Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1275

Experiment: apoplastic, grinding recovery; Green bean

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1273 and Psyr_1274 are separated by 69 nucleotidesPsyr_1274 and Psyr_1275 overlap by 1 nucleotides Psyr_1273: Psyr_1273 - NUDIX hydrolase, at 1,438,999 to 1,439,595 _1273 Psyr_1274: Psyr_1274 - transferase hexapeptide repeat protein, at 1,439,665 to 1,440,189 _1274 Psyr_1275: Psyr_1275 - Protein of unknown function DUF1289, at 1,440,189 to 1,440,407 _1275 Position (kb) 1440 1441Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1439.323 kb on + strand, within Psyr_1273at 1439.323 kb on + strand, within Psyr_1273at 1439.323 kb on + strand, within Psyr_1273at 1439.323 kb on + strand, within Psyr_1273at 1439.324 kb on - strand, within Psyr_1273at 1439.464 kb on + strand, within Psyr_1273at 1439.464 kb on + strand, within Psyr_1273at 1439.465 kb on - strand, within Psyr_1273at 1439.477 kb on - strand, within Psyr_1273at 1439.492 kb on - strand, within Psyr_1273at 1439.492 kb on - strand, within Psyr_1273at 1439.531 kb on + strand, within Psyr_1273at 1439.545 kb on + strandat 1439.546 kb on - strandat 1439.546 kb on - strandat 1439.625 kb on + strandat 1439.625 kb on + strandat 1439.625 kb on + strandat 1439.625 kb on + strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.626 kb on - strandat 1439.643 kb on - strandat 1439.942 kb on - strand, within Psyr_1274at 1439.995 kb on + strand, within Psyr_1274at 1439.996 kb on - strand, within Psyr_1274at 1439.996 kb on - strand, within Psyr_1274at 1439.996 kb on - strand, within Psyr_1274at 1439.996 kb on - strand, within Psyr_1274at 1440.137 kb on - strandat 1440.137 kb on - strandat 1440.137 kb on - strandat 1440.140 kb on + strandat 1440.140 kb on + strandat 1440.140 kb on + strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.141 kb on - strandat 1440.239 kb on + strand, within Psyr_1275at 1440.239 kb on + strand, within Psyr_1275at 1440.239 kb on + strand, within Psyr_1275at 1440.240 kb on - strand, within Psyr_1275at 1440.240 kb on - strand, within Psyr_1275at 1440.240 kb on - strand, within Psyr_1275at 1440.240 kb on - strand, within Psyr_1275at 1440.263 kb on + strand, within Psyr_1275at 1440.264 kb on - strand, within Psyr_1275at 1440.424 kb on + strandat 1440.424 kb on + strandat 1440.424 kb on + strandat 1440.425 kb on - strandat 1440.425 kb on - strandat 1440.425 kb on - strandat 1440.425 kb on - strandat 1440.841 kb on + strandat 1440.864 kb on + strandat 1441.170 kb on + strandat 1441.193 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic, grinding recovery; Green bean
remove
1,439,323 + Psyr_1273 0.54 -1.6
1,439,323 + Psyr_1273 0.54 -1.0
1,439,323 + Psyr_1273 0.54 +1.2
1,439,323 + Psyr_1273 0.54 -2.6
1,439,324 - Psyr_1273 0.54 +0.6
1,439,464 + Psyr_1273 0.78 +0.7
1,439,464 + Psyr_1273 0.78 +0.7
1,439,465 - Psyr_1273 0.78 -0.8
1,439,477 - Psyr_1273 0.80 -2.8
1,439,492 - Psyr_1273 0.83 +2.7
1,439,492 - Psyr_1273 0.83 -2.2
1,439,531 + Psyr_1273 0.89 +0.5
1,439,545 + -1.5
1,439,546 - +1.6
1,439,546 - +0.1
1,439,625 + -2.9
1,439,625 + +0.0
1,439,625 + -0.6
1,439,625 + -1.4
1,439,626 - -2.2
1,439,626 - +0.9
1,439,626 - +1.1
1,439,626 - -0.1
1,439,626 - +1.8
1,439,626 - +2.6
1,439,626 - +0.1
1,439,626 - -2.8
1,439,626 - -1.7
1,439,626 - -1.2
1,439,626 - -2.3
1,439,626 - +1.4
1,439,626 - -2.2
1,439,626 - +0.0
1,439,626 - +1.6
1,439,643 - +2.1
1,439,942 - Psyr_1274 0.53 +0.9
1,439,995 + Psyr_1274 0.63 +0.1
1,439,996 - Psyr_1274 0.63 -1.0
1,439,996 - Psyr_1274 0.63 -1.2
1,439,996 - Psyr_1274 0.63 +1.9
1,439,996 - Psyr_1274 0.63 +0.3
1,440,137 - -2.4
1,440,137 - -1.8
1,440,137 - +0.0
1,440,140 + -1.2
1,440,140 + -1.0
1,440,140 + -0.4
1,440,141 - -0.9
1,440,141 - -2.0
1,440,141 - +1.8
1,440,141 - -1.3
1,440,141 - +1.7
1,440,141 - -0.3
1,440,141 - +1.2
1,440,141 - +0.7
1,440,141 - -2.1
1,440,239 + Psyr_1275 0.23 -0.6
1,440,239 + Psyr_1275 0.23 -1.8
1,440,239 + Psyr_1275 0.23 -2.8
1,440,240 - Psyr_1275 0.23 -2.4
1,440,240 - Psyr_1275 0.23 +0.0
1,440,240 - Psyr_1275 0.23 +0.0
1,440,240 - Psyr_1275 0.23 -0.7
1,440,263 + Psyr_1275 0.34 -1.1
1,440,264 - Psyr_1275 0.34 -1.8
1,440,424 + -1.5
1,440,424 + +1.5
1,440,424 + -2.1
1,440,425 - +1.5
1,440,425 - -0.0
1,440,425 - +1.6
1,440,425 - +1.6
1,440,841 + -3.1
1,440,864 + +1.1
1,441,170 + +2.2
1,441,193 + -0.2

Or see this region's nucleotide sequence