Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2396

Experiment: apoplastic, grinding recovery; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2394 and Psyr_2395 are separated by 101 nucleotidesPsyr_2395 and Psyr_2396 overlap by 4 nucleotidesPsyr_2396 and Psyr_2397 are separated by 97 nucleotides Psyr_2394: Psyr_2394 - succinate semialdehyde dehydrogenase, at 2,775,689 to 2,777,080 _2394 Psyr_2395: Psyr_2395 - transcriptional regulator, LysR family, at 2,777,182 to 2,778,057 _2395 Psyr_2396: Psyr_2396 - Tartrate dehydrogenase, at 2,778,054 to 2,779,175 _2396 Psyr_2397: Psyr_2397 - transcriptional regulator, LysR family, at 2,779,273 to 2,780,187 _2397 Position (kb) 2778 2779 2780Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2777.074 kb on + strandat 2777.116 kb on + strandat 2777.116 kb on + strandat 2777.116 kb on + strandat 2777.116 kb on + strandat 2777.116 kb on + strandat 2777.116 kb on + strandat 2777.116 kb on + strandat 2777.117 kb on - strandat 2777.118 kb on + strandat 2777.119 kb on - strandat 2777.119 kb on - strandat 2777.380 kb on + strand, within Psyr_2395at 2777.380 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.734 kb on - strand, within Psyr_2395at 2777.734 kb on - strand, within Psyr_2395at 2777.734 kb on - strand, within Psyr_2395at 2777.734 kb on - strand, within Psyr_2395at 2777.734 kb on - strand, within Psyr_2395at 2777.928 kb on + strand, within Psyr_2395at 2778.056 kb on - strandat 2778.728 kb on - strand, within Psyr_2396at 2778.994 kb on + strand, within Psyr_2396at 2778.998 kb on - strand, within Psyr_2396at 2779.021 kb on + strand, within Psyr_2396at 2779.021 kb on + strand, within Psyr_2396at 2779.127 kb on + strandat 2779.217 kb on - strandat 2779.229 kb on + strandat 2779.375 kb on + strand, within Psyr_2397at 2779.375 kb on + strand, within Psyr_2397at 2779.389 kb on + strand, within Psyr_2397at 2779.390 kb on - strand, within Psyr_2397at 2779.390 kb on - strand, within Psyr_2397at 2780.062 kb on + strand, within Psyr_2397at 2780.062 kb on + strand, within Psyr_2397at 2780.063 kb on - strand, within Psyr_2397at 2780.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic, grinding recovery; Green bean
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2,777,074 + +4.0
2,777,116 + -2.9
2,777,116 + +1.3
2,777,116 + -2.3
2,777,116 + -0.1
2,777,116 + +1.2
2,777,116 + +0.4
2,777,116 + +0.5
2,777,117 - -3.2
2,777,118 + +0.4
2,777,119 - -0.6
2,777,119 - +0.2
2,777,380 + Psyr_2395 0.23 +2.7
2,777,380 + Psyr_2395 0.23 -2.5
2,777,733 + Psyr_2395 0.63 -1.2
2,777,733 + Psyr_2395 0.63 -2.7
2,777,733 + Psyr_2395 0.63 +1.5
2,777,733 + Psyr_2395 0.63 +1.7
2,777,733 + Psyr_2395 0.63 +2.6
2,777,733 + Psyr_2395 0.63 +0.7
2,777,733 + Psyr_2395 0.63 -0.6
2,777,733 + Psyr_2395 0.63 -0.9
2,777,733 + Psyr_2395 0.63 -2.9
2,777,734 - Psyr_2395 0.63 -2.9
2,777,734 - Psyr_2395 0.63 +1.0
2,777,734 - Psyr_2395 0.63 -2.2
2,777,734 - Psyr_2395 0.63 -1.2
2,777,734 - Psyr_2395 0.63 -2.2
2,777,928 + Psyr_2395 0.85 +0.4
2,778,056 - +0.7
2,778,728 - Psyr_2396 0.60 -2.4
2,778,994 + Psyr_2396 0.84 -2.8
2,778,998 - Psyr_2396 0.84 -0.6
2,779,021 + Psyr_2396 0.86 -3.0
2,779,021 + Psyr_2396 0.86 +0.5
2,779,127 + +0.7
2,779,217 - +1.9
2,779,229 + +1.4
2,779,375 + Psyr_2397 0.11 +0.5
2,779,375 + Psyr_2397 0.11 -0.4
2,779,389 + Psyr_2397 0.13 -1.6
2,779,390 - Psyr_2397 0.13 +0.2
2,779,390 - Psyr_2397 0.13 -2.1
2,780,062 + Psyr_2397 0.86 -0.2
2,780,062 + Psyr_2397 0.86 +3.0
2,780,063 - Psyr_2397 0.86 -2.1
2,780,153 - +2.1

Or see this region's nucleotide sequence