Experiment: apoplastic, grinding recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0430 and Psyr_0431 overlap by 4 nucleotides Psyr_0431 and Psyr_0432 are separated by 54 nucleotides Psyr_0432 and Psyr_0433 overlap by 4 nucleotides Psyr_0433 and Psyr_0434 overlap by 8 nucleotides
Psyr_0430: Psyr_0430 - conserved hypothetical protein, at 470,002 to 470,616
_0430
Psyr_0431: Psyr_0431 - Thioesterase superfamily, at 470,613 to 471,062
_0431
Psyr_0432: Psyr_0432 - conserved hypothetical protein, at 471,117 to 472,064
_0432
Psyr_0433: Psyr_0433 - Glycosyl transferase, family 2, at 472,061 to 472,795
_0433
Psyr_0434: Psyr_0434 - AMP-dependent synthetase and ligase, at 472,788 to 474,479
_0434
Position (kb) 471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 470.632 kb on - strand at 470.632 kb on - strand at 470.729 kb on + strand, within Psyr_0431 at 470.730 kb on - strand, within Psyr_0431 at 470.858 kb on - strand, within Psyr_0431 at 470.858 kb on - strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.918 kb on + strand, within Psyr_0431 at 470.918 kb on + strand, within Psyr_0431 at 470.919 kb on - strand, within Psyr_0431 at 470.919 kb on - strand, within Psyr_0431 at 470.919 kb on - strand, within Psyr_0431 at 470.962 kb on + strand, within Psyr_0431 at 470.962 kb on + strand, within Psyr_0431 at 470.962 kb on + strand, within Psyr_0431 at 470.971 kb on + strand, within Psyr_0431 at 470.971 kb on + strand, within Psyr_0431 at 470.972 kb on - strand, within Psyr_0431 at 470.972 kb on - strand, within Psyr_0431 at 470.972 kb on - strand, within Psyr_0431 at 471.064 kb on + strand at 471.064 kb on + strand at 471.064 kb on + strand at 471.064 kb on + strand at 471.064 kb on + strand at 471.065 kb on - strand at 471.065 kb on - strand at 471.065 kb on - strand at 471.093 kb on + strand at 471.093 kb on + strand at 471.093 kb on + strand at 471.094 kb on - strand at 471.094 kb on - strand at 471.094 kb on - strand at 471.094 kb on - strand at 471.094 kb on - strand at 471.878 kb on - strand, within Psyr_0432 at 471.923 kb on - strand, within Psyr_0432 at 471.923 kb on - strand, within Psyr_0432 at 471.923 kb on - strand, within Psyr_0432 at 471.937 kb on + strand, within Psyr_0432 at 472.192 kb on - strand, within Psyr_0433 at 472.399 kb on - strand, within Psyr_0433 at 472.407 kb on + strand, within Psyr_0433 at 472.408 kb on - strand, within Psyr_0433 at 472.629 kb on + strand, within Psyr_0433 at 472.629 kb on + strand, within Psyr_0433 at 472.630 kb on - strand, within Psyr_0433 at 472.630 kb on - strand, within Psyr_0433 at 472.630 kb on - strand, within Psyr_0433 at 472.630 kb on - strand, within Psyr_0433 at 472.630 kb on - strand, within Psyr_0433 at 472.634 kb on - strand, within Psyr_0433 at 472.658 kb on + strand, within Psyr_0433 at 472.789 kb on + strand at 472.789 kb on + strand at 472.789 kb on + strand at 472.789 kb on + strand at 472.789 kb on + strand at 472.789 kb on + strand at 472.789 kb on + strand at 472.790 kb on - strand at 472.790 kb on - strand at 472.790 kb on - strand at 472.790 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, grinding recovery; Green bean remove 470,632 - -1.6 470,632 - +0.1 470,729 + Psyr_0431 0.26 +0.4 470,730 - Psyr_0431 0.26 +0.1 470,858 - Psyr_0431 0.54 -0.4 470,858 - Psyr_0431 0.54 -3.2 470,914 + Psyr_0431 0.67 +1.0 470,914 + Psyr_0431 0.67 +0.8 470,914 + Psyr_0431 0.67 +0.0 470,914 + Psyr_0431 0.67 -2.0 470,914 + Psyr_0431 0.67 -2.8 470,914 + Psyr_0431 0.67 +2.4 470,914 + Psyr_0431 0.67 -1.3 470,914 + Psyr_0431 0.67 +0.7 470,914 + Psyr_0431 0.67 +0.7 470,914 + Psyr_0431 0.67 -1.9 470,914 + Psyr_0431 0.67 +1.5 470,914 + Psyr_0431 0.67 +0.6 470,914 + Psyr_0431 0.67 -1.0 470,914 + Psyr_0431 0.67 +1.2 470,914 + Psyr_0431 0.67 +1.4 470,914 + Psyr_0431 0.67 +0.4 470,914 + Psyr_0431 0.67 -1.6 470,914 + Psyr_0431 0.67 +2.7 470,914 + Psyr_0431 0.67 +1.0 470,915 - Psyr_0431 0.67 +1.6 470,915 - Psyr_0431 0.67 +3.9 470,915 - Psyr_0431 0.67 -3.2 470,915 - Psyr_0431 0.67 -0.5 470,915 - Psyr_0431 0.67 +0.6 470,915 - Psyr_0431 0.67 +2.7 470,915 - Psyr_0431 0.67 -2.9 470,915 - Psyr_0431 0.67 +1.1 470,915 - Psyr_0431 0.67 -2.7 470,915 - Psyr_0431 0.67 -1.4 470,918 + Psyr_0431 0.68 +0.9 470,918 + Psyr_0431 0.68 +0.5 470,919 - Psyr_0431 0.68 -1.4 470,919 - Psyr_0431 0.68 +0.7 470,919 - Psyr_0431 0.68 -1.2 470,962 + Psyr_0431 0.78 +1.4 470,962 + Psyr_0431 0.78 +0.9 470,962 + Psyr_0431 0.78 +0.3 470,971 + Psyr_0431 0.80 +0.7 470,971 + Psyr_0431 0.80 +1.1 470,972 - Psyr_0431 0.80 +0.1 470,972 - Psyr_0431 0.80 -0.6 470,972 - Psyr_0431 0.80 -2.1 471,064 + +0.5 471,064 + -0.3 471,064 + +1.1 471,064 + -0.2 471,064 + -2.4 471,065 - +0.3 471,065 - -0.9 471,065 - -0.9 471,093 + -2.4 471,093 + -0.4 471,093 + -0.3 471,094 - -0.4 471,094 - -0.6 471,094 - +0.9 471,094 - +1.2 471,094 - -1.1 471,878 - Psyr_0432 0.80 -2.1 471,923 - Psyr_0432 0.85 +2.9 471,923 - Psyr_0432 0.85 +0.9 471,923 - Psyr_0432 0.85 -2.5 471,937 + Psyr_0432 0.86 +1.9 472,192 - Psyr_0433 0.18 -2.7 472,399 - Psyr_0433 0.46 +1.9 472,407 + Psyr_0433 0.47 -0.6 472,408 - Psyr_0433 0.47 +1.6 472,629 + Psyr_0433 0.77 +0.9 472,629 + Psyr_0433 0.77 +0.4 472,630 - Psyr_0433 0.77 +1.8 472,630 - Psyr_0433 0.77 -0.6 472,630 - Psyr_0433 0.77 -0.5 472,630 - Psyr_0433 0.77 +0.9 472,630 - Psyr_0433 0.77 +0.9 472,634 - Psyr_0433 0.78 +0.5 472,658 + Psyr_0433 0.81 -1.9 472,789 + +2.8 472,789 + -0.9 472,789 + -2.9 472,789 + -1.9 472,789 + -0.3 472,789 + -2.4 472,789 + +0.4 472,790 - -0.4 472,790 - +0.5 472,790 - +1.9 472,790 - +0.7
Or see this region's nucleotide sequence