Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1034

Experiment: apoplastic, grinding recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, grinding recovery; Green bean
1,167,535	-				-1.1
1,167,613	+				-2.7
1,167,634	+				-1.9
1,167,634	+				-0.6
1,167,636	+				-1.9
1,167,636	+				-3.0
1,167,637	-				-2.9
1,167,637	-				-1.4
1,167,637	-				-0.4
1,167,637	-				+1.1
1,167,642	-				-0.7
1,167,651	+				+3.5
1,167,651	+				-0.1
1,167,652	-				-0.8
1,167,652	-				+0.6
1,167,652	-				+0.6
1,167,681	+				-2.9
1,167,833	+		Psyr_1033	0.35	-0.5
1,167,833	+		Psyr_1033	0.35	-0.2
1,167,833	+		Psyr_1033	0.35	-0.1
1,167,833	+		Psyr_1033	0.35	-2.1
1,167,833	+		Psyr_1033	0.35	-1.3
1,167,833	+		Psyr_1033	0.35	+1.2
1,167,833	+		Psyr_1033	0.35	-0.4
1,167,834	-		Psyr_1033	0.36	-0.6
1,167,834	-		Psyr_1033	0.36	-3.4
1,168,023	-				-0.3
1,168,023	-				+1.0
1,168,081	+				-2.4
1,168,123	+				-0.7
1,168,246	+				-1.4
1,168,247	-				-0.6
1,168,314	+				-2.9
1,168,314	+				-0.1
1,168,315	-				+1.0
1,168,319	+				+0.1
1,168,319	+				-1.9
1,168,319	+				+0.4
1,168,320	-				-3.3
1,168,320	-				-1.7
1,168,320	-				-0.2
1,168,338	+				-0.8
1,168,367	+				-0.4
1,168,367	+				+0.4
1,168,367	+				-0.4
1,168,367	+				+0.3
1,168,367	+				-0.3
1,168,368	-				+0.2
1,168,368	-				+1.6
1,168,368	-				+1.9
1,168,437	-				-2.5
1,168,442	+				-2.9
1,168,442	+				-0.6
1,168,443	-				-2.9
1,168,443	-				-2.4
1,168,443	-				+2.6
1,168,618	+		Psyr_1034	0.41	+0.9
1,168,618	+		Psyr_1034	0.41	+0.0
1,168,619	-		Psyr_1034	0.41	+0.4
1,168,619	-		Psyr_1034	0.41	-2.4
1,168,619	-		Psyr_1034	0.41	+1.6
1,168,649	-		Psyr_1034	0.47	+0.6
1,168,687	+		Psyr_1034	0.55	-2.8
1,168,687	+		Psyr_1034	0.55	-1.5
1,168,687	+		Psyr_1034	0.55	-0.1
1,168,687	+		Psyr_1034	0.55	-0.1
1,168,687	+		Psyr_1034	0.55	+0.8
1,168,687	+		Psyr_1034	0.55	+0.6
1,168,687	+		Psyr_1034	0.55	+0.1
1,168,687	+		Psyr_1034	0.55	-1.0
1,168,687	+		Psyr_1034	0.55	+2.4
1,168,687	+		Psyr_1034	0.55	-1.2
1,168,687	+		Psyr_1034	0.55	-0.7
1,168,687	+		Psyr_1034	0.55	-0.3
1,168,687	+		Psyr_1034	0.55	+0.0
1,168,687	+		Psyr_1034	0.55	-0.7
1,168,687	+		Psyr_1034	0.55	-1.4
1,168,687	+		Psyr_1034	0.55	-0.2
1,168,688	-		Psyr_1034	0.55	+1.7
1,168,688	-		Psyr_1034	0.55	+1.0
1,168,688	-		Psyr_1034	0.55	-0.4
1,168,688	-		Psyr_1034	0.55	-2.6
1,168,688	-		Psyr_1034	0.55	-1.7
1,168,688	-		Psyr_1034	0.55	-1.2
1,168,688	-		Psyr_1034	0.55	+0.3
1,168,688	-		Psyr_1034	0.55	+0.7
1,168,688	-		Psyr_1034	0.55	-3.3
1,168,688	-		Psyr_1034	0.55	-0.2
1,168,688	-		Psyr_1034	0.55	+1.1
1,168,688	-		Psyr_1034	0.55	-0.7
1,168,765	+		Psyr_1034	0.71	-1.4
1,168,765	+		Psyr_1034	0.71	+1.9
1,168,765	+		Psyr_1034	0.71	-1.4
1,168,765	+		Psyr_1034	0.71	+1.6
1,168,766	-		Psyr_1034	0.71	+0.1
1,168,766	-		Psyr_1034	0.71	-1.4
1,168,766	-		Psyr_1034	0.71	-2.6
1,168,766	-		Psyr_1034	0.71	-3.8
1,168,766	-		Psyr_1034	0.71	-0.7
1,168,766	-		Psyr_1034	0.71	+0.7
1,168,766	-		Psyr_1034	0.71	+1.4
1,168,766	-		Psyr_1034	0.71	+1.4
1,168,816	+		Psyr_1034	0.82	-1.7
1,168,817	-		Psyr_1034	0.82	-2.1
1,168,825	+		Psyr_1034	0.83	-2.1
1,168,825	+		Psyr_1034	0.83	+1.7
1,168,825	+		Psyr_1034	0.83	+1.9
1,168,825	+		Psyr_1034	0.83	-0.8
1,168,825	+		Psyr_1034	0.83	-0.8
1,168,825	+		Psyr_1034	0.83	-1.7
1,168,826	-		Psyr_1034	0.84	-2.7
1,168,826	-		Psyr_1034	0.84	+1.9
1,168,826	-		Psyr_1034	0.84	-1.6
1,168,831	+		Psyr_1034	0.85	-2.9
1,168,832	-		Psyr_1034	0.85	-1.5
1,168,908	+				-2.4
1,168,908	+				-2.3
1,168,908	+				-1.1
1,168,908	+				-1.7
1,168,908	+				-3.5
1,168,909	-				+0.6
1,168,909	-				+3.2
1,168,952	+				+0.0
1,168,952	+				+1.8
1,168,954	+				-2.7
1,168,954	+				-1.8
1,168,954	+				+2.6
1,168,955	-				+0.7
1,168,955	-				-1.3
1,169,034	+		Psyr_1035	0.20	+2.6
1,169,034	+		Psyr_1035	0.20	+0.2
1,169,034	+		Psyr_1035	0.20	-3.2
1,169,034	+		Psyr_1035	0.20	+0.8
1,169,034	+		Psyr_1035	0.20	-0.4
1,169,034	+		Psyr_1035	0.20	-3.1
1,169,034	+		Psyr_1035	0.20	-3.2
1,169,035	-		Psyr_1035	0.20	+0.5
1,169,035	-		Psyr_1035	0.20	-0.1
1,169,035	-		Psyr_1035	0.20	+1.6
1,169,035	-		Psyr_1035	0.20	-0.5
1,169,035	-		Psyr_1035	0.20	+2.4
1,169,035	-		Psyr_1035	0.20	-1.6
1,169,035	-		Psyr_1035	0.20	-1.3
1,169,035	-		Psyr_1035	0.20	+1.4
1,169,120	+		Psyr_1035	0.46	-2.6
1,169,120	+		Psyr_1035	0.46	-2.1
1,169,120	+		Psyr_1035	0.46	+0.8
1,169,120	+		Psyr_1035	0.46	-2.0
1,169,120	+		Psyr_1035	0.46	-0.3
1,169,120	+		Psyr_1035	0.46	+1.0
1,169,121	-		Psyr_1035	0.46	+0.6
1,169,121	-		Psyr_1035	0.46	-2.8
1,169,121	-		Psyr_1035	0.46	+1.3
1,169,121	-		Psyr_1035	0.46	+0.8
1,169,121	-		Psyr_1035	0.46	-0.7
1,169,121	-		Psyr_1035	0.46	-2.2
1,169,121	-		Psyr_1035	0.46	+0.1
1,169,124	+		Psyr_1035	0.47	-1.2
1,169,124	+		Psyr_1035	0.47	+1.6
1,169,124	+		Psyr_1035	0.47	-1.6
1,169,124	+		Psyr_1035	0.47	+0.3
1,169,125	-		Psyr_1035	0.47	+0.2
1,169,125	-		Psyr_1035	0.47	+0.4
1,169,125	-		Psyr_1035	0.47	-0.5
1,169,125	-		Psyr_1035	0.47	-0.2
1,169,125	-		Psyr_1035	0.47	+1.6
1,169,125	-		Psyr_1035	0.47	+2.0
1,169,125	-		Psyr_1035	0.47	+1.0
1,169,125	-		Psyr_1035	0.47	+0.1
1,169,125	-		Psyr_1035	0.47	+1.3
1,169,199	+		Psyr_1035	0.70	+2.1
1,169,199	+		Psyr_1035	0.70	-0.3
1,169,199	+		Psyr_1035	0.70	-3.1
1,169,199	+		Psyr_1035	0.70	+0.7
1,169,199	+		Psyr_1035	0.70	-2.1
1,169,200	-		Psyr_1035	0.70	-1.0
1,169,200	-		Psyr_1035	0.70	+0.7
1,169,200	-		Psyr_1035	0.70	-0.4
1,169,200	-		Psyr_1035	0.70	+2.0
1,169,231	+		Psyr_1035	0.79	+1.2
1,169,291	+				-1.4
1,169,291	+				+0.1
1,169,291	+				+1.7
1,169,291	+				+0.9
1,169,291	+				-2.4
1,169,291	+				-0.7
1,169,291	+				-1.9
1,169,291	+				-2.1
1,169,291	+				+1.2
1,169,291	+				-2.6
1,169,292	-				+1.6
1,169,292	-				+0.4
1,169,292	-				-0.8
1,169,292	-				+1.6
1,169,295	+				-0.2
1,169,295	+				-2.2
1,169,295	+				-1.6
1,169,295	+				-1.0
1,169,295	+				-1.8
1,169,295	+				-0.3
1,169,295	+				+1.0
1,169,295	+				+0.5
1,169,295	+				+0.5
1,169,295	+				-2.2
1,169,295	+				+1.3
1,169,295	+				-0.8
1,169,295	+				-1.1
1,169,295	+				-0.3
1,169,296	-				-2.9
1,169,296	-				-1.2
1,169,296	-				+0.2
1,169,296	-				-1.4
1,169,296	-				-0.7
1,169,296	-				+0.4
1,169,296	-				-0.4
1,169,296	-				+1.0
1,169,296	-				+0.7
1,169,296	-				+0.0
1,169,296	-				+0.1
1,169,296	-				+1.8
1,169,296	-				-2.7
1,169,296	-				-1.0
1,169,384	+				+1.6
1,169,384	+				-1.4
1,169,385	-				-0.5
1,169,385	-				+0.8
1,169,385	-				+2.4
1,169,385	-				+1.4
1,169,385	-				-2.6
1,169,385	-				-2.6
1,169,394	+				-1.5
1,169,394	+				+1.3
1,169,394	+				+1.4
1,169,394	+				-1.3
1,169,394	+				+1.2
1,169,394	+				+1.4
1,169,394	+				-0.5
1,169,394	+				+0.3
1,169,394	+				+1.8
1,169,394	+				-1.6
1,169,394	+				+0.0
1,169,394	+				+0.7
1,169,394	+				-3.3
1,169,394	+				+1.6
1,169,394	+				+0.9
1,169,394	+				-0.2
1,169,394	+				-0.8
1,169,394	+				-0.1
1,169,394	+				+0.3
1,169,394	+				+0.9
1,169,394	+				-0.1
1,169,394	+				-0.3
1,169,394	+				-2.7
1,169,394	+				-0.7
1,169,394	+				-0.3
1,169,395	-				-1.9
1,169,395	-				+0.7
1,169,395	-				+1.1
1,169,395	-				-2.5
1,169,395	-				-0.2
1,169,395	-				-1.9
1,169,395	-				-1.0
1,169,395	-				+0.7
1,169,395	-				+1.2
1,169,395	-				+0.4
1,169,395	-				+0.4
1,169,395	-				-0.1
1,169,395	-				+0.6
1,169,395	-				+0.4
1,169,401	-				-0.7
1,169,401	-				-1.6
1,169,401	-				+0.6
1,169,433	+				+1.3
1,169,433	+				-2.7
1,169,434	-				-0.2
1,169,437	+				+1.0
1,169,437	+				+1.2
1,169,437	+				-0.1
1,169,438	-				+0.7
1,169,438	-				+1.6
1,169,438	-				-1.0
1,169,451	-				+0.0
1,169,504	+				-0.7
1,169,504	+				-0.7
1,169,504	+				+0.4
1,169,504	+				-1.3
1,169,504	+				-0.5
1,169,504	+				+2.6
1,169,504	+				+0.1
1,169,504	+				+0.9
1,169,505	-				-0.6
1,169,505	-				+2.2
1,169,505	-				+1.5
1,169,505	-				-1.7
1,169,505	-				+0.7
1,169,505	-				+2.8
1,169,505	-				-1.1
1,169,717	+		Psyr_1036	0.46	+2.2