Experiment: apoplastic, grinding recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0468 and Psyr_0469 are separated by 338 nucleotides Psyr_0469 and Psyr_0470 are separated by 75 nucleotides Psyr_0470 and Psyr_0471 are separated by 9 nucleotides
Psyr_0468: Psyr_0468 - Aminotransferase, class I and II, at 506,590 to 507,798
_0468
Psyr_0469: Psyr_0469 - dihydroxyacid dehydratase, at 508,137 to 509,984
_0469
Psyr_0470: Psyr_0470 - conserved hypothetical protein, at 510,060 to 510,383
_0470
Psyr_0471: Psyr_0471 - coproporphyrinogen III oxidase, anaerobic, at 510,393 to 511,607
_0471
Position (kb) 508
509
510 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 507.147 kb on - strand, within Psyr_0468 at 507.191 kb on + strand, within Psyr_0468 at 507.192 kb on - strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.539 kb on + strand, within Psyr_0468 at 507.540 kb on - strand, within Psyr_0468 at 507.540 kb on - strand, within Psyr_0468 at 507.743 kb on + strand at 507.743 kb on + strand at 507.743 kb on + strand at 507.744 kb on - strand at 507.744 kb on - strand at 507.744 kb on - strand at 507.802 kb on + strand at 507.802 kb on + strand at 507.802 kb on + strand at 507.802 kb on + strand at 507.802 kb on + strand at 507.802 kb on + strand at 507.803 kb on - strand at 507.811 kb on + strand at 507.815 kb on + strand at 507.815 kb on + strand at 507.816 kb on - strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.959 kb on + strand at 508.018 kb on - strand at 508.086 kb on + strand at 508.086 kb on + strand at 508.086 kb on + strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.116 kb on + strand at 508.411 kb on - strand, within Psyr_0469 at 508.411 kb on - strand, within Psyr_0469 at 508.452 kb on + strand, within Psyr_0469 at 508.452 kb on + strand, within Psyr_0469 at 508.452 kb on + strand, within Psyr_0469 at 508.453 kb on - strand, within Psyr_0469 at 508.453 kb on - strand, within Psyr_0469 at 508.453 kb on - strand, within Psyr_0469 at 508.453 kb on - strand, within Psyr_0469 at 508.680 kb on + strand, within Psyr_0469 at 508.681 kb on - strand, within Psyr_0469 at 508.866 kb on + strand, within Psyr_0469 at 508.866 kb on + strand, within Psyr_0469 at 508.867 kb on - strand, within Psyr_0469 at 508.867 kb on - strand, within Psyr_0469 at 508.869 kb on + strand, within Psyr_0469 at 508.869 kb on + strand, within Psyr_0469 at 508.869 kb on + strand, within Psyr_0469 at 508.869 kb on + strand, within Psyr_0469 at 508.870 kb on - strand, within Psyr_0469 at 508.870 kb on - strand, within Psyr_0469 at 508.870 kb on - strand, within Psyr_0469 at 508.870 kb on - strand, within Psyr_0469 at 508.870 kb on - strand, within Psyr_0469 at 508.870 kb on - strand, within Psyr_0469 at 508.870 kb on - strand, within Psyr_0469 at 509.081 kb on + strand, within Psyr_0469 at 509.091 kb on + strand, within Psyr_0469 at 509.091 kb on + strand, within Psyr_0469 at 509.091 kb on + strand, within Psyr_0469 at 509.092 kb on - strand, within Psyr_0469 at 509.092 kb on - strand, within Psyr_0469 at 509.092 kb on - strand, within Psyr_0469 at 509.186 kb on - strand, within Psyr_0469 at 509.186 kb on - strand, within Psyr_0469 at 509.377 kb on - strand, within Psyr_0469 at 509.404 kb on + strand, within Psyr_0469 at 509.405 kb on - strand, within Psyr_0469 at 509.405 kb on - strand, within Psyr_0469 at 509.405 kb on - strand, within Psyr_0469 at 509.405 kb on - strand, within Psyr_0469 at 509.406 kb on + strand, within Psyr_0469 at 509.406 kb on + strand, within Psyr_0469 at 509.407 kb on - strand, within Psyr_0469 at 509.611 kb on - strand, within Psyr_0469 at 509.623 kb on - strand, within Psyr_0469 at 509.910 kb on + strand at 509.996 kb on - strand at 510.002 kb on + strand at 510.003 kb on - strand at 510.003 kb on - strand at 510.003 kb on - strand at 510.061 kb on + strand at 510.061 kb on + strand at 510.061 kb on + strand at 510.062 kb on - strand at 510.062 kb on - strand at 510.062 kb on - strand at 510.124 kb on + strand, within Psyr_0470 at 510.124 kb on + strand, within Psyr_0470 at 510.124 kb on + strand, within Psyr_0470 at 510.124 kb on + strand, within Psyr_0470 at 510.169 kb on + strand, within Psyr_0470 at 510.169 kb on + strand, within Psyr_0470 at 510.170 kb on - strand, within Psyr_0470 at 510.170 kb on - strand, within Psyr_0470 at 510.394 kb on + strand at 510.394 kb on + strand at 510.394 kb on + strand at 510.394 kb on + strand at 510.394 kb on + strand at 510.394 kb on + strand at 510.395 kb on - strand at 510.395 kb on - strand at 510.406 kb on + strand at 510.406 kb on + strand at 510.407 kb on - strand at 510.550 kb on - strand, within Psyr_0471 at 510.665 kb on - strand, within Psyr_0471 at 510.692 kb on + strand, within Psyr_0471 at 510.772 kb on + strand, within Psyr_0471 at 510.772 kb on + strand, within Psyr_0471 at 510.772 kb on + strand, within Psyr_0471 at 510.772 kb on + strand, within Psyr_0471 at 510.811 kb on + strand, within Psyr_0471 at 510.811 kb on + strand, within Psyr_0471 at 510.812 kb on - strand, within Psyr_0471 at 510.826 kb on + strand, within Psyr_0471
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, grinding recovery; Green bean remove 507,147 - Psyr_0468 0.46 -1.5 507,191 + Psyr_0468 0.50 +0.6 507,192 - Psyr_0468 0.50 -2.1 507,389 + Psyr_0468 0.66 -0.3 507,389 + Psyr_0468 0.66 -0.1 507,389 + Psyr_0468 0.66 -1.1 507,389 + Psyr_0468 0.66 -3.8 507,389 + Psyr_0468 0.66 +2.5 507,389 + Psyr_0468 0.66 +1.4 507,389 + Psyr_0468 0.66 +0.5 507,389 + Psyr_0468 0.66 -1.1 507,389 + Psyr_0468 0.66 -1.8 507,390 - Psyr_0468 0.66 -2.9 507,390 - Psyr_0468 0.66 +0.5 507,390 - Psyr_0468 0.66 -1.9 507,390 - Psyr_0468 0.66 -2.0 507,390 - Psyr_0468 0.66 -0.6 507,390 - Psyr_0468 0.66 -0.7 507,539 + Psyr_0468 0.78 +0.9 507,540 - Psyr_0468 0.79 +1.3 507,540 - Psyr_0468 0.79 -1.2 507,743 + +1.5 507,743 + -4.3 507,743 + +1.4 507,744 - -0.7 507,744 - -0.7 507,744 - -2.6 507,802 + -1.5 507,802 + -2.0 507,802 + +0.1 507,802 + +1.2 507,802 + +0.2 507,802 + -1.9 507,803 - -0.5 507,811 + -1.9 507,815 + -0.6 507,815 + +1.2 507,816 - -1.3 507,872 + -1.9 507,872 + -0.3 507,872 + -2.9 507,872 + +0.6 507,872 + -1.2 507,872 + -2.3 507,872 + +2.6 507,872 + +1.1 507,872 + -2.9 507,872 + -3.5 507,872 + +1.8 507,872 + -2.7 507,873 - -1.5 507,873 - +0.6 507,873 - -2.0 507,873 - -1.5 507,873 - -1.6 507,873 - -1.8 507,873 - -3.2 507,873 - -1.2 507,873 - -1.7 507,873 - -0.5 507,873 - +0.5 507,873 - -2.0 507,873 - -3.4 507,873 - +0.0 507,873 - -0.6 507,873 - -1.0 507,873 - +0.4 507,959 + -2.2 508,018 - -1.2 508,086 + +1.3 508,086 + +1.5 508,086 + +1.2 508,087 - -3.2 508,087 - +0.5 508,087 - -1.9 508,087 - -3.4 508,087 - -3.0 508,087 - -0.6 508,087 - -0.8 508,087 - -3.3 508,116 + -1.0 508,411 - Psyr_0469 0.15 -3.7 508,411 - Psyr_0469 0.15 -1.5 508,452 + Psyr_0469 0.17 -2.3 508,452 + Psyr_0469 0.17 -2.5 508,452 + Psyr_0469 0.17 -3.7 508,453 - Psyr_0469 0.17 +0.1 508,453 - Psyr_0469 0.17 -2.8 508,453 - Psyr_0469 0.17 -2.5 508,453 - Psyr_0469 0.17 -0.6 508,680 + Psyr_0469 0.29 -2.4 508,681 - Psyr_0469 0.29 -2.1 508,866 + Psyr_0469 0.39 -4.4 508,866 + Psyr_0469 0.39 -1.1 508,867 - Psyr_0469 0.40 -2.5 508,867 - Psyr_0469 0.40 -1.1 508,869 + Psyr_0469 0.40 -1.1 508,869 + Psyr_0469 0.40 -2.6 508,869 + Psyr_0469 0.40 -2.8 508,869 + Psyr_0469 0.40 -2.9 508,870 - Psyr_0469 0.40 -3.8 508,870 - Psyr_0469 0.40 -3.2 508,870 - Psyr_0469 0.40 -2.8 508,870 - Psyr_0469 0.40 -1.6 508,870 - Psyr_0469 0.40 -3.3 508,870 - Psyr_0469 0.40 -2.1 508,870 - Psyr_0469 0.40 -2.2 509,081 + Psyr_0469 0.51 +0.9 509,091 + Psyr_0469 0.52 -2.6 509,091 + Psyr_0469 0.52 -3.5 509,091 + Psyr_0469 0.52 -1.5 509,092 - Psyr_0469 0.52 +0.9 509,092 - Psyr_0469 0.52 -3.2 509,092 - Psyr_0469 0.52 -1.6 509,186 - Psyr_0469 0.57 -3.0 509,186 - Psyr_0469 0.57 -2.5 509,377 - Psyr_0469 0.67 -1.8 509,404 + Psyr_0469 0.69 -2.9 509,405 - Psyr_0469 0.69 -2.8 509,405 - Psyr_0469 0.69 -3.2 509,405 - Psyr_0469 0.69 -2.5 509,405 - Psyr_0469 0.69 -3.0 509,406 + Psyr_0469 0.69 -1.3 509,406 + Psyr_0469 0.69 +0.1 509,407 - Psyr_0469 0.69 -1.5 509,611 - Psyr_0469 0.80 -1.1 509,623 - Psyr_0469 0.80 -3.5 509,910 + -0.6 509,996 - -2.9 510,002 + +1.3 510,003 - -2.5 510,003 - -0.8 510,003 - -0.6 510,061 + +0.9 510,061 + -0.8 510,061 + -2.9 510,062 - -0.5 510,062 - +0.9 510,062 - +0.3 510,124 + Psyr_0470 0.20 -2.4 510,124 + Psyr_0470 0.20 -0.3 510,124 + Psyr_0470 0.20 -2.2 510,124 + Psyr_0470 0.20 -2.5 510,169 + Psyr_0470 0.34 +0.1 510,169 + Psyr_0470 0.34 +2.8 510,170 - Psyr_0470 0.34 -0.3 510,170 - Psyr_0470 0.34 -2.3 510,394 + -2.1 510,394 + -0.3 510,394 + +0.2 510,394 + +0.6 510,394 + +1.4 510,394 + +1.5 510,395 - +0.8 510,395 - -1.8 510,406 + +1.7 510,406 + +0.1 510,407 - -3.7 510,550 - Psyr_0471 0.13 +1.1 510,665 - Psyr_0471 0.22 -0.9 510,692 + Psyr_0471 0.25 -0.9 510,772 + Psyr_0471 0.31 +1.3 510,772 + Psyr_0471 0.31 +1.1 510,772 + Psyr_0471 0.31 +0.8 510,772 + Psyr_0471 0.31 -1.3 510,811 + Psyr_0471 0.34 +0.7 510,811 + Psyr_0471 0.34 -0.1 510,812 - Psyr_0471 0.34 -2.1 510,826 + Psyr_0471 0.36 +0.6
Or see this region's nucleotide sequence