Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0934

Experiment: apoplastic, grinding recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, grinding recovery; Green bean
1,067,617	-		Psyr_0933	0.45	+1.0
1,067,617	-		Psyr_0933	0.45	-1.7
1,067,627	+		Psyr_0933	0.45	-2.3
1,067,627	+		Psyr_0933	0.45	-1.8
1,067,627	+		Psyr_0933	0.45	+1.6
1,067,628	-		Psyr_0933	0.45	+0.7
1,067,628	-		Psyr_0933	0.45	+0.0
1,067,705	+		Psyr_0933	0.50	+0.6
1,067,711	+		Psyr_0933	0.50	+0.4
1,067,711	+		Psyr_0933	0.50	+1.4
1,067,746	-		Psyr_0933	0.52	-2.4
1,067,781	-		Psyr_0933	0.54	+0.5
1,067,822	+		Psyr_0933	0.56	+0.5
1,067,822	+		Psyr_0933	0.56	-1.9
1,067,822	+		Psyr_0933	0.56	-2.0
1,067,822	+		Psyr_0933	0.56	-1.7
1,067,822	+		Psyr_0933	0.56	-2.4
1,067,822	+		Psyr_0933	0.56	+1.4
1,067,822	+		Psyr_0933	0.56	+1.1
1,067,822	+		Psyr_0933	0.56	-0.2
1,067,822	+		Psyr_0933	0.56	-0.3
1,067,822	+		Psyr_0933	0.56	-1.6
1,067,822	+		Psyr_0933	0.56	-0.4
1,067,822	+		Psyr_0933	0.56	-2.0
1,067,822	+		Psyr_0933	0.56	+1.4
1,067,823	-		Psyr_0933	0.56	+0.1
1,067,823	-		Psyr_0933	0.56	+1.4
1,067,823	-		Psyr_0933	0.56	-0.2
1,067,823	-		Psyr_0933	0.56	-3.7
1,067,823	-		Psyr_0933	0.56	+0.0
1,067,823	-		Psyr_0933	0.56	-0.6
1,067,823	-		Psyr_0933	0.56	-1.2
1,067,823	-		Psyr_0933	0.56	+0.4
1,067,823	-		Psyr_0933	0.56	+0.9
1,067,823	-		Psyr_0933	0.56	-2.6
1,068,032	+		Psyr_0933	0.68	-1.0
1,068,032	+		Psyr_0933	0.68	-1.2
1,068,060	+		Psyr_0933	0.70	+1.0
1,068,060	+		Psyr_0933	0.70	+1.0
1,068,275	+		Psyr_0933	0.82	+0.4
1,068,275	+		Psyr_0933	0.82	+0.0
1,068,275	+		Psyr_0933	0.82	+0.3
1,068,275	+		Psyr_0933	0.82	-3.3
1,068,275	+		Psyr_0933	0.82	-2.1
1,068,275	+		Psyr_0933	0.82	-0.3
1,068,275	+		Psyr_0933	0.82	-0.3
1,068,275	+		Psyr_0933	0.82	+0.4
1,068,275	+		Psyr_0933	0.82	-1.7
1,068,275	+		Psyr_0933	0.82	+0.9
1,068,275	+		Psyr_0933	0.82	+1.4
1,068,275	+		Psyr_0933	0.82	+0.6
1,068,276	-		Psyr_0933	0.82	+1.6
1,068,276	-		Psyr_0933	0.82	-0.1
1,068,276	-		Psyr_0933	0.82	+0.6
1,068,276	-		Psyr_0933	0.82	-1.2
1,068,276	-		Psyr_0933	0.82	-1.4
1,068,276	-		Psyr_0933	0.82	-3.1
1,068,276	-		Psyr_0933	0.82	-1.9
1,068,276	-		Psyr_0933	0.82	+0.1
1,068,276	-		Psyr_0933	0.82	+1.2
1,068,276	-		Psyr_0933	0.82	+0.5
1,068,276	-		Psyr_0933	0.82	-0.7
1,068,276	-		Psyr_0933	0.82	-1.2
1,068,276	-		Psyr_0933	0.82	+1.4
1,068,276	-		Psyr_0933	0.82	+0.5
1,068,279	+		Psyr_0933	0.82	-1.2
1,068,279	+		Psyr_0933	0.82	-2.7
1,068,279	+		Psyr_0933	0.82	+0.0
1,068,279	+		Psyr_0933	0.82	-1.0
1,068,279	+		Psyr_0933	0.82	+1.6
1,068,279	+		Psyr_0933	0.82	+0.1
1,068,279	+		Psyr_0933	0.82	+0.1
1,068,280	-		Psyr_0933	0.82	+0.8
1,068,280	-		Psyr_0933	0.82	+2.2
1,068,280	-		Psyr_0933	0.82	+0.9
1,068,280	-		Psyr_0933	0.82	+1.2
1,068,280	-		Psyr_0933	0.82	+0.5
1,068,280	-		Psyr_0933	0.82	+1.8
1,068,280	-		Psyr_0933	0.82	-3.4
1,068,350	+		Psyr_0933	0.86	+2.9
1,068,351	-		Psyr_0933	0.86	+1.6
1,068,371	+		Psyr_0933	0.87	+0.7
1,068,371	+		Psyr_0933	0.87	+1.4
1,068,417	-				-2.1
1,068,417	-				+0.3
1,068,471	+				+1.5
1,068,612	+				-2.5
1,068,612	+				-0.3
1,068,612	+				+0.3
1,068,613	-				-1.9
1,068,613	-				-0.1
1,068,696	-				+1.6
1,068,696	-				+0.8
1,068,720	+				-3.2
1,068,758	-		Psyr_0934	0.12	-0.7
1,068,787	+		Psyr_0934	0.14	+1.0
1,068,861	+		Psyr_0934	0.19	-2.9
1,068,861	+		Psyr_0934	0.19	-1.1
1,068,881	+		Psyr_0934	0.21	+1.6
1,068,881	+		Psyr_0934	0.21	+2.0
1,068,925	-		Psyr_0934	0.24	+0.8
1,069,033	-		Psyr_0934	0.32	+0.8
1,069,043	+		Psyr_0934	0.33	-1.1
1,069,061	+		Psyr_0934	0.35	-3.1
1,069,062	-		Psyr_0934	0.35	+1.0
1,069,062	-		Psyr_0934	0.35	+0.7
1,069,062	-		Psyr_0934	0.35	+1.1
1,069,097	+		Psyr_0934	0.37	-1.2
1,069,098	-		Psyr_0934	0.37	+1.4
1,069,190	-		Psyr_0934	0.44	-1.0
1,069,331	+		Psyr_0934	0.55	+1.3
1,069,331	+		Psyr_0934	0.55	+1.1
1,069,332	-		Psyr_0934	0.55	+2.4
1,069,403	+		Psyr_0934	0.60	-3.1
1,069,403	+		Psyr_0934	0.60	+1.6
1,069,404	-		Psyr_0934	0.60	+0.0
1,069,404	-		Psyr_0934	0.60	-1.9
1,069,412	+		Psyr_0934	0.61	+0.4
1,069,412	+		Psyr_0934	0.61	-2.0
1,069,412	+		Psyr_0934	0.61	+0.6
1,069,412	+		Psyr_0934	0.61	+1.9
1,069,412	+		Psyr_0934	0.61	+1.6
1,069,412	+		Psyr_0934	0.61	-1.9
1,069,412	+		Psyr_0934	0.61	+2.3
1,069,413	-		Psyr_0934	0.61	+1.3
1,069,413	-		Psyr_0934	0.61	+0.4
1,069,413	-		Psyr_0934	0.61	+1.4
1,069,413	-		Psyr_0934	0.61	-1.0
1,069,413	-		Psyr_0934	0.61	-0.1
1,069,413	-		Psyr_0934	0.61	-0.7
1,069,424	+		Psyr_0934	0.62	-2.2
1,069,424	+		Psyr_0934	0.62	+0.3
1,069,424	+		Psyr_0934	0.62	+0.1
1,069,424	+		Psyr_0934	0.62	-2.3
1,069,425	-		Psyr_0934	0.62	+1.8
1,069,505	+		Psyr_0934	0.68	+2.6
1,069,505	+		Psyr_0934	0.68	+1.8
1,069,524	+		Psyr_0934	0.70	-1.4
1,069,524	+		Psyr_0934	0.70	+0.8
1,069,680	+		Psyr_0934	0.81	+0.7
1,069,680	+		Psyr_0934	0.81	-2.6
1,069,713	+		Psyr_0934	0.84	-1.6
1,069,713	+		Psyr_0934	0.84	+0.0
1,069,713	+		Psyr_0934	0.84	-1.0
1,069,714	-		Psyr_0934	0.84	+2.2
1,069,714	-		Psyr_0934	0.84	+0.9
1,069,714	-		Psyr_0934	0.84	+2.6
1,069,753	+		Psyr_0934	0.87	+1.7
1,069,754	-		Psyr_0934	0.87	+0.6
1,069,754	-		Psyr_0934	0.87	-0.0
1,069,756	+		Psyr_0934	0.87	+1.2
1,069,874	-				-1.2
1,069,874	-				-0.7
1,069,898	+				-2.0
1,069,898	+				-1.0
1,069,898	+				-1.0
1,069,898	+				+1.2
1,069,898	+				-1.4
1,069,899	-				+0.9
1,069,899	-				+1.4
1,069,899	-				+0.3
1,069,899	-				+2.6
1,069,899	-				-0.1
1,069,899	-				+2.3
1,069,899	-				+1.8
1,069,899	-				-1.6
1,069,899	-				+1.1
1,069,899	-				-2.9
1,069,902	+				+3.8
1,070,035	-				+1.1
1,070,035	-				-1.2
1,070,164	+		Psyr_0935	0.17	-1.5
1,070,164	+		Psyr_0935	0.17	+0.0
1,070,164	+		Psyr_0935	0.17	+0.4
1,070,164	+		Psyr_0935	0.17	+2.6
1,070,164	+		Psyr_0935	0.17	-2.8
1,070,165	-		Psyr_0935	0.17	+1.6
1,070,165	-		Psyr_0935	0.17	+0.6
1,070,165	-		Psyr_0935	0.17	-0.7
1,070,182	-		Psyr_0935	0.18	+0.2
1,070,182	-		Psyr_0935	0.18	-0.9
1,070,182	-		Psyr_0935	0.18	+1.7
1,070,182	-		Psyr_0935	0.18	+1.8
1,070,223	+		Psyr_0935	0.21	-0.4
1,070,223	+		Psyr_0935	0.21	-0.7
1,070,223	+		Psyr_0935	0.21	+1.1
1,070,223	+		Psyr_0935	0.21	-2.3
1,070,223	+		Psyr_0935	0.21	+1.2
1,070,223	+		Psyr_0935	0.21	+0.6
1,070,223	+		Psyr_0935	0.21	-1.5
1,070,223	+		Psyr_0935	0.21	-2.7
1,070,223	+		Psyr_0935	0.21	+0.0
1,070,223	+		Psyr_0935	0.21	+0.5
1,070,223	+		Psyr_0935	0.21	+2.7
1,070,223	+		Psyr_0935	0.21	-1.4
1,070,224	-		Psyr_0935	0.21	+1.4
1,070,224	-		Psyr_0935	0.21	+0.8
1,070,224	-		Psyr_0935	0.21	+0.0
1,070,224	-		Psyr_0935	0.21	+1.4
1,070,224	-		Psyr_0935	0.21	-0.3
1,070,224	-		Psyr_0935	0.21	-1.4
1,070,224	-		Psyr_0935	0.21	+1.3
1,070,224	-		Psyr_0935	0.21	+2.6
1,070,224	-		Psyr_0935	0.21	-1.7
1,070,225	+		Psyr_0935	0.21	+0.8
1,070,225	+		Psyr_0935	0.21	+0.4
1,070,226	-		Psyr_0935	0.21	+0.6
1,070,239	-		Psyr_0935	0.22	-2.6
1,070,239	-		Psyr_0935	0.22	-0.9
1,070,259	+		Psyr_0935	0.24	-1.4
1,070,265	+		Psyr_0935	0.24	+0.7
1,070,265	+		Psyr_0935	0.24	-1.9
1,070,265	+		Psyr_0935	0.24	+1.3
1,070,265	+		Psyr_0935	0.24	-2.6
1,070,265	+		Psyr_0935	0.24	-1.4
1,070,265	+		Psyr_0935	0.24	-2.9
1,070,266	-		Psyr_0935	0.24	+2.3
1,070,266	-		Psyr_0935	0.24	-1.7
1,070,266	-		Psyr_0935	0.24	-2.0
1,070,289	+		Psyr_0935	0.26	+2.8
1,070,289	+		Psyr_0935	0.26	-2.0
1,070,377	-		Psyr_0935	0.32	-1.4
1,070,469	+		Psyr_0935	0.39	-2.2
1,070,469	+		Psyr_0935	0.39	+4.4
1,070,470	-		Psyr_0935	0.39	-0.3
1,070,470	-		Psyr_0935	0.39	-0.2
1,070,470	-		Psyr_0935	0.39	-1.9
1,070,753	-		Psyr_0935	0.59	+0.6
1,070,856	+		Psyr_0935	0.66	+0.4
1,070,856	+		Psyr_0935	0.66	-0.4
1,070,856	+		Psyr_0935	0.66	+0.3
1,070,856	+		Psyr_0935	0.66	-0.7
1,070,856	+		Psyr_0935	0.66	-1.9
1,070,856	+		Psyr_0935	0.66	+0.1
1,070,856	+		Psyr_0935	0.66	-2.6
1,070,856	+		Psyr_0935	0.66	+0.4
1,070,856	+		Psyr_0935	0.66	-2.4
1,070,856	+		Psyr_0935	0.66	+1.5
1,070,856	+		Psyr_0935	0.66	-0.2
1,070,856	+		Psyr_0935	0.66	-3.5
1,070,856	+		Psyr_0935	0.66	-3.6
1,070,856	+		Psyr_0935	0.66	-0.3
1,070,856	+		Psyr_0935	0.66	+1.9
1,070,856	+		Psyr_0935	0.66	+0.5
1,070,856	+		Psyr_0935	0.66	-2.9
1,070,856	+		Psyr_0935	0.66	+1.3
1,070,856	+		Psyr_0935	0.66	-3.3
1,070,856	+		Psyr_0935	0.66	-0.1
1,070,856	+		Psyr_0935	0.66	+0.2
1,070,857	-		Psyr_0935	0.66	-1.0
1,070,857	-		Psyr_0935	0.66	+0.8
1,070,857	-		Psyr_0935	0.66	-2.5
1,070,857	-		Psyr_0935	0.66	+1.6
1,070,857	-		Psyr_0935	0.66	-0.1
1,070,857	-		Psyr_0935	0.66	-1.2
1,070,857	-		Psyr_0935	0.66	+1.8
1,070,857	-		Psyr_0935	0.66	-1.6
1,070,857	-		Psyr_0935	0.66	+2.5
1,070,857	-		Psyr_0935	0.66	+1.1
1,070,857	-		Psyr_0935	0.66	-0.2
1,070,857	-		Psyr_0935	0.66	-2.0
1,070,857	-		Psyr_0935	0.66	-3.1
1,070,857	-		Psyr_0935	0.66	+1.0
1,070,857	-		Psyr_0935	0.66	-0.7
1,070,857	-		Psyr_0935	0.66	+0.3
1,070,857	-		Psyr_0935	0.66	-1.6
1,070,857	-		Psyr_0935	0.66	-0.5
1,070,857	-		Psyr_0935	0.66	-0.7
1,070,857	-		Psyr_0935	0.66	-1.6
1,070,857	-		Psyr_0935	0.66	+1.1
1,070,857	-		Psyr_0935	0.66	+0.6
1,070,857	-		Psyr_0935	0.66	+0.6
1,070,857	-		Psyr_0935	0.66	+0.4
1,070,857	-		Psyr_0935	0.66	+0.8
1,070,890	-		Psyr_0935	0.69	+1.6