Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1423

Experiment: apoplastic, grinding recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, grinding recovery; Green bean
1,610,721	+		Psyr_1422	0.71	-1.0
1,610,721	+		Psyr_1422	0.71	-0.6
1,610,721	+		Psyr_1422	0.71	-1.2
1,610,721	+		Psyr_1422	0.71	+0.0
1,610,722	-		Psyr_1422	0.71	-3.7
1,610,722	-		Psyr_1422	0.71	-0.2
1,610,722	-		Psyr_1422	0.71	-1.9
1,610,722	-		Psyr_1422	0.71	-2.1
1,610,773	-		Psyr_1422	0.74	+2.0
1,610,773	-		Psyr_1422	0.74	-1.3
1,610,773	-		Psyr_1422	0.74	-1.9
1,610,961	+		Psyr_1422	0.84	-1.9
1,610,961	+		Psyr_1422	0.84	-1.4
1,610,961	+		Psyr_1422	0.84	+0.8
1,610,961	+		Psyr_1422	0.84	-1.0
1,610,961	+		Psyr_1422	0.84	-2.7
1,610,961	+		Psyr_1422	0.84	-2.0
1,610,961	+		Psyr_1422	0.84	-1.2
1,610,961	+		Psyr_1422	0.84	-1.6
1,610,961	+		Psyr_1422	0.84	+0.1
1,610,962	-		Psyr_1422	0.84	-0.4
1,610,962	-		Psyr_1422	0.84	-0.4
1,610,962	-		Psyr_1422	0.84	+0.1
1,610,962	-		Psyr_1422	0.84	+1.6
1,610,962	-		Psyr_1422	0.84	+1.2
1,610,973	-		Psyr_1422	0.84	+0.6
1,610,977	+		Psyr_1422	0.85	+0.1
1,610,977	+		Psyr_1422	0.85	+0.9
1,610,977	+		Psyr_1422	0.85	+0.0
1,610,977	+		Psyr_1422	0.85	-0.4
1,610,977	+		Psyr_1422	0.85	-2.6
1,610,978	-		Psyr_1422	0.85	-2.4
1,610,978	-		Psyr_1422	0.85	-2.0
1,610,978	-		Psyr_1422	0.85	+1.4
1,611,027	+		Psyr_1422	0.87	-1.0
1,611,028	-		Psyr_1422	0.87	-0.1
1,611,028	-		Psyr_1422	0.87	+0.9
1,611,028	-		Psyr_1422	0.87	+0.4
1,611,078	+		Psyr_1422	0.90	-1.5
1,611,078	+		Psyr_1422	0.90	-0.0
1,611,078	+		Psyr_1422	0.90	+0.9
1,611,079	-		Psyr_1422	0.90	+0.8
1,611,079	-		Psyr_1422	0.90	+1.0
1,611,099	+				-2.4
1,611,099	+				-3.2
1,611,099	+				+0.4
1,611,099	+				+1.4
1,611,099	+				-0.7
1,611,099	+				-2.3
1,611,265	+				+1.6
1,611,266	-				-1.6
1,611,266	-				+1.4
1,611,266	-				+1.7
1,611,274	-				-1.1
1,611,274	-				-0.4
1,611,274	-				-2.4
1,611,274	-				+0.1
1,611,274	-				-1.9
1,611,274	-				+1.6
1,611,274	-				+2.9
1,611,274	-				-1.0
1,611,313	-				-2.6
1,611,313	-				+1.1
1,611,313	-				+2.0
1,611,314	+				+0.4
1,611,314	+				+3.4
1,611,314	+				-1.9
1,611,315	-				-1.3
1,611,315	-				-0.6
1,611,315	-				+1.2
1,611,315	-				-2.1
1,611,315	-				-3.4
1,611,341	+				+1.5
1,611,341	+				-0.2
1,611,341	+				+1.9
1,611,341	+				+1.3
1,611,341	+				-2.4
1,611,341	+				-1.4
1,611,341	+				+0.4
1,611,341	+				+0.0
1,611,341	+				+0.5
1,611,341	+				-1.6
1,611,341	+				+1.7
1,611,341	+				-1.2
1,611,341	+				+0.7
1,611,341	+				-1.1
1,611,361	+				+1.6
1,611,361	+				+0.3
1,611,362	-				-0.9
1,611,362	-				+1.9
1,611,363	+				-2.3
1,611,363	+				-2.4
1,611,363	+				+0.1
1,611,364	-				-0.1
1,611,364	-				+2.1
1,611,364	-				+1.4
1,611,365	+				+0.9
1,611,365	+				+2.6
1,611,365	+				-0.4
1,611,365	+				-2.8
1,611,365	+				-3.0
1,611,365	+				-1.4
1,611,365	+				-3.1
1,611,365	+				-1.0
1,611,365	+				+0.6
1,611,365	+				-1.3
1,611,365	+				-2.1
1,611,365	+				-0.2
1,611,365	+				-2.9
1,611,365	+				-1.5
1,611,365	+				-2.0
1,611,365	+				-2.3
1,611,365	+				-2.0
1,611,365	+				+1.9
1,611,365	+				+1.0
1,611,365	+				-0.1
1,611,365	+				+0.3
1,611,365	+				-2.2
1,611,365	+				+0.0
1,611,366	-				+1.1
1,611,366	-				-0.4
1,611,366	-				+1.6
1,611,366	-				-0.7
1,611,366	-				+0.2
1,611,366	-				+1.7
1,611,366	-				+0.0
1,611,366	-				+0.1
1,611,366	-				-2.1
1,611,366	-				-0.8
1,611,366	-				-1.4
1,611,366	-				+0.3
1,611,366	-				-1.0
1,611,366	-				-1.6
1,611,366	-				-1.5
1,611,366	-				-1.4
1,611,366	-				-1.2
1,611,366	-				+0.4
1,611,366	-				+0.0
1,611,366	-				+1.0
1,611,366	-				-0.4
1,611,366	-				+2.6
1,611,369	+				+0.2
1,611,369	+				-3.3
1,611,369	+				+0.1
1,611,369	+				+2.6
1,611,369	+				-1.9
1,611,370	-				-1.0
1,611,370	-				-1.5
1,611,370	-				+0.0
1,611,370	-				+1.2
1,611,461	-				-3.1
1,611,563	-				+0.9
1,611,563	-				+2.2
1,611,639	+				-3.0
1,611,639	+				+0.5
1,611,640	-				-1.9
1,611,640	-				-1.7
1,611,640	-				-0.4
1,611,640	-				+0.4
1,611,834	+		Psyr_1423	0.19	+0.5
1,611,834	+		Psyr_1423	0.19	-1.0
1,611,834	+		Psyr_1423	0.19	-0.6
1,611,834	+		Psyr_1423	0.19	-0.9
1,612,002	+		Psyr_1423	0.44	+3.7
1,612,002	+		Psyr_1423	0.44	-0.9
1,612,002	+		Psyr_1423	0.44	-0.7
1,612,003	-		Psyr_1423	0.44	+1.6
1,612,003	-		Psyr_1423	0.44	+1.0
1,612,003	-		Psyr_1423	0.44	+2.9
1,612,012	-		Psyr_1423	0.45	+0.3
1,612,012	-		Psyr_1423	0.45	+2.2
1,612,032	-		Psyr_1423	0.48	-2.4
1,612,032	-		Psyr_1423	0.48	-1.9
1,612,273	-		Psyr_1423	0.83	+2.6
1,612,273	-		Psyr_1423	0.83	+0.8
1,612,286	+		Psyr_1423	0.85	+0.3
1,612,286	+		Psyr_1423	0.85	-2.6
1,612,286	+		Psyr_1423	0.85	+0.3
1,612,287	-		Psyr_1423	0.85	+1.4
1,612,287	-		Psyr_1423	0.85	+1.5
1,612,294	+		Psyr_1423	0.86	-0.1
1,612,491	-				-0.9
1,612,514	-				+1.6
1,612,605	+		Psyr_1424	0.23	-1.9
1,612,605	+		Psyr_1424	0.23	+0.0
1,612,628	-		Psyr_1424	0.28	-1.0
1,612,781	+		Psyr_1424	0.63	+0.5
1,612,848	-		Psyr_1424	0.79	-2.0
1,612,911	+				-0.9
1,612,911	+				-1.0
1,612,911	+				-2.6
1,612,911	+				-2.6
1,612,911	+				+0.6
1,612,911	+				-1.0
1,612,911	+				-0.4
1,612,911	+				+1.2
1,612,911	+				-1.1
1,612,911	+				+0.5
1,612,976	-				+3.0
1,612,976	-				-0.0
1,612,976	-				-1.6
1,612,976	-				+2.5
1,613,104	+		Psyr_1425	0.14	-1.9
1,613,161	+		Psyr_1425	0.18	-0.6
1,613,161	+		Psyr_1425	0.18	+0.9
1,613,161	+		Psyr_1425	0.18	+0.6
1,613,161	+		Psyr_1425	0.18	-0.7
1,613,161	+		Psyr_1425	0.18	-1.9
1,613,161	+		Psyr_1425	0.18	-1.6
1,613,161	+		Psyr_1425	0.18	+0.1
1,613,162	-		Psyr_1425	0.18	+0.8
1,613,162	-		Psyr_1425	0.18	-3.0
1,613,162	-		Psyr_1425	0.18	-2.0
1,613,162	-		Psyr_1425	0.18	+0.7
1,613,162	-		Psyr_1425	0.18	-2.2
1,613,162	-		Psyr_1425	0.18	+1.8
1,613,164	-		Psyr_1425	0.19	+1.0
1,613,171	-		Psyr_1425	0.19	+0.6
1,613,233	+		Psyr_1425	0.24	+2.4
1,613,233	+		Psyr_1425	0.24	-0.3
1,613,233	+		Psyr_1425	0.24	+1.6
1,613,233	+		Psyr_1425	0.24	-1.9
1,613,234	-		Psyr_1425	0.24	-3.1
1,613,234	-		Psyr_1425	0.24	-0.6
1,613,234	-		Psyr_1425	0.24	+1.9
1,613,319	+		Psyr_1425	0.31	+1.3
1,613,319	+		Psyr_1425	0.31	-0.7
1,613,320	-		Psyr_1425	0.31	+1.1
1,613,320	-		Psyr_1425	0.31	-0.5
1,613,320	-		Psyr_1425	0.31	+0.0
1,613,320	-		Psyr_1425	0.31	+2.0
1,613,320	-		Psyr_1425	0.31	+0.7