_2608	0.19	-2.6
3,068,054	+		Psyr_2608	0.19	+0.4
3,068,054	+		Psyr_2608	0.19	-0.2
3,068,055	-		Psyr_2608	0.19	+1.2
3,068,055	-		Psyr_2608	0.19	-0.9
3,068,055	-		Psyr_2608	0.19	+0.9
3,068,059	-		Psyr_2608	0.19	-2.4
3,068,351	+		Psyr_2608	0.20	+1.9
3,068,352	-		Psyr_2608	0.20	-0.2
3,068,352	-		Psyr_2608	0.20	-1.6
3,069,071	+		Psyr_2608	0.22	-0.2
3,069,159	+		Psyr_2608	0.23	-0.9
3,069,224	+		Psyr_2608	0.23	-1.8
3,069,224	+		Psyr_2608	0.23	-0.5
3,069,224	+		Psyr_2608	0.23	-3.0
3,069,225	-		Psyr_2608	0.23	-2.5
3,069,225	-		Psyr_2608	0.23	-1.2
3,069,225	-		Psyr_2608	0.23	+1.4
3,069,225	-		Psyr_2608	0.23	-0.5
3,069,356	+		Psyr_2608	0.23	+0.2
3,069,356	+		Psyr_2608	0.23	-2.7
3,069,357	-		Psyr_2608	0.23	-1.2
3,069,357	-		Psyr_2608	0.23	-0.9
3,069,390	-		Psyr_2608	0.23	+0.4
3,069,390	-		Psyr_2608	0.23	+0.4
3,069,821	+		Psyr_2608	0.25	+0.4
3,069,821	+		Psyr_2608	0.25	-2.4
3,069,822	-		Psyr_2608	0.25	-3.0
3,069,822	-		Psyr_2608	0.25	-3.0
3,069,830	+		Psyr_2608	0.25	-1.6
3,069,831	-		Psyr_2608	0.25	+0.9
3,070,054	+		Psyr_2608	0.26	-0.5
3,070,163	-		Psyr_2608	0.26	+0.4
3,070,205	+		Psyr_2608	0.26	-1.9
3,070,549	+		Psyr_2608	0.28	-1.5
3,070,855	+		Psyr_2608	0.29	-2.4
3,070,856	-		Psyr_2608	0.29	-1.8
3,070,856	-		Psyr_2608	0.29	-1.4
3,071,207	+		Psyr_2608	0.30	+0.3
3,071,948	+		Psyr_2608	0.32	-1.2
3,071,949	-		Psyr_2608	0.32	-1.9
3,071,949	-		Psyr_2608	0.32	-1.8
3,072,062	+		Psyr_2608	0.33	+0.4
3,072,062	+		Psyr_2608	0.33	-1.2
3,072,063	-		Psyr_2608	0.33	-2.5
3,072,063	-		Psyr_2608	0.33	-0.9
3,072,063	-		Psyr_2608	0.33	-2.4
3,072,137	+		Psyr_2608	0.33	+0.4
3,072,137	+		Psyr_2608	0.33	-2.4
3,072,137	+		Psyr_2608	0.33	+1.1
3,072,138	-		Psyr_2608	0.33	+0.1
3,072,138	-		Psyr_2608	0.33	-0.9
3,072,138	-		Psyr_2608	0.33	-0.4
3,072,290	+		Psyr_2608	0.34	-1.9
3,072,291	-		Psyr_2608	0.34	-0.2
3,072,444	-		Psyr_2608	0.34	-2.1
3,072,444	-		Psyr_2608	0.34	+1.8
3,072,497	+		Psyr_2608	0.34	-1.4
3,072,497	+		Psyr_2608	0.34	-1.9
3,072,497	+		Psyr_2608	0.34	-0.1
3,072,498	-		Psyr_2608	0.34	-2.6
3,072,498	-		Psyr_2608	0.34	-2.1
3,072,498	-		Psyr_2608	0.34	+0.1
3,072,498	-		Psyr_2608	0.34	-2.3
3,072,498	-		Psyr_2608	0.34	-1.8
3,072,553	+		Psyr_2608	0.35	-1.6
3,072,569	+		Psyr_2608	0.35	+0.4
3,072,623	-		Psyr_2608	0.35	+0.5
3,072,731	+		Psyr_2608	0.35	+1.4
3,072,732	-		Psyr_2608	0.35	-1.4
3,072,769	+		Psyr_2608	0.35	+1.4
3,073,023	-		Psyr_2608	0.36	-1.4
3,073,232	+		Psyr_2608	0.37	+0.3
3,073,232	+		Psyr_2608	0.37	+2.0
3,073,379	+		Psyr_2608	0.37	+1.0
3,073,380	-		Psyr_2608	0.37	+0.4
3,073,476	-		Psyr_2608	0.38	-3.0
3,074,007	+		Psyr_2608	0.40	-2.5
3,074,184	-		Psyr_2608	0.40	-1.9
3,074,327	+		Psyr_2608	0.41	-1.2
3,074,327	+		Psyr_2608	0.41	-1.5
3,074,328	-		Psyr_2608	0.41	-2.5
3,074,328	-		Psyr_2608	0.41	-1.1
3,074,328	-		Psyr_2608	0.41	+2.6
3,074,631	+		Psyr_2608	0.42	+0.9
3,074,631	+		Psyr_2608	0.42	-0.4
3,075,230	+		Psyr_2608	0.44	+0.3
3,075,230	+		Psyr_2608	0.44	+2.2
3,075,230	+		Psyr_2608	0.44	+0.6
3,075,230	+		Psyr_2608	0.44	+0.0
3,075,231	-		Psyr_2608	0.44	-1.8
3,075,231	-		Psyr_2608	0.44	+1.1
3,075,617	+		Psyr_2608	0.45	-1.3
3,075,617	+		Psyr_2608	0.45	+2.5
3,075,617	+		Psyr_2608	0.45	-3.0
3,075,617	+		Psyr_2608	0.45	-2.4
3,075,617	+		Psyr_2608	0.45	-1.2
3,075,618	-		Psyr_2608	0.45	-0.6
3,075,618	-		Psyr_2608	0.45	-0.5
3,075,618	-		Psyr_2608	0.45	+2.0
3,075,618	-		Psyr_2608	0.45	-1.4
3,075,618	-		Psyr_2608	0.45	+0.7
3,076,021	+		Psyr_2608	0.47	-1.1
3,076,125	-		Psyr_2608	0.47	-0.5
3,076,374	+		Psyr_2608	0.48	-1.9
3,076,375	-		Psyr_2608	0.48	+0.4
3,076,392	-		Psyr_2608	0.48	-2.7
3,076,433	+		Psyr_2608	0.48	-0.7
3,076,434	-		Psyr_2608	0.48	-0.8
3,076,580	+		Psyr_2608	0.49	+0.3
3,076,581	-		Psyr_2608	0.49	-0.6
3,076,741	+		Psyr_2608	0.49	-0.2
3,076,742	-		Psyr_2608	0.49	+0.4
3,076,800	-		Psyr_2608	0.49	-2.2
3,077,520	-				+1.4
3,077,520	-		Psyr_2608	0.52	-3.4
3,077,520	-		Psyr_2608	0.52	+0.4
3,077,528	+		Psyr_2608	0.52	-1.9
3,077,582	+		Psyr_2608	0.52	-2.5
3,077,659	+		Psyr_2608	0.53	-1.1
3,077,659	+		Psyr_2608	0.53	-1.4
3,077,659	+		Psyr_2608	0.53	-0.6
3,077,659	+		Psyr_2608	0.53	-0.2
3,077,659	+		Psyr_2608	0.53	-2.3
3,077,660	-		Psyr_2608	0.53	+0.6
3,077,679	+		Psyr_2608	0.53	+0.5
3,078,431	+		Psyr_2608	0.55	-0.2
3,078,431	+		Psyr_2608	0.55	+0.2
3,079,138	-		Psyr_2608	0.58	-2.2
3,079,353	-		Psyr_2608	0.58	+1.1
3,079,596	-		Psyr_2608	0.59	+0.7
3,079,596	-		Psyr_2608	0.59	-0.2
3,079,596	-		Psyr_2608	0.59	-2.1
3,079,596	-		Psyr_2608	0.59	+1.4
3,079,596	-		Psyr_2608	0.59	+2.0
3,079,784	+		Psyr_2608	0.60	-2.6
3,080,056	+		Psyr_2608	0.61	-2.9
3,080,056	+		Psyr_2608	0.61	-2.1
3,080,057	-		Psyr_2608	0.61	-0.2
3,080,057	-		Psyr_2608	0.61	-0.8
3,080,108	+		Psyr_2608	0.61	-0.8
3,080,526	+		Psyr_2608	0.63	+3.2
3,080,527	-		Psyr_2608	0.63	+0.1
3,080,531	-		Psyr_2608	0.63	+0.5
3,080,531	-		Psyr_2608	0.63	-1.2
3,080,961	+		Psyr_2608	0.64	-1.6
3,081,158	+		Psyr_2608	0.65	-0.4
3,081,198	-		Psyr_2608	0.65	+0.4
3,081,400	+		Psyr_2608	0.66	-0.6
3,081,409	+		Psyr_2608	0.66	+0.9
3,081,692	+		Psyr_2608	0.67	-1.8
3,081,693	-		Psyr_2608	0.67	+0.9
3,081,738	+		Psyr_2608	0.67	-2.3
3,081,768	-		Psyr_2608	0.67	-1.8
3,081,917	+		Psyr_2608	0.67	+1.8
3,081,941	+		Psyr_2608	0.68	+2.2
3,081,941	+		Psyr_2608	0.68	-3.3
3,081,941	+		Psyr_2608	0.68	-2.4
3,081,942	-		Psyr_2608	0.68	-0.7
3,081,942	-		Psyr_2608	0.68	-2.3
3,081,942	-		Psyr_2608	0.68	-2.9
3,082,399	-		Psyr_2608	0.69	-0.6
3,082,857	-		Psyr_2608	0.71	-2.3
3,082,899	-		Psyr_2608	0.71	+1.1
3,083,045	+		Psyr_2608	0.71	+0.4
3,083,046	-		Psyr_2608	0.71	+0.7
3,083,094	+		Psyr_2608	0.72	+1.0
3,083,094	+		Psyr_2608	0.72	-0.2
3,083,095	-		Psyr_2608	0.72	-1.8
3,083,095	-		Psyr_2608	0.72	-1.6
3,083,099	-		Psyr_2608	0.72	-2.8
3,083,370	-		Psyr_2608	0.73	-1.1
3,083,706	+		Psyr_2608	0.74	+1.1
3,083,912	+		Psyr_2608	0.74	-1.2
3,084,670	+		Psyr_2608	0.77	-2.7
3,084,671	-		Psyr_2608	0.77	+0.4
3,086,106	+		Psyr_2608	0.82	-1.6
3,086,108	+		Psyr_2608	0.82	-0.9
3,086,108	+		Psyr_2608	0.82	-0.5
3,086,108	+		Psyr_2608	0.82	-0.9
3,086,108	+		Psyr_2608	0.82	-1.2
3,086,150	+		Psyr_2608	0.82	+1.9
3,086,151	-		Psyr_2608	0.82	-3.2
3,086,715	-		Psyr_2608	0.84	+1.4
3,087,230	+		Psyr_2608	0.86	+1.8
3,087,230	+		Psyr_2608	0.86	+1.4
3,087,231	-		Psyr_2608	0.86	+1.5
3,087,231	-		Psyr_2608	0.86	+0.4
3,087,412	-		Psyr_2608	0.87	-1.2
3,087,693	+		Psyr_2608	0.88	+0.4
3,087,835	-		Psyr_2608	0.88	+2.6
3,087,855	+		Psyr_2608	0.88	-0.2
3,087,856	-		Psyr_2608	0.88	-2.1
3,089,195	+				+0.2
3,089,442	+				-3.1
3,089,822	+				+1.0
3,089,823	-				-1.9
3,089,871	-				-1.3
3,090,083	-				+0.1
3,090,100	-				-2.9
3,090,205	-				-1.6
3,090,216	+				+2.1
3,090,257	+				+0.4
3,090,258	-				-0.6
3,090,258	-				+0.4
3,090,494	+				+0.2
3,090,495	-				-0.3
3,090,525	-				-0.5
3,090,525	-				-0.1
3,090,573	-				-0.8
3,090,957	-				-0.9
3,091,162	-				+1.1
3,091,289	+				-0.1
3,091,570	+				-3.1
3,091,571	-				-0.1
3,091,771	+		Psyr_2609	0.25	-1.7
3,091,928	+		Psyr_2609	0.38	+0.4
3,091,928	+		Psyr_2609	0.38	-0.9
3,092,020	+		Psyr_2609	0.46	+0.6
3,092,020	+		Psyr_2609	0.46	+2.8
3,092,021	-		Psyr_2609	0.46	-2.5