Experiment: apoplastic, grinding recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0739 and Psyr_0740 are separated by 273 nucleotides Psyr_0740 and Psyr_0741 are separated by 80 nucleotides Psyr_0741 and Psyr_0742 are separated by 52 nucleotides
Psyr_0739: Psyr_0739 - CDS, at 843,593 to 844,246
_0739
Psyr_0740: Psyr_0740 - CDS, at 844,520 to 844,927
_0740
Psyr_0741: Psyr_0741 - transcriptional regulator, TetR family, at 845,008 to 845,643
_0741
Psyr_0742: Psyr_0742 - Enoyl-CoA hydratase/isomerase, at 845,696 to 846,529
_0742
Position (kb) 844
845 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 843.552 kb on - strand at 843.556 kb on - strand at 843.556 kb on - strand at 843.556 kb on - strand at 843.556 kb on - strand at 843.561 kb on - strand at 843.561 kb on - strand at 843.561 kb on - strand at 843.566 kb on - strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.586 kb on - strand at 843.586 kb on - strand at 843.628 kb on + strand at 843.628 kb on + strand at 843.638 kb on + strand at 843.638 kb on + strand at 843.638 kb on + strand at 843.638 kb on + strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.749 kb on + strand, within Psyr_0739 at 843.749 kb on + strand, within Psyr_0739 at 843.756 kb on + strand, within Psyr_0739 at 843.756 kb on + strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.808 kb on - strand, within Psyr_0739 at 843.808 kb on - strand, within Psyr_0739 at 844.020 kb on + strand, within Psyr_0739 at 844.059 kb on - strand, within Psyr_0739 at 844.103 kb on + strand, within Psyr_0739 at 844.103 kb on + strand, within Psyr_0739 at 844.103 kb on + strand, within Psyr_0739 at 844.104 kb on - strand, within Psyr_0739 at 844.203 kb on + strand at 844.203 kb on + strand at 844.228 kb on + strand at 844.416 kb on - strand at 844.457 kb on + strand at 844.500 kb on + strand at 844.501 kb on - strand at 844.557 kb on + strand at 844.557 kb on + strand at 844.557 kb on + strand at 844.557 kb on + strand at 844.558 kb on - strand at 844.558 kb on - strand at 844.558 kb on - strand at 844.558 kb on - strand at 844.558 kb on - strand at 844.634 kb on + strand, within Psyr_0740 at 844.634 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.737 kb on - strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.902 kb on - strand at 844.948 kb on + strand at 844.948 kb on + strand at 844.948 kb on + strand at 844.948 kb on + strand at 844.949 kb on - strand at 844.949 kb on - strand at 844.949 kb on - strand at 844.952 kb on + strand at 844.952 kb on + strand at 844.953 kb on - strand at 844.953 kb on - strand at 844.953 kb on - strand at 844.953 kb on - strand at 844.960 kb on + strand at 844.961 kb on - strand at 844.998 kb on + strand at 844.998 kb on + strand at 844.998 kb on + strand at 844.998 kb on + strand at 844.999 kb on - strand at 844.999 kb on - strand at 844.999 kb on - strand at 844.999 kb on - strand at 845.151 kb on + strand, within Psyr_0741 at 845.151 kb on + strand, within Psyr_0741 at 845.183 kb on + strand, within Psyr_0741 at 845.183 kb on + strand, within Psyr_0741 at 845.183 kb on + strand, within Psyr_0741 at 845.183 kb on + strand, within Psyr_0741 at 845.183 kb on + strand, within Psyr_0741 at 845.238 kb on + strand, within Psyr_0741 at 845.303 kb on + strand, within Psyr_0741 at 845.303 kb on + strand, within Psyr_0741 at 845.304 kb on - strand, within Psyr_0741 at 845.311 kb on + strand, within Psyr_0741 at 845.312 kb on - strand, within Psyr_0741 at 845.312 kb on - strand, within Psyr_0741 at 845.312 kb on - strand, within Psyr_0741 at 845.352 kb on + strand, within Psyr_0741 at 845.352 kb on + strand, within Psyr_0741 at 845.352 kb on + strand, within Psyr_0741 at 845.353 kb on - strand, within Psyr_0741 at 845.435 kb on + strand, within Psyr_0741 at 845.435 kb on + strand, within Psyr_0741 at 845.435 kb on + strand, within Psyr_0741 at 845.435 kb on + strand, within Psyr_0741 at 845.435 kb on + strand, within Psyr_0741 at 845.495 kb on - strand, within Psyr_0741 at 845.495 kb on - strand, within Psyr_0741 at 845.651 kb on - strand at 845.651 kb on - strand at 845.685 kb on + strand at 845.686 kb on - strand at 845.697 kb on + strand at 845.697 kb on + strand at 845.697 kb on + strand at 845.698 kb on - strand at 845.698 kb on - strand at 845.698 kb on - strand at 845.698 kb on - strand at 845.698 kb on - strand at 845.698 kb on - strand at 845.698 kb on - strand at 845.698 kb on - strand at 845.701 kb on + strand at 845.701 kb on + strand at 845.701 kb on + strand at 845.727 kb on + strand at 845.821 kb on + strand, within Psyr_0742 at 845.845 kb on + strand, within Psyr_0742 at 845.845 kb on + strand, within Psyr_0742 at 845.845 kb on + strand, within Psyr_0742 at 845.846 kb on - strand, within Psyr_0742
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, grinding recovery; Green bean remove 843,552 - -2.4 843,556 - +1.8 843,556 - -0.7 843,556 - -0.3 843,556 - -1.6 843,561 - +1.8 843,561 - +1.8 843,561 - -1.4 843,566 - +1.6 843,585 + -2.8 843,585 + +0.6 843,586 - -2.6 843,586 - -3.4 843,628 + +0.6 843,628 + +0.3 843,638 + -0.8 843,638 + +0.0 843,638 + -2.6 843,638 + +0.9 843,639 - +0.3 843,639 - +0.5 843,639 - -0.7 843,639 - +0.4 843,749 + Psyr_0739 0.24 +0.5 843,749 + Psyr_0739 0.24 +0.4 843,756 + Psyr_0739 0.25 +0.3 843,756 + Psyr_0739 0.25 +0.7 843,757 - Psyr_0739 0.25 -1.3 843,757 - Psyr_0739 0.25 -3.9 843,757 - Psyr_0739 0.25 -2.9 843,757 - Psyr_0739 0.25 -1.4 843,808 - Psyr_0739 0.33 +0.1 843,808 - Psyr_0739 0.33 +1.4 844,020 + Psyr_0739 0.65 +0.6 844,059 - Psyr_0739 0.71 +1.3 844,103 + Psyr_0739 0.78 +1.2 844,103 + Psyr_0739 0.78 -2.2 844,103 + Psyr_0739 0.78 -1.4 844,104 - Psyr_0739 0.78 +1.0 844,203 + -2.0 844,203 + -1.1 844,228 + -0.7 844,416 - +1.3 844,457 + -1.5 844,500 + +0.5 844,501 - -1.8 844,557 + +2.1 844,557 + +2.9 844,557 + +0.5 844,557 + -1.9 844,558 - -1.9 844,558 - +0.3 844,558 - -2.1 844,558 - +0.6 844,558 - +0.0 844,634 + Psyr_0740 0.28 -1.2 844,634 + Psyr_0740 0.28 +0.8 844,656 + Psyr_0740 0.33 -1.7 844,656 + Psyr_0740 0.33 +1.3 844,656 + Psyr_0740 0.33 -0.6 844,656 + Psyr_0740 0.33 -1.4 844,656 + Psyr_0740 0.33 +0.9 844,656 + Psyr_0740 0.33 -1.7 844,656 + Psyr_0740 0.33 -0.2 844,656 + Psyr_0740 0.33 +1.0 844,656 + Psyr_0740 0.33 +1.0 844,656 + Psyr_0740 0.33 +0.2 844,656 + Psyr_0740 0.33 -3.3 844,656 + Psyr_0740 0.33 +0.2 844,656 + Psyr_0740 0.33 -0.6 844,656 + Psyr_0740 0.33 +4.1 844,656 + Psyr_0740 0.33 -0.5 844,656 + Psyr_0740 0.33 -3.2 844,656 + Psyr_0740 0.33 -1.2 844,656 + Psyr_0740 0.33 -1.5 844,656 + Psyr_0740 0.33 -1.9 844,657 - Psyr_0740 0.34 +1.2 844,657 - Psyr_0740 0.34 -2.9 844,657 - Psyr_0740 0.34 +1.1 844,657 - Psyr_0740 0.34 +1.2 844,657 - Psyr_0740 0.34 -1.4 844,657 - Psyr_0740 0.34 +1.0 844,657 - Psyr_0740 0.34 -0.1 844,657 - Psyr_0740 0.34 -0.7 844,657 - Psyr_0740 0.34 +1.1 844,657 - Psyr_0740 0.34 -2.7 844,657 - Psyr_0740 0.34 +1.6 844,657 - Psyr_0740 0.34 -1.0 844,657 - Psyr_0740 0.34 -2.5 844,657 - Psyr_0740 0.34 -1.5 844,657 - Psyr_0740 0.34 +0.0 844,657 - Psyr_0740 0.34 +0.0 844,657 - Psyr_0740 0.34 -1.0 844,657 - Psyr_0740 0.34 +1.2 844,657 - Psyr_0740 0.34 -1.5 844,657 - Psyr_0740 0.34 -0.7 844,657 - Psyr_0740 0.34 -0.4 844,657 - Psyr_0740 0.34 -0.2 844,657 - Psyr_0740 0.34 -1.0 844,737 - Psyr_0740 0.53 -0.1 844,884 + Psyr_0740 0.89 +1.2 844,884 + Psyr_0740 0.89 +1.5 844,884 + Psyr_0740 0.89 -2.5 844,884 + Psyr_0740 0.89 +2.6 844,884 + Psyr_0740 0.89 +0.5 844,884 + Psyr_0740 0.89 -1.4 844,884 + Psyr_0740 0.89 -0.3 844,884 + Psyr_0740 0.89 +1.8 844,884 + Psyr_0740 0.89 +0.6 844,884 + Psyr_0740 0.89 -2.6 844,884 + Psyr_0740 0.89 +1.0 844,884 + Psyr_0740 0.89 +1.2 844,885 - Psyr_0740 0.89 -1.6 844,885 - Psyr_0740 0.89 +0.0 844,885 - Psyr_0740 0.89 +1.2 844,885 - Psyr_0740 0.89 +1.2 844,885 - Psyr_0740 0.89 -0.7 844,885 - Psyr_0740 0.89 -0.8 844,885 - Psyr_0740 0.89 -1.0 844,902 - +2.2 844,948 + -2.9 844,948 + -2.3 844,948 + -1.9 844,948 + +0.0 844,949 - -0.1 844,949 - +0.8 844,949 - +0.6 844,952 + -0.2 844,952 + +1.5 844,953 - +0.7 844,953 - -1.9 844,953 - -2.0 844,953 - +1.6 844,960 + -2.9 844,961 - +1.7 844,998 + +0.9 844,998 + +0.0 844,998 + -2.5 844,998 + -2.3 844,999 - -3.3 844,999 - -3.4 844,999 - -2.0 844,999 - -3.0 845,151 + Psyr_0741 0.22 -0.2 845,151 + Psyr_0741 0.22 +1.2 845,183 + Psyr_0741 0.28 +0.6 845,183 + Psyr_0741 0.28 +1.9 845,183 + Psyr_0741 0.28 -2.1 845,183 + Psyr_0741 0.28 -3.0 845,183 + Psyr_0741 0.28 -1.6 845,238 + Psyr_0741 0.36 -0.4 845,303 + Psyr_0741 0.46 +1.5 845,303 + Psyr_0741 0.46 +0.8 845,304 - Psyr_0741 0.47 +1.0 845,311 + Psyr_0741 0.48 +0.8 845,312 - Psyr_0741 0.48 -3.5 845,312 - Psyr_0741 0.48 +2.8 845,312 - Psyr_0741 0.48 +0.9 845,352 + Psyr_0741 0.54 +0.3 845,352 + Psyr_0741 0.54 -0.7 845,352 + Psyr_0741 0.54 +0.7 845,353 - Psyr_0741 0.54 +0.2 845,435 + Psyr_0741 0.67 -2.9 845,435 + Psyr_0741 0.67 +0.6 845,435 + Psyr_0741 0.67 -0.4 845,435 + Psyr_0741 0.67 -1.9 845,435 + Psyr_0741 0.67 -2.0 845,495 - Psyr_0741 0.77 +0.5 845,495 - Psyr_0741 0.77 +1.0 845,651 - -1.0 845,651 - +0.0 845,685 + -0.5 845,686 - -1.6 845,697 + -1.4 845,697 + +0.8 845,697 + -2.1 845,698 - +1.4 845,698 - +2.7 845,698 - -1.5 845,698 - -2.2 845,698 - -0.7 845,698 - -2.5 845,698 - -2.0 845,698 - +0.5 845,701 + -3.7 845,701 + -0.7 845,701 + +0.5 845,727 + -0.7 845,821 + Psyr_0742 0.15 +0.0 845,845 + Psyr_0742 0.18 -3.1 845,845 + Psyr_0742 0.18 -1.2 845,845 + Psyr_0742 0.18 -0.7 845,846 - Psyr_0742 0.18 +0.0
Or see this region's nucleotide sequence