Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1499

Experiment: apoplastic, grinding recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, grinding recovery; Green bean
1,686,851	+		Psyr_1498	0.33	-2.8
1,686,851	+		Psyr_1498	0.33	+0.1
1,686,852	-		Psyr_1498	0.33	+1.3
1,686,852	-		Psyr_1498	0.33	+1.2
1,686,852	-		Psyr_1498	0.33	-0.4
1,686,852	-		Psyr_1498	0.33	-3.0
1,686,852	-		Psyr_1498	0.33	-1.0
1,686,895	+		Psyr_1498	0.36	-0.8
1,686,895	+		Psyr_1498	0.36	-1.0
1,686,895	+		Psyr_1498	0.36	-1.6
1,686,895	+		Psyr_1498	0.36	+0.7
1,686,895	+		Psyr_1498	0.36	+0.6
1,686,895	+		Psyr_1498	0.36	-0.9
1,686,896	-		Psyr_1498	0.36	-2.6
1,686,896	-		Psyr_1498	0.36	-0.7
1,686,896	-		Psyr_1498	0.36	+0.0
1,686,896	-		Psyr_1498	0.36	-0.0
1,686,902	+		Psyr_1498	0.36	-1.0
1,686,903	-		Psyr_1498	0.36	+1.3
1,686,913	+		Psyr_1498	0.37	+0.8
1,687,212	+		Psyr_1498	0.59	+0.8
1,687,213	-		Psyr_1498	0.59	-0.4
1,687,213	-		Psyr_1498	0.59	+1.2
1,687,306	+		Psyr_1498	0.66	+0.5
1,687,365	+		Psyr_1498	0.70	-2.8
1,687,366	-		Psyr_1498	0.70	-0.4
1,687,368	+		Psyr_1498	0.70	-2.6
1,687,369	-		Psyr_1498	0.70	+2.1
1,687,369	-		Psyr_1498	0.70	+1.2
1,687,369	-		Psyr_1498	0.70	-0.3
1,687,402	+		Psyr_1498	0.72	+0.6
1,687,402	+		Psyr_1498	0.72	-0.6
1,687,403	-		Psyr_1498	0.73	+2.0
1,687,403	-		Psyr_1498	0.73	-2.1
1,687,403	-		Psyr_1498	0.73	-1.8
1,687,453	+		Psyr_1498	0.76	+0.6
1,687,454	+		Psyr_1498	0.76	+0.4
1,687,455	-		Psyr_1498	0.76	+3.6
1,687,490	+		Psyr_1498	0.79	+1.2
1,687,490	+		Psyr_1498	0.79	+1.6
1,687,490	+		Psyr_1498	0.79	-0.1
1,687,544	-		Psyr_1498	0.83	+2.7
1,687,576	+		Psyr_1498	0.85	-1.8
1,687,576	+		Psyr_1498	0.85	-2.2
1,687,704	-				+1.4
1,687,706	+				-1.9
1,687,706	+				+0.8
1,687,707	-				+0.2
1,687,707	-				+1.3
1,687,707	-				+0.9
1,687,715	+				-4.0
1,687,715	+				-0.2
1,687,715	+				-1.3
1,687,715	+				+0.4
1,687,715	+				-1.8
1,687,715	+				+1.5
1,687,715	+				+0.3
1,687,715	+				-1.8
1,687,715	+				+0.7
1,687,715	+				+1.6
1,687,716	-				-1.8
1,687,716	-				+0.2
1,688,055	+		Psyr_1499	0.44	-2.2
1,688,055	+		Psyr_1499	0.44	-1.9
1,688,056	-		Psyr_1499	0.44	+3.4
1,688,056	-		Psyr_1499	0.44	+0.1
1,688,056	-		Psyr_1499	0.44	-3.1
1,688,164	+		Psyr_1499	0.68	-1.7
1,688,164	+		Psyr_1499	0.68	-0.0
1,688,294	+				-2.1
1,688,295	-				-0.0
1,688,295	-				+0.7
1,688,295	-				+1.0
1,688,301	+				+1.9
1,688,301	+				-1.4
1,688,301	+				-0.3
1,688,301	+				-0.2
1,688,301	+				+0.8
1,688,302	-				+0.9
1,688,302	-				+0.7
1,688,302	-				+0.5
1,688,304	-				-1.0
1,688,326	-				-3.0
1,688,327	+				-0.4
1,688,327	+				+1.0
1,688,349	+				-0.6
1,688,349	+				+2.8
1,688,349	+				-0.8
1,688,350	-				+0.0
1,688,350	-				-0.6
1,688,350	-				-1.2
1,688,469	+		Psyr_1500	0.22	-1.2
1,688,469	+		Psyr_1500	0.22	+2.3
1,688,469	+		Psyr_1500	0.22	-1.6
1,688,469	+		Psyr_1500	0.22	+1.7
1,688,469	+		Psyr_1500	0.22	-0.5
1,688,469	+		Psyr_1500	0.22	+0.7
1,688,469	+		Psyr_1500	0.22	-3.4
1,688,470	-		Psyr_1500	0.22	-1.2
1,688,470	-		Psyr_1500	0.22	-0.0
1,688,470	-		Psyr_1500	0.22	-2.9
1,688,470	-		Psyr_1500	0.22	-1.4
1,688,470	-		Psyr_1500	0.22	+0.2
1,688,470	-		Psyr_1500	0.22	+2.3
1,688,470	-		Psyr_1500	0.22	+1.6
1,688,470	-		Psyr_1500	0.22	+0.4
1,688,492	+		Psyr_1500	0.26	+0.1
1,688,505	-		Psyr_1500	0.28	-1.2
1,688,505	-		Psyr_1500	0.28	-3.2
1,688,505	-		Psyr_1500	0.28	+1.1
1,688,510	+		Psyr_1500	0.29	+0.9
1,688,593	-		Psyr_1500	0.44	+0.8
1,688,593	-		Psyr_1500	0.44	-1.4
1,688,637	+		Psyr_1500	0.52	-3.0
1,688,637	+		Psyr_1500	0.52	-2.1
1,688,637	+		Psyr_1500	0.52	-2.4
1,688,637	+		Psyr_1500	0.52	-1.8
1,688,637	+		Psyr_1500	0.52	+0.6
1,688,637	+				-0.0
1,688,637	+		Psyr_1500	0.52	-1.2
1,688,637	+		Psyr_1500	0.52	-1.2
1,688,638	-		Psyr_1500	0.52	-2.5
1,688,638	-		Psyr_1500	0.52	-0.8
1,688,638	-		Psyr_1500	0.52	+1.1
1,688,638	-		Psyr_1500	0.52	+4.1
1,688,638	-		Psyr_1500	0.52	-2.1
1,688,638	-		Psyr_1500	0.52	-3.0
1,688,638	-		Psyr_1500	0.52	-1.8
1,688,638	-		Psyr_1500	0.52	-0.4
1,688,638	-		Psyr_1500	0.52	-1.2
1,688,638	-		Psyr_1500	0.52	-0.9
1,688,664	+		Psyr_1500	0.57	+0.9
1,688,664	+		Psyr_1500	0.57	-1.8
1,688,700	+		Psyr_1500	0.63	-0.7
1,688,700	+		Psyr_1500	0.63	+0.6
1,688,742	+		Psyr_1500	0.71	-1.6
1,688,838	+		Psyr_1500	0.88	+1.4
1,688,838	+		Psyr_1500	0.88	+0.6
1,688,838	+		Psyr_1500	0.88	-1.6
1,688,838	+		Psyr_1500	0.88	-1.1
1,688,838	+		Psyr_1500	0.88	-2.8
1,688,838	+		Psyr_1500	0.88	-2.2
1,688,838	+		Psyr_1500	0.88	-1.1
1,688,838	+		Psyr_1500	0.88	-0.4
1,688,838	+		Psyr_1500	0.88	+0.8
1,688,838	+		Psyr_1500	0.88	+1.8
1,688,838	+		Psyr_1500	0.88	+1.6
1,688,838	+		Psyr_1500	0.88	-0.2
1,688,838	+		Psyr_1500	0.88	-2.3
1,688,839	-		Psyr_1500	0.88	-1.4
1,688,839	-		Psyr_1500	0.88	-0.3
1,688,839	-		Psyr_1500	0.88	-1.6
1,688,839	-		Psyr_1500	0.88	-0.4
1,688,839	-		Psyr_1500	0.88	-1.0
1,688,839	-		Psyr_1500	0.88	+0.7
1,688,839	-		Psyr_1500	0.88	+1.9
1,688,839	-		Psyr_1500	0.88	-1.2
1,688,839	-		Psyr_1500	0.88	+1.4
1,688,839	-		Psyr_1500	0.88	-0.8
1,688,839	-		Psyr_1500	0.88	+1.8
1,688,839	-		Psyr_1500	0.88	+0.3
1,688,839	-		Psyr_1500	0.88	-3.0
1,688,842	+		Psyr_1500	0.89	-2.4
1,688,842	+		Psyr_1500	0.89	+1.5
1,688,921	+				-2.2
1,688,983	-				-1.7
1,689,002	-				-1.5
1,689,008	+		Psyr_1501	0.10	-3.7
1,689,008	+		Psyr_1501	0.10	-2.0
1,689,009	-		Psyr_1501	0.10	-1.6
1,689,009	-		Psyr_1501	0.10	+1.0
1,689,009	-		Psyr_1501	0.10	+0.6
1,689,077	+		Psyr_1501	0.20	+1.4
1,689,078	-		Psyr_1501	0.20	+0.5
1,689,078	-		Psyr_1501	0.20	+1.8
1,689,078	-		Psyr_1501	0.20	-0.2
1,689,078	-		Psyr_1501	0.20	+1.1
1,689,080	+		Psyr_1501	0.20	+1.9
1,689,080	+		Psyr_1501	0.20	+0.7
1,689,080	+		Psyr_1501	0.20	-0.2
1,689,227	-		Psyr_1501	0.40	+0.3
1,689,266	-		Psyr_1501	0.45	-0.6