Experiment: apoplastic, grinding recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1273 and Psyr_1274 are separated by 69 nucleotides Psyr_1274 and Psyr_1275 overlap by 1 nucleotides
Psyr_1273: Psyr_1273 - NUDIX hydrolase, at 1,438,999 to 1,439,595
_1273
Psyr_1274: Psyr_1274 - transferase hexapeptide repeat protein, at 1,439,665 to 1,440,189
_1274
Psyr_1275: Psyr_1275 - Protein of unknown function DUF1289, at 1,440,189 to 1,440,407
_1275
Position (kb)
1440
1441 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1439.323 kb on + strand, within Psyr_1273 at 1439.323 kb on + strand, within Psyr_1273 at 1439.323 kb on + strand, within Psyr_1273 at 1439.323 kb on + strand, within Psyr_1273 at 1439.324 kb on - strand, within Psyr_1273 at 1439.464 kb on + strand, within Psyr_1273 at 1439.464 kb on + strand, within Psyr_1273 at 1439.465 kb on - strand, within Psyr_1273 at 1439.477 kb on - strand, within Psyr_1273 at 1439.492 kb on - strand, within Psyr_1273 at 1439.492 kb on - strand, within Psyr_1273 at 1439.531 kb on + strand, within Psyr_1273 at 1439.545 kb on + strand at 1439.546 kb on - strand at 1439.546 kb on - strand at 1439.625 kb on + strand at 1439.625 kb on + strand at 1439.625 kb on + strand at 1439.625 kb on + strand at 1439.626 kb on - strand at 1439.626 kb on - strand at 1439.626 kb on - strand at 1439.626 kb on - strand at 1439.626 kb on - strand at 1439.626 kb on - strand at 1439.626 kb on - strand at 1439.626 kb on - strand at 1439.626 kb on - strand at 1439.626 kb on - strand at 1439.626 kb on - strand at 1439.626 kb on - strand at 1439.626 kb on - strand at 1439.626 kb on - strand at 1439.626 kb on - strand at 1439.643 kb on - strand at 1439.942 kb on - strand, within Psyr_1274 at 1439.995 kb on + strand, within Psyr_1274 at 1439.996 kb on - strand, within Psyr_1274 at 1439.996 kb on - strand, within Psyr_1274 at 1439.996 kb on - strand, within Psyr_1274 at 1439.996 kb on - strand, within Psyr_1274 at 1440.137 kb on - strand at 1440.137 kb on - strand at 1440.137 kb on - strand at 1440.140 kb on + strand at 1440.140 kb on + strand at 1440.140 kb on + strand at 1440.141 kb on - strand at 1440.141 kb on - strand at 1440.141 kb on - strand at 1440.141 kb on - strand at 1440.141 kb on - strand at 1440.141 kb on - strand at 1440.141 kb on - strand at 1440.141 kb on - strand at 1440.141 kb on - strand at 1440.239 kb on + strand, within Psyr_1275 at 1440.239 kb on + strand, within Psyr_1275 at 1440.239 kb on + strand, within Psyr_1275 at 1440.240 kb on - strand, within Psyr_1275 at 1440.240 kb on - strand, within Psyr_1275 at 1440.240 kb on - strand, within Psyr_1275 at 1440.240 kb on - strand, within Psyr_1275 at 1440.263 kb on + strand, within Psyr_1275 at 1440.264 kb on - strand, within Psyr_1275 at 1440.424 kb on + strand at 1440.424 kb on + strand at 1440.424 kb on + strand at 1440.425 kb on - strand at 1440.425 kb on - strand at 1440.425 kb on - strand at 1440.425 kb on - strand at 1440.841 kb on + strand at 1440.864 kb on + strand at 1441.170 kb on + strand at 1441.193 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, grinding recovery; Green bean remove 1,439,323 + Psyr_1273 0.54 -1.6 1,439,323 + Psyr_1273 0.54 -1.0 1,439,323 + Psyr_1273 0.54 +1.2 1,439,323 + Psyr_1273 0.54 -2.6 1,439,324 - Psyr_1273 0.54 +0.6 1,439,464 + Psyr_1273 0.78 +0.7 1,439,464 + Psyr_1273 0.78 +0.7 1,439,465 - Psyr_1273 0.78 -0.8 1,439,477 - Psyr_1273 0.80 -2.8 1,439,492 - Psyr_1273 0.83 +2.7 1,439,492 - Psyr_1273 0.83 -2.2 1,439,531 + Psyr_1273 0.89 +0.5 1,439,545 + -1.5 1,439,546 - +1.6 1,439,546 - +0.1 1,439,625 + -2.9 1,439,625 + +0.0 1,439,625 + -0.6 1,439,625 + -1.4 1,439,626 - -2.2 1,439,626 - +0.9 1,439,626 - +1.1 1,439,626 - -0.1 1,439,626 - +1.8 1,439,626 - +2.6 1,439,626 - +0.1 1,439,626 - -2.8 1,439,626 - -1.7 1,439,626 - -1.2 1,439,626 - -2.3 1,439,626 - +1.4 1,439,626 - -2.2 1,439,626 - +0.0 1,439,626 - +1.6 1,439,643 - +2.1 1,439,942 - Psyr_1274 0.53 +0.9 1,439,995 + Psyr_1274 0.63 +0.1 1,439,996 - Psyr_1274 0.63 -1.0 1,439,996 - Psyr_1274 0.63 -1.2 1,439,996 - Psyr_1274 0.63 +1.9 1,439,996 - Psyr_1274 0.63 +0.3 1,440,137 - -2.4 1,440,137 - -1.8 1,440,137 - +0.0 1,440,140 + -1.2 1,440,140 + -1.0 1,440,140 + -0.4 1,440,141 - -0.9 1,440,141 - -2.0 1,440,141 - +1.8 1,440,141 - -1.3 1,440,141 - +1.7 1,440,141 - -0.3 1,440,141 - +1.2 1,440,141 - +0.7 1,440,141 - -2.1 1,440,239 + Psyr_1275 0.23 -0.6 1,440,239 + Psyr_1275 0.23 -1.8 1,440,239 + Psyr_1275 0.23 -2.8 1,440,240 - Psyr_1275 0.23 -2.4 1,440,240 - Psyr_1275 0.23 +0.0 1,440,240 - Psyr_1275 0.23 +0.0 1,440,240 - Psyr_1275 0.23 -0.7 1,440,263 + Psyr_1275 0.34 -1.1 1,440,264 - Psyr_1275 0.34 -1.8 1,440,424 + -1.5 1,440,424 + +1.5 1,440,424 + -2.1 1,440,425 - +1.5 1,440,425 - -0.0 1,440,425 - +1.6 1,440,425 - +1.6 1,440,841 + -3.1 1,440,864 + +1.1 1,441,170 + +2.2 1,441,193 + -0.2
Or see this region's nucleotide sequence