Experiment: apoplastic, grinding recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0783 and Psyr_0784 are separated by 9 nucleotides Psyr_0784 and Psyr_0785 are separated by 36 nucleotides Psyr_0785 and Psyr_0786 are separated by 30 nucleotides
Psyr_0783: Psyr_0783 - MCP methyltransferase, CheR-type, at 889,493 to 890,302
_0783
Psyr_0784: Psyr_0784 - CheW-like protein, at 890,312 to 890,851
_0784
Psyr_0785: Psyr_0785 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 890,888 to 892,543
_0785
Psyr_0786: Psyr_0786 - CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt, at 892,574 to 894,691
_0786
Position (kb) 890
891
892
893 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 889.948 kb on - strand, within Psyr_0783 at 890.064 kb on + strand, within Psyr_0783 at 890.065 kb on - strand, within Psyr_0783 at 890.065 kb on - strand, within Psyr_0783 at 890.065 kb on - strand, within Psyr_0783 at 890.142 kb on + strand, within Psyr_0783 at 890.143 kb on - strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.152 kb on - strand, within Psyr_0783 at 890.152 kb on - strand, within Psyr_0783 at 890.166 kb on + strand, within Psyr_0783 at 890.166 kb on + strand, within Psyr_0783 at 890.167 kb on - strand, within Psyr_0783 at 890.244 kb on + strand at 890.244 kb on + strand at 890.244 kb on + strand at 890.245 kb on - strand at 890.245 kb on - strand at 890.294 kb on - strand at 890.294 kb on - strand at 890.724 kb on + strand, within Psyr_0784 at 890.724 kb on + strand, within Psyr_0784 at 891.106 kb on + strand, within Psyr_0785 at 891.739 kb on + strand, within Psyr_0785 at 891.740 kb on - strand, within Psyr_0785 at 891.956 kb on + strand, within Psyr_0785 at 891.957 kb on - strand, within Psyr_0785 at 892.219 kb on + strand, within Psyr_0785 at 892.220 kb on - strand, within Psyr_0785 at 892.236 kb on + strand, within Psyr_0785 at 892.237 kb on - strand, within Psyr_0785 at 892.530 kb on + strand at 892.531 kb on - strand at 892.531 kb on - strand at 892.531 kb on - strand at 892.549 kb on + strand at 892.549 kb on + strand at 892.549 kb on + strand at 892.550 kb on - strand at 892.550 kb on - strand at 892.550 kb on - strand at 892.550 kb on - strand at 892.550 kb on - strand at 892.631 kb on + strand at 892.631 kb on + strand at 892.631 kb on + strand at 892.631 kb on + strand at 892.632 kb on - strand at 892.632 kb on - strand at 892.632 kb on - strand at 892.632 kb on - strand at 892.872 kb on + strand, within Psyr_0786 at 892.873 kb on - strand, within Psyr_0786 at 892.909 kb on - strand, within Psyr_0786 at 892.986 kb on + strand, within Psyr_0786 at 892.987 kb on - strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.111 kb on - strand, within Psyr_0786 at 893.111 kb on - strand, within Psyr_0786 at 893.111 kb on - strand, within Psyr_0786 at 893.205 kb on + strand, within Psyr_0786 at 893.206 kb on - strand, within Psyr_0786 at 893.206 kb on - strand, within Psyr_0786 at 893.206 kb on - strand, within Psyr_0786 at 893.337 kb on + strand, within Psyr_0786
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, grinding recovery; Green bean remove 889,948 - Psyr_0783 0.56 +0.6 890,064 + Psyr_0783 0.70 +1.0 890,065 - Psyr_0783 0.71 -0.9 890,065 - Psyr_0783 0.71 +2.3 890,065 - Psyr_0783 0.71 -2.5 890,142 + Psyr_0783 0.80 -1.1 890,143 - Psyr_0783 0.80 -0.7 890,151 + Psyr_0783 0.81 -0.6 890,151 + Psyr_0783 0.81 +1.0 890,151 + Psyr_0783 0.81 -1.2 890,151 + Psyr_0783 0.81 +0.1 890,152 - Psyr_0783 0.81 -1.6 890,152 - Psyr_0783 0.81 -1.0 890,166 + Psyr_0783 0.83 +0.3 890,166 + Psyr_0783 0.83 +0.4 890,167 - Psyr_0783 0.83 +0.4 890,244 + -2.4 890,244 + +1.3 890,244 + +0.7 890,245 - +0.1 890,245 - -0.4 890,294 - -1.0 890,294 - +1.2 890,724 + Psyr_0784 0.76 -0.1 890,724 + Psyr_0784 0.76 -2.1 891,106 + Psyr_0785 0.13 -2.0 891,739 + Psyr_0785 0.51 -1.0 891,740 - Psyr_0785 0.51 -0.2 891,956 + Psyr_0785 0.64 -3.3 891,957 - Psyr_0785 0.65 -0.6 892,219 + Psyr_0785 0.80 -1.1 892,220 - Psyr_0785 0.80 -0.7 892,236 + Psyr_0785 0.81 -0.3 892,237 - Psyr_0785 0.81 -2.3 892,530 + +1.0 892,531 - -0.6 892,531 - -1.2 892,531 - +0.0 892,549 + -3.0 892,549 + -3.3 892,549 + -4.1 892,550 - -0.5 892,550 - -2.0 892,550 - +2.3 892,550 - +0.8 892,550 - +0.6 892,631 + +1.2 892,631 + -0.5 892,631 + +0.2 892,631 + +0.9 892,632 - +3.1 892,632 - -3.5 892,632 - -0.2 892,632 - -1.5 892,872 + Psyr_0786 0.14 -3.4 892,873 - Psyr_0786 0.14 -0.4 892,909 - Psyr_0786 0.16 -2.1 892,986 + Psyr_0786 0.19 -2.6 892,987 - Psyr_0786 0.19 -1.7 893,110 + Psyr_0786 0.25 +0.1 893,110 + Psyr_0786 0.25 -1.1 893,110 + Psyr_0786 0.25 +1.0 893,110 + Psyr_0786 0.25 -3.1 893,110 + Psyr_0786 0.25 -0.6 893,111 - Psyr_0786 0.25 -1.4 893,111 - Psyr_0786 0.25 -1.6 893,111 - Psyr_0786 0.25 -1.6 893,205 + Psyr_0786 0.30 +2.2 893,206 - Psyr_0786 0.30 +0.9 893,206 - Psyr_0786 0.30 -2.6 893,206 - Psyr_0786 0.30 -2.3 893,337 + Psyr_0786 0.36 +1.9
Or see this region's nucleotide sequence